BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00007382
         (1745 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [...   600   e-169
emb|CBI36035.3| unnamed protein product [Vitis vinifera]              587   e-165
ref|XP_002299746.1| predicted protein [Populus trichocarpa] gi|2...   573   e-161
emb|CAN82495.1| hypothetical protein VITISV_033044 [Vitis vinifera]   560   e-157
ref|NP_199845.3| ATP binding / damaged DNA binding / nucleoside-...   547   e-153

>ref|XP_002277638.1| PREDICTED: DNA repair protein RadA homolog [Vitis vinifera]
          Length = 624

 Score =  600 bits (1547), Expect = e-169
 Identities = 337/553 (60%), Positives = 389/553 (70%), Gaps = 12/553 (2%)
 Frame = +3

Query: 123  MHAFRLIHARKHFLNLSTRLSCKYSLNPNFYPQFYTTPQRSIH--CTNHLNSW--TSFDS 290
            M A R  + +KH  N    +    SL+P    Q    P+ S H  CTNH  S   TS D+
Sbjct: 1    MRALRTFYTQKHLFNPKKHIPI--SLSPLISFQSLQNPKFSRHFRCTNHRRSEESTSLDA 58

Query: 291  GPKNDTKVTAIYDPITGSLSTERVSNVYNTNDENNQKVPKISGDGDDGDRT-------YG 449
               +    ++  D  T S S  R   V+NT         + SG     +R+       +G
Sbjct: 59   DSPSIGIGSSSPDTETNS-SRRRTWTVFNTEGSQYSDRQE-SGSRSGAERSEVSVNKGFG 116

Query: 450  VVKKGNLRSGLTGWKNFGAVSXXXXXXXXVKTSWVCESCGYSDGQWWGSCRSCDGVGTMK 629
             V+K     G  G  +              K  WVC  CGYSDGQWWG+CR C+ VGTMK
Sbjct: 117  SVEKARF-GGRYGLASSDGGVVRGRKKGKSKVCWVCSDCGYSDGQWWGACRECNKVGTMK 175

Query: 630  RFSEGDVGEG-KMASGFGVSEKMVQTWLPQQVGDVGPVRLTDVNRGVDQKEWRIPLSGLF 806
            +FS G+ G G    SGF VS+ +V++WLPQQ  +V P+RLTDVNRG++Q  WRIPL G F
Sbjct: 176  QFSAGESGNGGSRVSGFEVSDNVVRSWLPQQPTEVQPLRLTDVNRGINQMNWRIPLHGPF 235

Query: 807  GNEVARXXXXXXXXXXXXXXXXXXXXXKSTLLLQIAAIISEGHEMRQSAPVVYISGEESI 986
            G EVAR                     KSTLLLQIAAII+EGH++  S+PVVY+SGEES+
Sbjct: 236  GYEVARVLGGGLVPGSLVLVGGDPGAGKSTLLLQIAAIIAEGHDIGGSSPVVYVSGEESV 295

Query: 987  EQIGNRADRMRIGTEELFLYSSTDIEDILEKTQPLSPRALIVDSIQTVFLKGVTGSPGGL 1166
            EQIGNRADRMRI TEELFLYSSTDIEDIL +   LSPRAL+VDSIQTV+LKGV GS GGL
Sbjct: 296  EQIGNRADRMRIDTEELFLYSSTDIEDILGQVHLLSPRALVVDSIQTVYLKGVIGSAGGL 355

Query: 1167 SQVKECTSALLRFAKKTNIPVFLIGHVNKSGDIAGPRVLEHIVDAVLYLEGEKHSSHRLL 1346
            SQVKECTSALLRFAKKTNIPVFLIGHV KSGDIAGPRVLEHIVD VLY+EGEKHSSHRLL
Sbjct: 356  SQVKECTSALLRFAKKTNIPVFLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKHSSHRLL 415

Query: 1347 RSVKNRFGSTDELGVFEMSQSGLQAVPNPSEIFLSQQQIDSEILAGLAVTVIMDGSRSFV 1526
            RSVKNRFGSTDELGVFEM+Q GLQ V NPSE+FLS+Q  DSEIL GLAV VIMDGSRSF+
Sbjct: 416  RSVKNRFGSTDELGVFEMTQLGLQVVSNPSELFLSEQNSDSEILTGLAVAVIMDGSRSFL 475

