BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00007339
         (1847 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   807   0.0  
emb|CBI34194.3| unnamed protein product [Vitis vinifera]              803   0.0  
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   782   0.0  
ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C...   757   0.0  
ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana] g...   745   0.0  

>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  807 bits (2085), Expect = 0.0
 Identities = 397/579 (68%), Positives = 465/579 (80%)
 Frame = -3

Query: 1770 MNCVDESDVGITCFISQLPGFRGILKQRYADFIVNEVDLDGNVVHLTSLVAPPEIAEEKV 1591
            M  ++ESDVGI+ +ISQLPGFRGILKQRY DFIVNEVD DGNVVHLTSL APPE  E+  
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 1590 VKMTDEPNKSYDAEIESFRALAGDTDADSLKAFIDQINSGAEESVAHITLSPSSDKSHRT 1411
             K++D+ NK Y +EIE FR+L GD+D + LK  IDQ+ SG E+ V+ I LS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 1410 AMHNFFKENMKFLVTDTVDGPDASSKCIRVRLNSGGNTGRGXXXXXXXXXXXXSYDSRGS 1231
            A+HNFFKEN+KFLVTDT+DGPD SSKCIRVRLNSGG+   G             +DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 1230 KNWPEHLGKFIRFHLYKENKDTQEALGVIGKMLGIQPRSFGFAGTKDKRAISTQRVTLYK 1051
             NW EH+GKF+RFHLYKENKDTQEA+G+IGKMLGIQPRSFGFAGTKDKR++STQRVT++K
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 1050 VXXXXXXXXXXXLIGMKIGDFCHVDDGLVLGQLYGNKFTITLRGVTADSDDTIKASADAL 871
                        LIG+K+GDFCHV +GLVLGQL GN+FTITLRGV ADS++TIKASADAL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 870  GRHGFINYFGLQRFGSGSVPTHIIGAALFRGEWKAAVNMILDPXXXXXXXXXXXXEYYKE 691
            GR GFINYFGLQRFGSGSVPTH+IGAAL RGEW+ AV++ILDP            EYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDPREGERDAIRKAREYYKE 360

Query: 690  SDDIEGTLRQLPRYLVAERAILQCLKKSPGNYLMALKAIPRTLRMMYVHSYQSYLWNHAA 511
            SDDIEGTLRQ PR+LVAERAILQCLKK PGNYL ALKAIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 361  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 420

Query: 510  SRRVQKYGSDQVVLGDLVHCKEEHSGKVTEEKVNALFNTDFEDDICDDTYDCSHLDDISN 331
            S RVQ YG+ QVVLGDLV+CK +++     EKV  + N++F+DD C D +D SH D+IS 
Sbjct: 421  SMRVQNYGTKQVVLGDLVYCKGDNA-----EKVTRVVNSEFDDDGCSDAFDSSHFDEISE 475

Query: 330  TTAAEVKSTLVKAITQEDLLAGNYTVEDVILPLPGSRVMYPLNDIGEVYHDLAKKDDVNL 151
            T   E ++  VKA+  EDLL GNYT++DV+LPLPGSR +YP NDI +VYHD AKKD ++L
Sbjct: 476  TDLPEERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISL 535

Query: 150  QESSHGIKEFSITSMTGAYRRVFQKPQDYKWEILTYTDG 34
             ES+H +KEFSIT+MTG +RRVFQKP D++WE+LTYT+G
Sbjct: 536  TESAHSVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEG 574


>emb|CBI34194.3| unnamed protein product [Vitis vinifera]
          Length = 693

 Score =  803 bits (2074), Expect = 0.0
 Identities = 397/579 (68%), Positives = 465/579 (80%)
 Frame = -3

Query: 1770 MNCVDESDVGITCFISQLPGFRGILKQRYADFIVNEVDLDGNVVHLTSLVAPPEIAEEKV 1591
            M  ++ESDVGI+ +ISQLPGFRGILKQRY DFIVNEVD DGNVVHLTSL APPE  E+  
Sbjct: 1    MKHLEESDVGISFYISQLPGFRGILKQRYCDFIVNEVDSDGNVVHLTSLDAPPESMEKNE 60

