BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00006883
         (1602 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004135957.1| PREDICTED: photosystem II stability/assembly...   592   e-166
ref|XP_003540641.1| PREDICTED: photosystem II stability/assembly...   587   e-165
ref|XP_003607248.1| Photosystem II stability/assembly factor HCF...   578   e-162
ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly...   578   e-162
ref|NP_197703.1| photosystem II stability/assembly factor HCF136...   578   e-162

>ref|XP_004135957.1| PREDICTED: photosystem II stability/assembly factor HCF136,
            chloroplastic-like [Cucumis sativus]
            gi|449488796|ref|XP_004158174.1| PREDICTED: photosystem
            II stability/assembly factor HCF136, chloroplastic-like
            [Cucumis sativus]
          Length = 406

 Score =  592 bits (1525), Expect = e-166
 Identities = 298/405 (73%), Positives = 335/405 (82%), Gaps = 14/405 (3%)
 Frame = +2

Query: 167  ILKSSFFNSLSTITT----------FLPRN-SKTRNRIAVPKASLNRRQLLXXXXXXXXX 313
            +LK S+ +SL   +T           LPR  S T  + ++  +S+NRR  +         
Sbjct: 8    LLKPSWTSSLFASSTSPRHSLSQPQLLPRTLSSTTPKASLHNSSINRRHFVADTAAA--- 64

Query: 314  XXXISLGSSAFVLP---ARSEDQLSEWERVSLPIDPGVVLLDIAFVPDDPSHGFLLGTRQ 484
               +SL  S F+ P   A+SE+ LSEWER+ LPIDPGVVLLDIAFVPDD +HGFLLGTRQ
Sbjct: 65   ---VSLSLSPFIAPVQPAKSEESLSEWERLYLPIDPGVVLLDIAFVPDDMNHGFLLGTRQ 121

Query: 485  TLLETKDRGSTWAPRSIPSAEDEDFNYRFNCISFQGKEGWIVGKPAILLHTSDGGDSWER 664
            T+LETKD G TWAPRSIPSAE+EDFNYRFN ISF+GKEGWIVGKPAILL+TSD G+SWER
Sbjct: 122  TILETKDGGRTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLYTSDAGESWER 181

Query: 665  IPLSAELPGDMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSG 844
            IPLSA+LPGDMVYIKATG+KSAEMVTDEGAIYVTSN+GYNWKAAVQETVSATLNRTVSSG
Sbjct: 182  IPLSAQLPGDMVYIKATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSG 241

Query: 845  ISGASYYTGTFNTVNRSPEGNYVAVSSRGNFYLTWEPGQPYWQPHNRSVARRIQNMGWRA 1024
            ISGASYYTGTFNTVNRSP+G YVAVSSRGNFYLTWEPGQP+WQPHNR++ARRIQNMGWRA
Sbjct: 242  ISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAIARRIQNMGWRA 301

Query: 1025 DXXXXXXXXXXXXXXSKGTGITEEFNEIPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKT 1204
            D              SKGTGI+EEF E+PVQSRGFGILDVGYRS++EAWAAGGSGVLLKT
Sbjct: 302  DGGLWLLVRGGGLFLSKGTGISEEFEEVPVQSRGFGILDVGYRSKEEAWAAGGSGVLLKT 361

Query: 1205 KNSGKTWTRDRAADNIAANLYSVKFINDKQGFVLGNDGVLLKYLG 1339
             N G++WTRD+AADNIAANLYSVKFINDK+GFVLGNDGVLL+YLG
Sbjct: 362  TNGGRSWTRDKAADNIAANLYSVKFINDKKGFVLGNDGVLLQYLG 406


>ref|XP_003540641.1| PREDICTED: photosystem II stability/assembly factor HCF136,
            chloroplastic-like [Glycine max]
          Length = 393

 Score =  587 bits (1514), Expect = e-165
 Identities = 294/391 (75%), Positives = 324/391 (82%), Gaps = 1/391 (0%)
 Frame = +2

Query: 170  LKSSFFNSLSTITTFLPRNSK-TRNRIAVPKASLNRRQLLXXXXXXXXXXXXISLGSSAF 346
            L+ +F +S +     LP     +RNR  + KAS +                  +L  S  
Sbjct: 4    LRLTFSDSTTLFRPSLPSTRTFSRNRSLIVKASSSEDDF-SRSSRRRFIAETAALSVSLP 62

Query: 347  VLPARSEDQLSEWERVSLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTLLETKDRGSTWAP 526
             L ARSED LSEWERV LPIDPGVVLLDIAFVPDDP+HGFLLGTRQT+LETKD G+TWAP
Sbjct: 63   QLTARSEDALSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAP 122