Query: 1527 IEIQALCVASSTNSRQVTGLQTSRADLIISVLMKQAGLKLQENGIFLNVVSGLTLSETAG 1706
            +EIQALC++ ST +RQV G+  SRAD+II+VLMKQAGLKLQ+NGIFLNVVSG+TL+ETAG
Sbjct: 476  LEIQALCLSGSTVARQVNGVPASRADMIIAVLMKQAGLKLQDNGIFLNVVSGVTLAETAG 535

Query: 1707 DLAVAAAICSSFL 1745
            DLAVAAAICSSFL
Sbjct: 536  DLAVAAAICSSFL 548


>emb|CBI36035.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  587 bits (1513), Expect = e-165
 Identities = 300/403 (74%), Positives = 336/403 (83%), Gaps = 1/403 (0%)
 Frame = +3

Query: 540  KTSWVCESCGYSDGQWWGSCRSCDGVGTMKRFSEGDVGEG-KMASGFGVSEKMVQTWLPQ 716
            K  WVC  CGYSDGQWWG+CR C+ VGTMK+FS G+ G G    SGF VS+ +V++WLPQ
Sbjct: 105  KVCWVCSDCGYSDGQWWGACRECNKVGTMKQFSAGESGNGGSRVSGFEVSDNVVRSWLPQ 164

Query: 717  QVGDVGPVRLTDVNRGVDQKEWRIPLSGLFGNEVARXXXXXXXXXXXXXXXXXXXXXKST 896
            Q  +V P+RLTDVNRG++Q  WRIPL G FG EVAR                     KST
Sbjct: 165  QPTEVQPLRLTDVNRGINQMNWRIPLHGPFGYEVARVLGGGLVPGSLVLVGGDPGAGKST 224

Query: 897  LLLQIAAIISEGHEMRQSAPVVYISGEESIEQIGNRADRMRIGTEELFLYSSTDIEDILE 1076
            LLLQIAAII+EGH++  S+PVVY+SGEES+EQIGNRADRMRI TEELFLYSSTDIEDIL 
Sbjct: 225  LLLQIAAIIAEGHDIGGSSPVVYVSGEESVEQIGNRADRMRIDTEELFLYSSTDIEDILG 284

Query: 1077 KTQPLSPRALIVDSIQTVFLKGVTGSPGGLSQVKECTSALLRFAKKTNIPVFLIGHVNKS 1256
            +   LSPRAL+VDSIQTV+LKGV GS GGLSQVKECTSALLRFAKKTNIPVFLIGHV KS
Sbjct: 285  QVHLLSPRALVVDSIQTVYLKGVIGSAGGLSQVKECTSALLRFAKKTNIPVFLIGHVTKS 344

Query: 1257 GDIAGPRVLEHIVDAVLYLEGEKHSSHRLLRSVKNRFGSTDELGVFEMSQSGLQAVPNPS 1436
            GDIAGPRVLEHIVD VLY+EGEKHSSHRLLRSVKNRFGSTDELGVFEM+Q GLQ V NPS
Sbjct: 345  GDIAGPRVLEHIVDVVLYMEGEKHSSHRLLRSVKNRFGSTDELGVFEMTQLGLQVVSNPS 404

Query: 1437 EIFLSQQQIDSEILAGLAVTVIMDGSRSFVIEIQALCVASSTNSRQVTGLQTSRADLIIS 1616
            E+FLS+Q  DSEIL GLAV VIMDGSRSF++EIQALC++ ST +RQV G+  SRAD+II+
Sbjct: 405  ELFLSEQNSDSEILTGLAVAVIMDGSRSFLLEIQALCLSGSTVARQVNGVPASRADMIIA 464

Query: 1617 VLMKQAGLKLQENGIFLNVVSGLTLSETAGDLAVAAAICSSFL 1745
            VLMKQAGLKLQ+NGIFLNVVSG+TL+ETAGDLAVAAAICSSFL
Sbjct: 465  VLMKQAGLKLQDNGIFLNVVSGVTLAETAGDLAVAAAICSSFL 507


