BLASTX nr result
ID: Cnidium21_contig00007088
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00007088
(1947 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arab... 529 e-148
ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidops... 528 e-147
sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large... 528 e-147
gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 190... 528 e-147
sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large... 528 e-147
>ref|XP_002888120.1| hypothetical protein ARALYDRAFT_475241 [Arabidopsis lyrata subsp.
lyrata] gi|297333961|gb|EFH64379.1| hypothetical protein
ARALYDRAFT_475241 [Arabidopsis lyrata subsp. lyrata]
Length = 589
Score = 529 bits (1363), Expect = e-148
Identities = 272/412 (66%), Positives = 313/412 (75%), Gaps = 5/412 (1%)
Frame = -3
Query: 1480 SGFDMAPT--VSTTTPGAPGQQQEVPQA--MPGMFQNMFPFGTAQ-MGAVPMMPAQAMTQ 1316
SGFDMAP ++ T A GQ VP +PGMF NMFP Q +GA+P++P QAMTQ
Sbjct: 189 SGFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFPNMFPMVPGQQLGALPVLPVQAMTQ 248
Query: 1315 QATRHARRVYVGGLPPLANEQTIATFFSHIMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 1136
QATRHARRVYVGGLPP ANEQ++ATFFS +M+AIGGN+AGPGDAVVNVYINHEKKFAFVE
Sbjct: 249 QATRHARRVYVGGLPPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 308
Query: 1135 MRTVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPNPHXXXXXXXXXXXXX 956
MR+VEEASNAMALDGI+ EGV V+VRRPTDYNPSLAA LGPSQPNP+
Sbjct: 309 MRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLSSGST 368
Query: 955 XXXXGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYEDQGA 776
GPDRIFVGGLPYYFTEVQIRELLESFGPLRGF+LVKDR+TGNSKGY FCVY+D
Sbjct: 369 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 428
Query: 775 TDVACAALNGLKMGDKTLTVRRATISNGQVKSEQESXXXXXXXXXXXQKMALQVGGVNLP 596
TD+ACAALNG+KMGDKTLTVRRA Q K EQE Q++ LQ GG
Sbjct: 429 TDIACAALNGIKMGDKTLTVRRAIQGVIQPKPEQEEVLLHAQQQIALQRLMLQPGG---- 484
Query: 595 GVGTDEATATPTKILCLSEVITADELMDDGEYEEILEDMKDEGGKFGDLVSVVIPRPSPS 416
TPTKI+CL++V+TAD+L DD EY +I+EDM+ EGGKFG+LV+VVIPRP+P
Sbjct: 485 ---------TPTKIVCLTQVVTADDLRDDEEYADIMEDMRQEGGKFGNLVNVVIPRPNPD 535
Query: 415 GEQSEGLGKVFLEYADTTGCSNARESLSGRKFGGNSVIAVYYPEDKFYNGDY 260
+ + G+GKVFLEYAD G S AR ++GRKFGGN V+AVYYPEDK+ GDY
Sbjct: 536 HDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYLQGDY 587
>ref|NP_176287.3| Splicing factor U2af large subunit B [Arabidopsis thaliana]
gi|209572798|sp|Q8L716.2|U2A2B_ARATH RecName:
Full=Splicing factor U2af large subunit B; AltName:
Full=U2 auxiliary factor 65 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
large subunit B; Short=U2 snRNP auxiliary factor large
subunit B gi|332195625|gb|AEE33746.1| Splicing factor
U2af large subunit B [Arabidopsis thaliana]
Length = 589
Score = 528 bits (1360), Expect = e-147
Identities = 271/412 (65%), Positives = 312/412 (75%), Gaps = 5/412 (1%)
Frame = -3
Query: 1480 SGFDMAPT--VSTTTPGAPGQQQEVPQA--MPGMFQNMFPFGTAQ-MGAVPMMPAQAMTQ 1316
SGFDMAP ++ T A GQ VP +PGMF NMFP Q +GA+P++P QAMTQ
Sbjct: 189 SGFDMAPPDMLAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQ 248
Query: 1315 QATRHARRVYVGGLPPLANEQTIATFFSHIMTAIGGNSAGPGDAVVNVYINHEKKFAFVE 1136
QATRHARRVYVGGLPP ANEQ+++TFFS +M+AIGGN+AGPGDAVVNVYINHEKKFAFVE
Sbjct: 249 QATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVE 308