Query: 527  RSIPSAEDEDFNYRFNCISFQGKEGWIVGKPAILLHTSDGGDSWERIPLSAELPGDMVYI 706
            RSIPSAEDEDFNYRFN ISF+GKEGWIVGKP+ILL+TSD GDSWERIPLSAELPGDMVYI
Sbjct: 123  RSIPSAEDEDFNYRFNSISFKGKEGWIVGKPSILLYTSDAGDSWERIPLSAELPGDMVYI 182

Query: 707  KATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTV 886
            KATG+KSAEMVTDEGAIYVT+NRGYNW+AAVQETVSATLNRTVSSGISGASYYTGTFNTV
Sbjct: 183  KATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTV 242

Query: 887  NRSPEGNYVAVSSRGNFYLTWEPGQPYWQPHNRSVARRIQNMGWRADXXXXXXXXXXXXX 1066
            NRSP+G YVAVSSRGNFYLTWEPGQP+WQPHNR+VARRIQNMGWRAD             
Sbjct: 243  NRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLY 302

Query: 1067 XSKGTGITEEFNEIPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTKNSGKTWTRDRAAD 1246
             SKG G+TEEF E+PVQSRGFGILDVGYRS DEAWAAGGSG+LL+T N GK+W RD+AAD
Sbjct: 303  LSKGKGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAAD 362

Query: 1247 NIAANLYSVKFINDKQGFVLGNDGVLLKYLG 1339
            NIAANLYSVKFI++K+GFVLGNDGVLL+YLG
Sbjct: 363  NIAANLYSVKFIDEKKGFVLGNDGVLLRYLG 393


>ref|XP_003607248.1| Photosystem II stability/assembly factor HCF136 [Medicago truncatula]
            gi|355508303|gb|AES89445.1| Photosystem II
            stability/assembly factor HCF136 [Medicago truncatula]
          Length = 396

 Score =  578 bits (1491), Expect = e-162
 Identities = 280/328 (85%), Positives = 298/328 (90%)
 Frame = +2

Query: 356  ARSEDQLSEWERVSLPIDPGVVLLDIAFVPDDPSHGFLLGTRQTLLETKDRGSTWAPRSI 535
            A+SE+ LSEWERV LPIDPGVVLLDIAFVP DP+HGFLLGTRQTLLETKD G TWAPRSI
Sbjct: 69   AKSEETLSEWERVYLPIDPGVVLLDIAFVPQDPNHGFLLGTRQTLLETKDGGRTWAPRSI 128

Query: 536  PSAEDEDFNYRFNCISFQGKEGWIVGKPAILLHTSDGGDSWERIPLSAELPGDMVYIKAT 715
            PSAEDEDFNYRFN ISF+GKEGWIVGKPAILL+T D G+SWERIPLSAELPGDMVYIKAT
Sbjct: 129  PSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTPDAGESWERIPLSAELPGDMVYIKAT 188

Query: 716  GDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRS 895
             +KSAEMVTDEGAIYVTSNRGYNWKAAVQE+VSATLNRTVSSGISGASYYTGTFNTVNRS
Sbjct: 189  NEKSAEMVTDEGAIYVTSNRGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNTVNRS 248

Query: 896  PEGNYVAVSSRGNFYLTWEPGQPYWQPHNRSVARRIQNMGWRADXXXXXXXXXXXXXXSK 1075
            P+G YVAVSSRGNFY+TWEPGQ YWQPHNR+VARRIQNMGWRAD              SK
Sbjct: 249  PDGRYVAVSSRGNFYMTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGSLFLSK 308

Query: 1076 GTGITEEFNEIPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTKNSGKTWTRDRAADNIA 1255
            GTGITEEF EIPVQSRGFGILDVGYRS DEAWAAGGSG+LL+T N GK+W RD+AADNIA
Sbjct: 309  GTGITEEFEEIPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTNNGGKSWIRDKAADNIA 368

Query: 1256 ANLYSVKFINDKQGFVLGNDGVLLKYLG 1339
            ANLYSVKFI+DK+GFVLGNDGVLL+YLG
Sbjct: 369  ANLYSVKFIDDKKGFVLGNDGVLLRYLG 396


>ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly factor HCF136,
            chloroplastic [Vitis vinifera]
            gi|297737938|emb|CBI27139.3| unnamed protein product
            [Vitis vinifera]
          Length = 404

 Score =  578 bits (1490), Expect = e-162
 Identities = 286/367 (77%), Positives = 315/367 (85%), Gaps = 1/367 (0%)
 Frame = +2