Query: 1590 VKMTDEPNKSYDAEIESFRALAGDTDADSLKAFIDQINSGAEESVAHITLSPSSDKSHRT 1411
             K++D+ NK Y +EIE FR+L GD+D + LK  IDQ+ SG E+ V+ I LS SSDKSHRT
Sbjct: 61   TKISDQSNKGYASEIELFRSLVGDSDVECLKGLIDQVASGIEDGVSPIVLSSSSDKSHRT 120

Query: 1410 AMHNFFKENMKFLVTDTVDGPDASSKCIRVRLNSGGNTGRGXXXXXXXXXXXXSYDSRGS 1231
            A+HNFFKEN+KFLVTDT+DGPD SSKCIRVRLNSGG+   G             +DSRGS
Sbjct: 121  AVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKPFDSRGS 180

Query: 1230 KNWPEHLGKFIRFHLYKENKDTQEALGVIGKMLGIQPRSFGFAGTKDKRAISTQRVTLYK 1051
             NW EH+GKF+RFHLYKENKDTQEA+G+IGKMLGIQPRSFGFAGTKDKR++STQRVT++K
Sbjct: 181  DNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQRVTVFK 240

Query: 1050 VXXXXXXXXXXXLIGMKIGDFCHVDDGLVLGQLYGNKFTITLRGVTADSDDTIKASADAL 871
                        LIG+K+GDFCHV +GLVLGQL GN+FTITLRGV ADS++TIKASADAL
Sbjct: 241  QHANRLAALNERLIGIKVGDFCHVREGLVLGQLLGNRFTITLRGVVADSEETIKASADAL 300

Query: 870  GRHGFINYFGLQRFGSGSVPTHIIGAALFRGEWKAAVNMILDPXXXXXXXXXXXXEYYKE 691
            GR GFINYFGLQRFGSGSVPTH+IGAAL RGEW+ AV++ILDP            EYYKE
Sbjct: 301  GRLGFINYFGLQRFGSGSVPTHLIGAALLRGEWETAVSLILDP-REGDILLLKAREYYKE 359

Query: 690  SDDIEGTLRQLPRYLVAERAILQCLKKSPGNYLMALKAIPRTLRMMYVHSYQSYLWNHAA 511
            SDDIEGTLRQ PR+LVAERAILQCLKK PGNYL ALKAIPRTLRMMYVHSYQSYLWNHAA
Sbjct: 360  SDDIEGTLRQFPRHLVAERAILQCLKKYPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAA 419

Query: 510  SRRVQKYGSDQVVLGDLVHCKEEHSGKVTEEKVNALFNTDFEDDICDDTYDCSHLDDISN 331
            S RVQ YG+ QVVLGDLV+CK +++     EKV  + N++F+DD C D +D SH D+IS 
Sbjct: 420  SMRVQNYGTKQVVLGDLVYCKGDNA-----EKVTRVVNSEFDDDGCSDAFDSSHFDEISE 474

Query: 330  TTAAEVKSTLVKAITQEDLLAGNYTVEDVILPLPGSRVMYPLNDIGEVYHDLAKKDDVNL 151
            T   E ++  VKA+  EDLL GNYT++DV+LPLPGSR +YP NDI +VYHD AKKD ++L
Sbjct: 475  TDLPEERNDPVKALDAEDLLTGNYTIDDVVLPLPGSRAIYPTNDIAQVYHDFAKKDAISL 534

Query: 150  QESSHGIKEFSITSMTGAYRRVFQKPQDYKWEILTYTDG 34
             ES+H +KEFSIT+MTG +RRVFQKP D++WE+LTYT+G
Sbjct: 535  TESAHSVKEFSITNMTGGFRRVFQKPIDFEWELLTYTEG 573


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  782 bits (2019), Expect = 0.0
 Identities = 401/594 (67%), Positives = 467/594 (78%), Gaps = 15/594 (2%)
 Frame = -3

Query: 1770 MNCVDESDVGITCFISQLPGFRGILKQRYADFIVNEVDLDGNVVHLTSLVAPPEI---AE 1600
            M  ++ESDVGI+C+IS++PGFRGILKQRY+DFIVNEVD +GNVVHLTSL  P EI   AE
Sbjct: 49   MTTIEESDVGISCYISKVPGFRGILKQRYSDFIVNEVDNNGNVVHLTSLHVPREIVEVAE 108

