BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00007927
         (1018 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282635.1| PREDICTED: putative exosome complex componen...   398   e-108
ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|1...   388   e-105
ref|XP_003518749.1| PREDICTED: putative exosome complex componen...   385   e-104
ref|XP_004138110.1| PREDICTED: putative exosome complex componen...   377   e-102
ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago ...   375   e-102

>ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 [Vitis
           vinifera] gi|297733775|emb|CBI15022.3| unnamed protein
           product [Vitis vinifera]
          Length = 237

 Score =  398 bits (1023), Expect = e-108
 Identities = 200/234 (85%), Positives = 214/234 (91%)
 Frame = +3

Query: 144 NYSTSYIDKPVVPGDVVLDLSSMSNQTIKLGGGLRQDCDSITAMKAGTLRFSKPNKYWIE 323
           N   S++D+ VVPGDVVLDLS M NQTIKLGGGL QDCD+IT  KAG LRFSKPNKYW+E
Sbjct: 4   NTPASFVDQLVVPGDVVLDLSKMGNQTIKLGGGLHQDCDAITVTKAGRLRFSKPNKYWVE 63

Query: 324 SSQKRYVPSTGDTVLGIVVDSKADNFLVDIKGHALAFLPVLAFEGGTRRNIPKFEVGTLI 503
           SSQKRYVP   DTVLGIVVDSKADNFLVDIKG ALAFLPVLAFEGGTRRNIPKFE GTL+
Sbjct: 64  SSQKRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAGTLL 123

Query: 504 YVRVVKANVGMNPELACMDASGKAAEFGQLKDGYMFESSTGLSRMLLSSPTCPVLEALGK 683
           YVRVVKAN GMNPEL+C DASGKAAEFG LKDGYMFESSTGLSRMLLSSPTCPVLEALGK
Sbjct: 124 YVRVVKANTGMNPELSCTDASGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALGK 183

Query: 684 KLSFEIAVGINGRVWVNAASPSTVILVSNSIMNSETLTGVQQKLMVDKLLQRTQ 845
           KLSFEIAVG+NGRVWVNA+SPSTVILV+N+IMNSE+L+ VQQK+MVDKLLQR Q
Sbjct: 184 KLSFEIAVGLNGRVWVNASSPSTVILVANAIMNSESLSVVQQKIMVDKLLQRIQ 237


>ref|XP_002318044.1| predicted protein [Populus trichocarpa] gi|118482713|gb|ABK93275.1|
           unknown [Populus trichocarpa]
           gi|222858717|gb|EEE96264.1| predicted protein [Populus
           trichocarpa]
          Length = 242

 Score =  388 bits (996), Expect = e-105
 Identities = 192/238 (80%), Positives = 215/238 (90%)
 Frame = +3

Query: 132 AKPANYSTSYIDKPVVPGDVVLDLSSMSNQTIKLGGGLRQDCDSITAMKAGTLRFSKPNK 311
           +K +    ++ID  VVPGDVV+DLSSM+NQTIKLG GLRQDCD+I+ MKAG LRFSKPNK
Sbjct: 3   SKSSGSPATFIDNLVVPGDVVVDLSSMTNQTIKLGSGLRQDCDAISVMKAGKLRFSKPNK 62

Query: 312 YWIESSQKRYVPSTGDTVLGIVVDSKADNFLVDIKGHALAFLPVLAFEGGTRRNIPKFEV 491
           YW+E+SQKRYVP   D+VLGIVVDSK+DNFL+DIKG ALAFLPVLAFEGGTRRNIPKFE 
Sbjct: 63  YWVETSQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPALAFLPVLAFEGGTRRNIPKFEA 122

Query: 492 GTLIYVRVVKANVGMNPELACMDASGKAAEFGQLKDGYMFESSTGLSRMLLSSPTCPVLE 671
           GTL+YVRVVKAN GMNPEL+C DASGKAAEFG LKDGYMFE STGLSRMLLSSPTCPVLE
Sbjct: 123 GTLLYVRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPVLE 182

Query: 672 ALGKKLSFEIAVGINGRVWVNAASPSTVILVSNSIMNSETLTGVQQKLMVDKLLQRTQ 845
           ALGKKLSFEIAVG+NGRVWVNA SPS VI+V+N+IMNSETL+GVQQK+M +KLLQ+ Q
Sbjct: 183 ALGKKLSFEIAVGLNGRVWVNANSPSIVIIVANAIMNSETLSGVQQKIMAEKLLQKIQ 240


>ref|XP_003518749.1| PREDICTED: putative exosome complex component rrp40-like [Glycine
           max]
          Length = 240

 Score =  385 bits (988), Expect = e-104
 Identities = 187/235 (79%), Positives = 216/235 (91%)
 Frame = +3

Query: 135 KPANYSTSYIDKPVVPGDVVLDLSSMSNQTIKLGGGLRQDCDSITAMKAGTLRFSKPNKY 314
           K ++ ST+ +D+ V PGDV+LDLS+M+NQTIKLGGGLRQDCD+I+ MKAG LRFSKPNKY
Sbjct: 4   KSSSSSTNLVDQSVCPGDVILDLSNMTNQTIKLGGGLRQDCDAISVMKAGRLRFSKPNKY 63