>ref|XP_002299746.1| predicted protein [Populus trichocarpa] gi|222847004|gb|EEE84551.1|
            predicted protein [Populus trichocarpa]
          Length = 525

 Score =  573 bits (1477), Expect = e-161
 Identities = 296/437 (67%), Positives = 342/437 (78%)
 Frame = +3

Query: 435  DRTYGVVKKGNLRSGLTGWKNFGAVSXXXXXXXXVKTSWVCESCGYSDGQWWGSCRSCDG 614
            ++ Y  VKKG+  +G  G  +              KTSWVCE CG++ GQWWGSCRSC+ 
Sbjct: 16   EKRYVGVKKGSSVNGAVGSGDRAVYRTKGKS----KTSWVCEICGFTSGQWWGSCRSCNE 71

Query: 615  VGTMKRFSEGDVGEGKMASGFGVSEKMVQTWLPQQVGDVGPVRLTDVNRGVDQKEWRIPL 794
            VGTMK+F E  +G G   SG   SE  V++WLPQ+ G++ P+RLTDVNRG++   WRIPL
Sbjct: 72   VGTMKQFFEAKIGSGNKVSGIEASENAVRSWLPQKPGELRPLRLTDVNRGMNMLNWRIPL 131

Query: 795  SGLFGNEVARXXXXXXXXXXXXXXXXXXXXXKSTLLLQIAAIISEGHEMRQSAPVVYISG 974
            SGLFG+EV R                     KSTLLLQ+AAII++  +   SAPVVY+SG
Sbjct: 132  SGLFGSEVERVLGGGLVPGSLVLVGGDPGVGKSTLLLQVAAIIADSEDPGGSAPVVYVSG 191

Query: 975  EESIEQIGNRADRMRIGTEELFLYSSTDIEDILEKTQPLSPRALIVDSIQTVFLKGVTGS 1154
            EES+EQIGNRADRM IGTEEL+LYSSTDIEDIL K Q LSPRALI+DSIQTV+LKGV GS
Sbjct: 192  EESVEQIGNRADRMEIGTEELYLYSSTDIEDILGKIQHLSPRALIIDSIQTVYLKGVAGS 251

Query: 1155 PGGLSQVKECTSALLRFAKKTNIPVFLIGHVNKSGDIAGPRVLEHIVDAVLYLEGEKHSS 1334
             GGLSQVKECTSALLRFAK TNIP+ LIGHVNKSGDIAGPRVLEHIVD VLY+EGEK+SS
Sbjct: 252  AGGLSQVKECTSALLRFAKTTNIPILLIGHVNKSGDIAGPRVLEHIVDVVLYMEGEKYSS 311

Query: 1335 HRLLRSVKNRFGSTDELGVFEMSQSGLQAVPNPSEIFLSQQQIDSEILAGLAVTVIMDGS 1514
            HRLLR VKNRFGSTDELGVFEMSQ GL  V NPSEIFL++Q  DS+ LAGLAV VIMDGS
Sbjct: 312  HRLLRPVKNRFGSTDELGVFEMSQLGLAVVSNPSEIFLTEQHSDSDFLAGLAVAVIMDGS 371

Query: 1515 RSFVIEIQALCVASSTNSRQVTGLQTSRADLIISVLMKQAGLKLQENGIFLNVVSGLTLS 1694
            RSF+IEIQALCV+ S+ SR + G+Q+SRAD+IISVL+KQAGL LQEN IFLNVVSG+ L+
Sbjct: 372  RSFLIEIQALCVSGSSVSRHINGIQSSRADMIISVLIKQAGLMLQENAIFLNVVSGVMLT 431

Query: 1695 ETAGDLAVAAAICSSFL 1745
            ETAGD+A+AAAICSSFL
Sbjct: 432  ETAGDVAIAAAICSSFL 448


>emb|CAN82495.1| hypothetical protein VITISV_033044 [Vitis vinifera]
          Length = 647

 Score =  560 bits (1443), Expect = e-157
 Identities = 324/545 (59%), Positives = 372/545 (68%), Gaps = 12/545 (2%)
 Frame = +3