Query: 1599 EKVVKMTDEPNKSYDAEIESFRALAGDTDADSLKAFIDQINSGAE-ESVAHITLSPSSDK 1423
            E+  ++T++  K+Y AEIESFR LAGD D   L+AFI+Q+ S     +++ I LSP SDK
Sbjct: 109  EREEEITNQVGKNYAAEIESFRELAGDADTQRLEAFINQVISEDNCINISPILLSPDSDK 168

Query: 1422 SHRTAMHNFFKENMKFLVTDTVDGPDASSKCIRVRLNSGGNTGRGXXXXXXXXXXXXS-Y 1246
            +HRTA HNFFKE +KFLVTDTVDGPDASSKCIRVRLNS GN   G              +
Sbjct: 169  AHRTATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDKPF 228

Query: 1245 DSRGSKNWPEHLGKFIRFHLYKENKDTQEALGVIGKMLGIQPRSFGFAGTKDKRAISTQR 1066
            DSRGS +WPEHLGKF+RFHLYKENKDTQEA+G+IGKMLGIQPRSFGFAGTKDKR++STQR
Sbjct: 229  DSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQR 288

Query: 1065 VTLYKVXXXXXXXXXXXLIGMKIGDFCHVDDGLVLGQLYGNKFTITLRGVTADSDDTIKA 886
            VT++K            LIG+K+GDFC+V++GL+LGQL GN+FT+TLRGV ADS+DTIK 
Sbjct: 289  VTVFKQHASRLAALNDRLIGIKVGDFCYVNEGLLLGQLLGNRFTVTLRGVVADSEDTIKG 348

Query: 885  SADALGRHGFINYFGLQRFGSGSVPTHIIGAALFRGEWKAAVNMILDP-------XXXXX 727
            SAD+LGRHGFINYFGLQRFGSGSVPTH+IGAAL RGEWK AV+MILDP            
Sbjct: 349  SADSLGRHGFINYFGLQRFGSGSVPTHLIGAALLRGEWKYAVSMILDPREGDILLLVICF 408

Query: 726  XXXXXXXEYYKESDDIEGTLRQLPRYLVAERAILQCLKKSPGNYLMALKAIPRTLRMMYV 547
                   EYYKESDDI+GTLRQLPRYL AERA+LQCLKK PGNYL ALKAIPRTLRMMYV
Sbjct: 409  MWMRMAREYYKESDDIDGTLRQLPRYLTAERAVLQCLKKCPGNYLQALKAIPRTLRMMYV 468

Query: 546  HSYQSYLWNHAASRRVQKYGSDQVVLGDLVHCKEEHSGKVTEEKVNALFNTDFEDDICDD 367
            HSYQSYLWNHAAS RVQKYG+DQVV+GDLV+CK    G  TE ++ +  N+  EDD C+D
Sbjct: 469  HSYQSYLWNHAASMRVQKYGTDQVVVGDLVYCK----GDDTEREIGSA-NSACEDDDCED 523

Query: 366  TYDCSHLDDISNTTAAEVKSTLVK---AITQEDLLAGNYTVEDVILPLPGSRVMYPLNDI 196
             Y CS+LD+ S T  +E K TLVK   A+  EDL  GNYT+ DVILP+PGSRV YP NDI
Sbjct: 524  MYGCSNLDETSGTDLSERKDTLVKVEQAVNAEDLSTGNYTINDVILPMPGSRVSYPTNDI 583

Query: 195  GEVYHDLAKKDDVNLQESSHGIKEFSITSMTGAYRRVFQKPQDYKWEILTYTDG 34
             +VYHDLA+KD +NL ES H  KEFSITSMTG+YRRVFQKP D++WEIL+YTDG
Sbjct: 584  AKVYHDLAEKDAINLAESVHSAKEFSITSMTGSYRRVFQKPMDFEWEILSYTDG 637


>ref|XP_004142573.1| PREDICTED: putative pseudouridine synthase C1A4.09-like [Cucumis
            sativus]
          Length = 719

 Score =  757 bits (1954), Expect = 0.0
 Identities = 375/582 (64%), Positives = 453/582 (77%), Gaps = 3/582 (0%)
 Frame = -3

Query: 1773 TMNCVDESDVGITCFISQLPGFRGILKQRYADFIVNEVDLDGNVVHLTSLVAPPE-IAEE 1597
            T   V ESDVGI  +IS LPGFRGILKQRY+DFIVNEVD DGNVVHLTSL APPE I  E
Sbjct: 39   TTKSVGESDVGILSYISSLPGFRGILKQRYSDFIVNEVDTDGNVVHLTSLDAPPEVIVSE 98