Query: 1135 MRTVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPNPHXXXXXXXXXXXXX 956
MR+VEEASNAMALDGI+ EGV V+VRRPTDYNPSLAA LGPSQPNP+
Sbjct: 309 MRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGST 368
Query: 955 XXXXGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYEDQGA 776
GPDRIFVGGLPYYFTEVQIRELLESFGPLRGF+LVKDR+TGNSKGY FCVY+D
Sbjct: 369 GGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSV 428
Query: 775 TDVACAALNGLKMGDKTLTVRRATISNGQVKSEQESXXXXXXXXXXXQKMALQVGGVNLP 596
TD+ACAALNG+KMGDKTLTVRRA Q K EQE Q++ Q GG
Sbjct: 429 TDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG---- 484
Query: 595 GVGTDEATATPTKILCLSEVITADELMDDGEYEEILEDMKDEGGKFGDLVSVVIPRPSPS 416
TPTKI+CL++V+TAD+L DD EY EI+EDM+ EGGKFG+LV+VVIPRP+P
Sbjct: 485 ---------TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPD 535
Query: 415 GEQSEGLGKVFLEYADTTGCSNARESLSGRKFGGNSVIAVYYPEDKFYNGDY 260
+ + G+GKVFLEYAD G S AR ++GRKFGGN V+AVYYPEDK+ GDY
Sbjct: 536 HDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587
>sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa
subunit B; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit B;
Short=U2 snRNP auxiliary factor large subunit B
gi|3850821|emb|CAA77135.1| U2 snRNP auxiliary factor,
large subunit [Nicotiana plumbaginifolia]
Length = 573
Score = 528 bits (1360), Expect = e-147
Identities = 270/410 (65%), Positives = 308/410 (75%), Gaps = 3/410 (0%)
Frame = -3
Query: 1480 SGFDMAPTVSTTTPGAPGQQQEVPQA---MPGMFQNMFPFGTAQMGAVPMMPAQAMTQQA 1310
SGFDMAP S PG +VP +PGMF NMFP + Q GA+P+MP QAMTQQA
Sbjct: 175 SGFDMAPPTSAMLPGITAAAGQVPGTNPPIPGMFPNMFPLASGQFGALPVMPIQAMTQQA 234
Query: 1309 TRHARRVYVGGLPPLANEQTIATFFSHIMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 1130
TRHARRVYVGGLP ANEQ++ATFFSH+M+AIGGN+AGPGDAVVNVYIN+EKKFAFVEMR
Sbjct: 235 TRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMR 294
Query: 1129 TVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPNPHXXXXXXXXXXXXXXX 950
+VEEASNAMALDGI+FEG +VRRP+DYNPSLAA LGPSQPNP+
Sbjct: 295 SVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGG 354
Query: 949 XXGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYEDQGATD 770
GPDRIFVGGLPYYFTE QIRELLESFGPLRGFDLVKDR+TGNSKGY FCVY+D TD
Sbjct: 355 LEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 414
Query: 769 VACAALNGLKMGDKTLTVRRATISNGQVKSEQESXXXXXXXXXXXQKMALQVGGVNLPGV 590
+ACAALNG+KMGDKTLTVRRA Q K EQES Q++ LQ
Sbjct: 415 IACAALNGIKMGDKTLTVRRANQGTTQPKPEQESVLLHAQQQIALQRLMLQ--------- 465
Query: 589 GTDEATATPTKILCLSEVITADELMDDGEYEEILEDMKDEGGKFGDLVSVVIPRPSPSGE 410
TK+L L+EVI+ADEL DD +Y++ILEDM+ E GKFG LV+VVIPRPSP+GE
Sbjct: 466 ----PATLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGE 521
Query: 409 QSEGLGKVFLEYADTTGCSNARESLSGRKFGGNSVIAVYYPEDKFYNGDY 260
+ G+GKVFLEYAD S AR+SL+GRKFGGN V+AV+YPE+KFY GDY
Sbjct: 522 PTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDY 571
>gb|AAG51641.1|AC018908_7 putative U2 snRNP auxiliary factor; 19096-22891 [Arabidopsis
thaliana]
Length = 568
Score = 528 bits (1359), Expect = e-147
Identities = 271/413 (65%), Positives = 311/413 (75%), Gaps = 6/413 (1%)
Frame = -3
Query: 1480 SGFDMAPT---VSTTTPGAPGQQQEVPQA--MPGMFQNMFPFGTAQ-MGAVPMMPAQAMT 1319
SGFDMAP +T A GQ VP +PGMF NMFP Q +GA+P++P QAMT