Query: 138  LIHARKHF-LNLSTRLSCKYSLNPNFYPQFYTTPQRSIHCTNHLNSW--TSFDSGPKNDT 308
            L+  +KH  ++ S  +S +   NPNF         R   CTNH  S   TS D+      
Sbjct: 13   LLSPKKHIPISPSPLISFQSHQNPNF--------SRHFRCTNHRRSEESTSLDADSPGIG 64

Query: 309  KVTAIYDPITGSLSTERVSNVYNTNDENNQKVPKISGDGD------DGDRTYGVVKKGNL 470
              ++  D  T S S  R   V+NT       + +               R YG V K  L
Sbjct: 65   SCSSSPDGETNS-SRPRTWTVFNTEGSQYSDIQESESKSAAERSEVSEKRGYGSVGKARL 123

Query: 471  RSGLTGWKNFGAVSXXXXXXXXVKTSWVCESCGYSDGQWWGSCRSCDGVGTMKRFSEGDV 650
                    + G V          K  WVC  CG+SDG WWG+CR C+ VGTMK+FSEG+ 
Sbjct: 124  GGRYVPASSDGGVVRGRKKGKS-KVFWVCSDCGHSDGHWWGACRECNKVGTMKQFSEGES 182

Query: 651  G-EGKMASGFGVSEKMVQTWLPQQVGDVGPVRLTDVNRGVDQKEWRIPLSGLFGNEVARX 827
            G  G  ASGF VSE MV++WLPQQ  +  P RLTDVNRG++Q  WRIPL G FG+EVAR 
Sbjct: 183  GIGGSRASGFEVSENMVRSWLPQQPTETQPQRLTDVNRGINQLNWRIPLHGPFGSEVARV 242

Query: 828  XXXXXXXXXXXXXXXXXXXXKSTLLLQIAAIISEGHEMRQSAPVVYISGEESIEQIGNRA 1007
                                KSTLLLQIAAII+EGH+ R S+PVVY+SGEES+EQIGNRA
Sbjct: 243  LGGGLVPGSLVLVGGDPGAGKSTLLLQIAAIIAEGHDDR-SSPVVYVSGEESVEQIGNRA 301

Query: 1008 DRMRIGTEELFLYSSTDIEDILEKTQPLSPRALIVDSIQTVFLKGVTGSPGGLSQVKECT 1187
            DRMRI TE+LFLYSSTDIEDIL +   LSPRAL+VDSIQTV+LKGVTGS GGL QVKECT
Sbjct: 302  DRMRIETEDLFLYSSTDIEDILGQVHHLSPRALVVDSIQTVYLKGVTGSAGGLLQVKECT 361

Query: 1188 SALLRFAKKTNIPVFLIGHVNKSGDIAGPRVLEHIVDAVLYLEGEKHSSHRLLRSVKNRF 1367
            SALLRFAKKTNIPVFLIGHV KSGDIAGPRVLEHIVD      GEKHSSHRLLRSVKNRF
Sbjct: 362  SALLRFAKKTNIPVFLIGHVTKSGDIAGPRVLEHIVD------GEKHSSHRLLRSVKNRF 415

Query: 1368 GSTDELGVFEMSQSGLQAVPNPSEIFLSQQQIDSEILAGLAVTVIMDGSRSFVIEIQALC 1547
            GSTDELGVFEM+Q GLQ V NPSE+FLS++  DSEILAGLAV VIMDGSRSF++EIQALC
Sbjct: 416  GSTDELGVFEMTQLGLQVVSNPSELFLSERNSDSEILAGLAVAVIMDGSRSFLLEIQALC 475

Query: 1548 VASSTNSRQVTG--LQTSRADLIISVLMKQAGLKLQENGIFLNVVSGLTLSETAGDLAVA 1721
            ++    +RQV G  +   RA++II VLMKQAGLKLQENGIFLNVVSG+TL+ETAGD+AVA
Sbjct: 476  LSGIIFARQVKGVPVPVRRAEMIIPVLMKQAGLKLQENGIFLNVVSGVTLAETAGDVAVA 535