Query: 315 WIESSQKRYVPSTGDTVLGIVVDSKADNFLVDIKGHALAFLPVLAFEGGTRRNIPKFEVG 494
           W+E+SQKRYVP   D+VLGIVVDS++DNFLVDIKG ALAFLPVLAFEGGTRRNIP+FE+G
Sbjct: 64  WVENSQKRYVPHAEDSVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPRFEIG 123

Query: 495 TLIYVRVVKANVGMNPELACMDASGKAAEFGQLKDGYMFESSTGLSRMLLSSPTCPVLEA 674
           TLIY RVVKAN GMNPELAC DASGKAAEFG LKDGYMFE +TGLSRMLLSSPTCPVL+A
Sbjct: 124 TLIYARVVKANPGMNPELACTDASGKAAEFGALKDGYMFECTTGLSRMLLSSPTCPVLDA 183

Query: 675 LGKKLSFEIAVGINGRVWVNAASPSTVILVSNSIMNSETLTGVQQKLMVDKLLQR 839
           LGKKLSFEIAVG+NGRVWV+AASP T I+V+N+IMNSETL+G QQ++MV+KLL+R
Sbjct: 184 LGKKLSFEIAVGLNGRVWVSAASPQTTIVVANAIMNSETLSGAQQRIMVEKLLER 238


>ref|XP_004138110.1| PREDICTED: putative exosome complex component rrp40-like [Cucumis
           sativus] gi|449477413|ref|XP_004155016.1| PREDICTED:
           putative exosome complex component rrp40-like [Cucumis
           sativus]
          Length = 243

 Score =  377 bits (968), Expect = e-102
 Identities = 185/235 (78%), Positives = 213/235 (90%)
 Frame = +3

Query: 129 IAKPANYSTSYIDKPVVPGDVVLDLSSMSNQTIKLGGGLRQDCDSITAMKAGTLRFSKPN 308
           + KP++ S++ +D+PVVPGDVVLDLS+M+N+TIKLGGGLRQD D+I+  K G LRFSKPN
Sbjct: 2   VEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKPN 61

Query: 309 KYWIESSQKRYVPSTGDTVLGIVVDSKADNFLVDIKGHALAFLPVLAFEGGTRRNIPKFE 488
           KYW+ESSQKRYVP   D VLGIV+DS+ADNFLVDIKG +LAFLPVLAFEGGTRRNIPKFE
Sbjct: 62  KYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFE 121

Query: 489 VGTLIYVRVVKANVGMNPELACMDASGKAAEFGQLKDGYMFESSTGLSRMLLSSPTCPVL 668
           +G L+YVRVVK N GMNPELAC DASGKAA FG LKDGYMFE STGLSRMLLSSP+CPVL
Sbjct: 122 MGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPVL 181

Query: 669 EALGKKLSFEIAVGINGRVWVNAASPSTVILVSNSIMNSETLTGVQQKLMVDKLL 833
           E+LGKKLSFE AVG+NGRVWVNA SPST+I+VSN+I+NSETL+GVQQ++MVDKLL
Sbjct: 182 ESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLL 236


>ref|XP_003613959.1| Exosome complex exonuclease RRP40 [Medicago truncatula]
           gi|217074508|gb|ACJ85614.1| unknown [Medicago
           truncatula] gi|355515294|gb|AES96917.1| Exosome complex
           exonuclease RRP40 [Medicago truncatula]
           gi|388510130|gb|AFK43131.1| unknown [Medicago
           truncatula]
          Length = 240

 Score =  375 bits (963), Expect = e-102
 Identities = 185/238 (77%), Positives = 212/238 (89%)
 Frame = +3

Query: 132 AKPANYSTSYIDKPVVPGDVVLDLSSMSNQTIKLGGGLRQDCDSITAMKAGTLRFSKPNK 311
           +K A  ST+++D+ V PGDVVLDLS+M+NQTIKLGGGLRQD D I+ MKAG LRFSKPNK
Sbjct: 3   SKSAGSSTNFVDQLVYPGDVVLDLSTMTNQTIKLGGGLRQDGDVISVMKAGRLRFSKPNK 62

Query: 312 YWIESSQKRYVPSTGDTVLGIVVDSKADNFLVDIKGHALAFLPVLAFEGGTRRNIPKFEV 491
           YW+ESSQKRYVP   D+VLGI+VDS++DNFLVDIKG  LAFLPVLAFEGGTRRNIPKFEV
Sbjct: 63  YWVESSQKRYVPHAEDSVLGIIVDSRSDNFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEV 122

Query: 492 GTLIYVRVVKANVGMNPELACMDASGKAAEFGQLKDGYMFESSTGLSRMLLSSPTCPVLE 671
           G LIYVRVVKA  GMNPEL+C DASGKA EFG LK+GYMFE STGLSRMLLS+PTCPVL+
Sbjct: 123 GALIYVRVVKAIPGMNPELSCTDASGKAGEFGALKEGYMFECSTGLSRMLLSTPTCPVLD 182

Query: 672 ALGKKLSFEIAVGINGRVWVNAASPSTVILVSNSIMNSETLTGVQQKLMVDKLLQRTQ 845
            LGKKLSFEIAVG+NGRVWVNA+SPST I+V+N+++NSE L+GVQQK+M +KLLQR Q
Sbjct: 183 TLGKKLSFEIAVGLNGRVWVNASSPSTTIIVANALINSEVLSGVQQKIMAEKLLQRVQ 240