Sbjct: 167 SGFDMAPPDMLAATAVAAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMT 226
Query: 1318 QQATRHARRVYVGGLPPLANEQTIATFFSHIMTAIGGNSAGPGDAVVNVYINHEKKFAFV 1139
QQATRHARRVYVGGLPP ANEQ+++TFFS +M+AIGGN+AGPGDAVVNVYINHEKKFAFV
Sbjct: 227 QQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFV 286
Query: 1138 EMRTVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPNPHXXXXXXXXXXXX 959
EMR+VEEASNAMALDGI+ EGV V+VRRPTDYNPSLAA LGPSQPNP+
Sbjct: 287 EMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGS 346
Query: 958 XXXXXGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYEDQG 779
GPDRIFVGGLPYYFTEVQIRELLESFGPLRGF+LVKDR+TGNSKGY FCVY+D
Sbjct: 347 TGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPS 406
Query: 778 ATDVACAALNGLKMGDKTLTVRRATISNGQVKSEQESXXXXXXXXXXXQKMALQVGGVNL 599
TD+ACAALNG+KMGDKTLTVRRA Q K EQE Q++ Q GG
Sbjct: 407 VTDIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGG--- 463
Query: 598 PGVGTDEATATPTKILCLSEVITADELMDDGEYEEILEDMKDEGGKFGDLVSVVIPRPSP 419
TPTKI+CL++V+TAD+L DD EY EI+EDM+ EGGKFG+LV+VVIPRP+P
Sbjct: 464 ----------TPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNP 513
Query: 418 SGEQSEGLGKVFLEYADTTGCSNARESLSGRKFGGNSVIAVYYPEDKFYNGDY 260
+ + G+GKVFLEYAD G S AR ++GRKFGGN V+AVYYPEDK+ GDY
Sbjct: 514 DHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 566
>sp|Q9ZR39.1|U2A2A_NICPL RecName: Full=Splicing factor U2af large subunit A; AltName:
Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa
subunit A; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit A;
Short=U2 snRNP auxiliary factor large subunit A
gi|3850823|emb|CAA77136.1| U2 snRNP auxiliary factor,
large subunit [Nicotiana plumbaginifolia]
Length = 555
Score = 528 bits (1359), Expect = e-147
Identities = 270/412 (65%), Positives = 309/412 (75%), Gaps = 3/412 (0%)
Frame = -3
Query: 1480 SGFDMAPTVSTTTPGAPGQQQEVP---QAMPGMFQNMFPFGTAQMGAVPMMPAQAMTQQA 1310
SGFDMAP + PGA +VP A+PG+F NMFP ++Q GA+PMMP QAMTQQA
Sbjct: 157 SGFDMAPPTTALLPGATDAAGQVPGTNPAIPGLFSNMFPLASSQFGALPMMPVQAMTQQA 216
Query: 1309 TRHARRVYVGGLPPLANEQTIATFFSHIMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMR 1130
TRHARRVYVGGLPP ANEQ++ATFFSH+M AIGGN+AGPGDAVVNVYINHEKKFAFVEMR
Sbjct: 217 TRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMR 276
Query: 1129 TVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPNPHXXXXXXXXXXXXXXX 950
+VEEASNAMALDG++FEG V+VRRP+DYNPSLAA LGPSQP+P+
Sbjct: 277 SVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGG 336
Query: 949 XXGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYEDQGATD 770
GPDRIFVGGLPYYFTE QIRELLESFG LRGFDLVKDR+TGNSKGY FCVY+D TD
Sbjct: 337 LEGPDRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVYQDVSVTD 396
Query: 769 VACAALNGLKMGDKTLTVRRATISNGQVKSEQESXXXXXXXXXXXQKMALQVGGVNLPGV 590
+ACAALNG+KMGDKTLTVRRA Q EQES Q+ LQ G
Sbjct: 397 IACAALNGIKMGDKTLTVRRANQGTTQPNPEQESVLLHAQQQIALQRFMLQPG------- 449
Query: 589 GTDEATATPTKILCLSEVITADELMDDGEYEEILEDMKDEGGKFGDLVSVVIPRPSPSGE 410
A TK+LCL+EV+T DEL DD +Y++ILEDM+ E KFG LV+VVIPRP+P+G
Sbjct: 450 ------ALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGV 503
Query: 409 QSEGLGKVFLEYADTTGCSNARESLSGRKFGGNSVIAVYYPEDKFYNGDYGA 254
+ GLGKVFLEYAD G S AR+ L+GRKFGGN V+AV+YPE+KF GDY A
Sbjct: 504 PTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYEA 555