Query: 1596 KVVKMTDEPNKSYDAEIESFRALAGDTDADSLKAFIDQINSGAEESVAHITLSPSSDKSH 1417
                +    ++SY +EIE FR+LAGD+DA+ L+ F+ QINSG  + +  I  SP +DK+H
Sbjct: 99   SGPTIVHSTSQSYASEIELFRSLAGDSDAEILEIFLKQINSGVNDDILPIVFSPDTDKTH 158

Query: 1416 RTAMHNFFKENMKFLVTDTVDGPDASSKCIRVRLNSGGNTGRGXXXXXXXXXXXXSYDSR 1237
            RTA+HNFFK+  KFLVTDT+DGPD+SSKC+RVR++SG    RG             +DSR
Sbjct: 159  RTAVHNFFKK-FKFLVTDTIDGPDSSSKCVRVRVDSGAQNNRGRFSKKRKERGDKPFDSR 217

Query: 1236 GSKNWPEHLGKFIRFHLYKENKDTQEALGVIGKMLGIQPRSFGFAGTKDKRAISTQRVTL 1057
            GS NWPEH+GKF+RFHLYKENKDTQEALG+IGKMLGIQ RSFGFAGTKDKR+ISTQRVT+
Sbjct: 218  GSDNWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGIQTRSFGFAGTKDKRSISTQRVTV 277

Query: 1056 YKVXXXXXXXXXXXLIGMKIGDFCHVDDGLVLGQLYGNKFTITLRGVTADSDDTIKASAD 877
            +K            LIG+K+G+F ++ +GL+LGQL GN+FTITLRGV A+S+D IKASA+
Sbjct: 278  FKQHASRIAALNDRLIGIKLGNFSYIQEGLLLGQLLGNRFTITLRGVVANSEDVIKASAE 337

Query: 876  ALGRHGFINYFGLQRFGSGSVPTHIIGAALFRGEWKAAVNMILDPXXXXXXXXXXXXEYY 697
            ALGRHGFINYFGLQRFGSGSVPTH++GA+L RGEWK AVNMILDP            +YY
Sbjct: 338  ALGRHGFINYFGLQRFGSGSVPTHLVGASLLRGEWKGAVNMILDPREGDILLLMRARDYY 397

Query: 696  KESDDIEGTLRQLPRYLVAERAILQCLKKSPGNYLMALKAIPRTLRMMYVHSYQSYLWNH 517
            KESDDI+GTL+QLPRYLVAERAILQCLKK PGNYL ALKAIPRTLRMMYVHSYQSYLWNH
Sbjct: 398  KESDDIDGTLKQLPRYLVAERAILQCLKKCPGNYLQALKAIPRTLRMMYVHSYQSYLWNH 457

Query: 516  AASRRVQKYGSDQVVLGDLVHCKEEHSGKVTEEKVNALFNTDFEDDICDD--TYDCSHLD 343
            AAS RVQKYG D+VV+GDLV+CKE H+     E      + ++ED+ C D  +YD  HL+
Sbjct: 458  AASMRVQKYGIDKVVVGDLVYCKENHT-----ETAAVQNSEEYEDEDCGDANSYDSCHLE 512

Query: 342  DISNTTAAEVKSTLVKAITQEDLLAGNYTVEDVILPLPGSRVMYPLNDIGEVYHDLAKKD 163
            ++        +  LVKA+T  D+L+GN+T++DV+LPLPGSRV+YP NDI EVY+DLA KD
Sbjct: 513  EVCKLGLPTERHKLVKAVTAGDVLSGNFTIDDVVLPLPGSRVLYPTNDIAEVYNDLATKD 572

Query: 162  DVNLQESSHGIKEFSITSMTGAYRRVFQKPQDYKWEILTYTD 37
             ++L  S H +KEFSITSMTG+YRRVFQ+P+DY+WE+++Y D
Sbjct: 573  SISLTNSVHNVKEFSITSMTGSYRRVFQRPKDYEWELISYVD 614


>ref|NP_187133.3| pseudouridine synthase [Arabidopsis thaliana]
            gi|52354299|gb|AAU44470.1| hypothetical protein AT3G04820
            [Arabidopsis thaliana] gi|61742699|gb|AAX55170.1|
            hypothetical protein At3g04820 [Arabidopsis thaliana]
            gi|332640619|gb|AEE74140.1| pseudouridine synthase
            [Arabidopsis thaliana]
          Length = 715