Query: 1722 AAICS 1736
            AAICS
Sbjct: 536  AAICS 540


>ref|NP_199845.3| ATP binding / damaged DNA binding / nucleoside-triphosphatase/
            nucleotide binding protein [Arabidopsis thaliana]
            gi|110741561|dbj|BAE98729.1| DNA repair protein-like
            [Arabidopsis thaliana] gi|332008546|gb|AED95929.1| ATP
            binding / damaged DNA binding /
            nucleoside-triphosphatase/ nucleotide binding protein
            [Arabidopsis thaliana]
          Length = 587

 Score =  547 bits (1409), Expect = e-153
 Identities = 292/472 (61%), Positives = 351/472 (74%), Gaps = 5/472 (1%)
 Frame = +3

Query: 345  LSTERVSNVYNTNDENNQKVPKISGDGDDGDRTYGVVKKGNLRSGLTGWK-NFGAVSXXX 521
            LS+  V++V++ +  N       + + +D D   G     + +SG    + N G V    
Sbjct: 44   LSSSPVASVFDLHSSNQDA----NSNREDKDTKIGFSDDKSRKSGSNPPRWNPGEVVMNK 99

Query: 522  XXXXXVKTSWVCESCGYSDGQWWGSCRSCDGVGTMKRFSEGDV----GEGKMASGFGVSE 689
                  KT WVCESCG+S+GQWWGSCR+C  VGTMKRFSEG      G G   +G G +E
Sbjct: 100  SKKGKSKTVWVCESCGHSEGQWWGSCRACHKVGTMKRFSEGSESSASGGGGNGTGLGFTE 159

Query: 690  KMVQTWLPQQVGDVGPVRLTDVNRGVDQKEWRIPLSGLFGNEVARXXXXXXXXXXXXXXX 869
                +WLP+Q   V P RLTDV  G+ Q++WRI L GLFGNEVAR               
Sbjct: 160  GKGLSWLPEQA-TVQPHRLTDVIHGITQQQWRISLPGLFGNEVARVLGGGLAPGSLILIG 218

Query: 870  XXXXXXKSTLLLQIAAIISEGHEMRQSAPVVYISGEESIEQIGNRADRMRIGTEELFLYS 1049
                  KSTLLLQIA+II+EG E+ + APV+YISGEES+EQIG+RADRMRI TEEL+L+S
Sbjct: 219  GDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQIGSRADRMRIQTEELYLFS 278

Query: 1050 STDIEDILEKTQPLSPRALIVDSIQTVFLKGVTGSPGGLSQVKECTSALLRFAKKTNIPV 1229
            S+D++DIL K   LSPRALI+DSIQTV+LK VTGS GGL+QVKECTS LLRFAKK+NIPV
Sbjct: 279  SSDLQDILNKAHRLSPRALIIDSIQTVYLKDVTGSAGGLTQVKECTSTLLRFAKKSNIPV 338

Query: 1230 FLIGHVNKSGDIAGPRVLEHIVDAVLYLEGEKHSSHRLLRSVKNRFGSTDELGVFEMSQS 1409
            FL+GHV K+GDIAGPRVLEHIVD VLYLEGE+ S++RLLRSVKNRFGSTDELGVFEM+ S
Sbjct: 339  FLVGHVTKAGDIAGPRVLEHIVDVVLYLEGEESSTYRLLRSVKNRFGSTDELGVFEMANS 398

Query: 1410 GLQAVPNPSEIFLSQQQIDSEILAGLAVTVIMDGSRSFVIEIQALCVASSTNSRQVTGLQ 1589
            GL+ V NPS I+LSQQ  DS++LAGLAV V+MDGSRSF+IE+QALC   ST SR V G+Q
Sbjct: 399  GLEVVSNPSGIYLSQQNPDSDVLAGLAVAVVMDGSRSFLIEVQALCSPGSTVSRHVNGVQ 458

Query: 1590 TSRADLIISVLMKQAGLKLQENGIFLNVVSGLTLSETAGDLAVAAAICSSFL 1745
             SRAD+II+VLMKQAGL++QENGIFLNV +G+ LSETAGDLA+AAAICSSFL
Sbjct: 459  ASRADMIIAVLMKQAGLRIQENGIFLNVANGMALSETAGDLAIAAAICSSFL 510