 Score =  745 bits (1923), Expect = 0.0
 Identities = 369/582 (63%), Positives = 448/582 (76%), Gaps = 2/582 (0%)
 Frame = -3

Query: 1776 ETMNCVDESDVGITCFISQLPGFRGILKQRYADFIVNEVDLDGNVVHLTSLVAPPEIA-- 1603
            E M  VDE+DVGI+CFISQLPGFRGILKQRYADFIVNEVD+DGNVVHLTSL  PPE+A  
Sbjct: 35   EGMKTVDEADVGISCFISQLPGFRGILKQRYADFIVNEVDMDGNVVHLTSLDLPPEMAVK 94

Query: 1602 EEKVVKMTDEPNKSYDAEIESFRALAGDTDADSLKAFIDQINSGAEESVAHITLSPSSDK 1423
            EE   K  D   ++Y + +ESF++++  TDA+ L+  I+Q+ SG +  V  + L PSSDK
Sbjct: 95   EEDKAKSCDNVPQNYTSAVESFKSISSVTDAERLEILINQVTSGTDGEVLPVVLDPSSDK 154

Query: 1422 SHRTAMHNFFKENMKFLVTDTVDGPDASSKCIRVRLNSGGNTGRGXXXXXXXXXXXXSYD 1243
            S RTA+HNF KEN KFLVTDTVDGPD++SKCIRVR+NSG N  RG             +D
Sbjct: 155  SKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKPFD 214

Query: 1242 SRGSKNWPEHLGKFIRFHLYKENKDTQEALGVIGKMLGIQPRSFGFAGTKDKRAISTQRV 1063
            SRGS++WPEH+GKF+RFHLYKENKDTQEALG+IGKMLG+QP+SFGF+GTKDKR++STQRV
Sbjct: 215  SRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQRV 274

Query: 1062 TLYKVXXXXXXXXXXXLIGMKIGDFCHVDDGLVLGQLYGNKFTITLRGVTADSDDTIKAS 883
            T++K            L G+K+GDFC+V +GL+LGQL GN+FTITLRGV ADS++TIK S
Sbjct: 275  TVFKQQASKLAALNKRLFGIKVGDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQS 334

Query: 882  ADALGRHGFINYFGLQRFGSGSVPTHIIGAALFRGEWKAAVNMILDPXXXXXXXXXXXXE 703
            A++LG+ GFINYFGLQRFGSGSVPTH +GAAL +GEWK AV+MILDP            E
Sbjct: 335  AESLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAVDMILDPRETERHVVNDARE 394

Query: 702  YYKESDDIEGTLRQLPRYLVAERAILQCLKKSPGNYLMALKAIPRTLRMMYVHSYQSYLW 523
            YYKE+ DI+GTLRQLPRYLVAERAILQCLKK PGNYL ALK IPRTLRMMYVHSYQSYLW
Sbjct: 395  YYKETGDIDGTLRQLPRYLVAERAILQCLKKCPGNYLQALKGIPRTLRMMYVHSYQSYLW 454

Query: 522  NHAASRRVQKYGSDQVVLGDLVHCKEEHSGKVTEEKVNALFNTDFEDDICDDTYDCSHLD 343
            N+AAS RV+ YG+ QVVLGDLV  K + + ++ +        T   ++  ++  DC  +D
Sbjct: 455  NNAASLRVKNYGTSQVVLGDLVSTKVDAAKRMVDSL------TSEHNESSEEALDCDQVD 508

Query: 342  DISNTTAAEVKSTLVKAITQEDLLAGNYTVEDVILPLPGSRVMYPLNDIGEVYHDLAKKD 163
            D +       +S LVK ++ EDL AG Y+  D++LPLPGSRV+YP NDI E+YHDLAKKD
Sbjct: 509  DTAVVDLPAERSDLVKVVSIEDLEAGTYSTSDIVLPLPGSRVIYPSNDIAEIYHDLAKKD 568

Query: 162  DVNLQESSHGIKEFSITSMTGAYRRVFQKPQDYKWEILTYTD 37
             ++L ES HG+KEFSITSMTG YRRVFQKP D++WE+LTYTD
Sbjct: 569  GISLTESIHGVKEFSITSMTGGYRRVFQKPIDFEWELLTYTD 610