Query: 242  RIAVPKASLNRRQLLXXXXXXXXXXXXISLGSSAFVLPARSEDQL-SEWERVSLPIDPGV 418
            R  + K SL RR LL            + +       PA+SE+ L SEWERV LPIDPGV
Sbjct: 43   RACLQKPSLTRRHLLAETAAISVAPLILGIEP-----PAKSEEPLLSEWERVYLPIDPGV 97

Query: 419  VLLDIAFVPDDPSHGFLLGTRQTLLETKDRGSTWAPRSIPSAEDEDFNYRFNCISFQGKE 598
            VLLDIAFVPDD SHGFLLGTRQT++ETKD G+TW PRSIPSAEDEDFNYRFN ISF+GKE
Sbjct: 98   VLLDIAFVPDDLSHGFLLGTRQTIMETKDGGNTWVPRSIPSAEDEDFNYRFNSISFKGKE 157

Query: 599  GWIVGKPAILLHTSDGGDSWERIPLSAELPGDMVYIKATGDKSAEMVTDEGAIYVTSNRG 778
            GWIVGKP+ILL+TSD G+SWERIPLSA+LPGD+VYIKATG+KSAEMVTDEGAIYVTSNRG
Sbjct: 158  GWIVGKPSILLYTSDAGESWERIPLSAQLPGDIVYIKATGEKSAEMVTDEGAIYVTSNRG 217

Query: 779  YNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPEGNYVAVSSRGNFYLTWEPG 958
            YNW+AAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSP+G+YVAVSSRGNFYLTWEPG
Sbjct: 218  YNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGSYVAVSSRGNFYLTWEPG 277

Query: 959  QPYWQPHNRSVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFNEIPVQSRGFGIL 1138
            QPYWQPHNR+VARRIQNMGWRAD              SKGTGI+E+F EIPVQSRGFGIL
Sbjct: 278  QPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGISEDFEEIPVQSRGFGIL 337

Query: 1139 DVGYRSQDEAWAAGGSGVLLKTKNSGKTWTRDRAADNIAANLYSVKFINDKQGFVLGNDG 1318
            DVGYRS++EAWAAGGSGVLL+T N GKTWTRD+AADNIAANLYSVKFI+D +GFVLGNDG
Sbjct: 338  DVGYRSKEEAWAAGGSGVLLRTTNGGKTWTRDKAADNIAANLYSVKFIDDTKGFVLGNDG 397

Query: 1319 VLLKYLG 1339
            VLL++LG
Sbjct: 398  VLLRFLG 404


>ref|NP_197703.1| photosystem II stability/assembly factor HCF136 [Arabidopsis
            thaliana] gi|6016183|sp|O82660.1|P2SAF_ARATH RecName:
            Full=Photosystem II stability/assembly factor HCF136,
            chloroplastic; Flags: Precursor
            gi|3559807|emb|CAA75723.1| HCF136 protein [Arabidopsis
            thaliana] gi|9759370|dbj|BAB09829.1| photosystem II
            stability/assembly factor HCF136 [Arabidopsis thaliana]
            gi|15010780|gb|AAK74049.1| AT5g23120/MYJ24_11
            [Arabidopsis thaliana] gi|28416529|gb|AAO42795.1|
            At5g23120/MYJ24_11 [Arabidopsis thaliana]
            gi|332005741|gb|AED93124.1| photosystem II
            stability/assembly factor HCF136 [Arabidopsis thaliana]
          Length = 403

 Score =  578 bits (1489), Expect = e-162
 Identities = 278/359 (77%), Positives = 316/359 (88%)
 Frame = +2

Query: 263  SLNRRQLLXXXXXXXXXXXXISLGSSAFVLPARSEDQLSEWERVSLPIDPGVVLLDIAFV 442
            S +RR+LL            +SL  S+ V PAR+++QLSEWERV LPIDPGVVLLDIAFV
Sbjct: 52   SFSRRELLYQSAA-------VSLSLSSIVGPARADEQLSEWERVFLPIDPGVVLLDIAFV 104

Query: 443  PDDPSHGFLLGTRQTLLETKDRGSTWAPRSIPSAEDEDFNYRFNCISFQGKEGWIVGKPA 622
            PD+PS GFLLGTRQTLLETKD GSTW PRSIPSAE+EDFNYRFN ISF+GKEGWI+GKPA
Sbjct: 105  PDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPA 164

Query: 623  ILLHTSDGGDSWERIPLSAELPGDMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQ 802
            ILL+T+D G++W+RIPLS++LPGDMV+IKAT DKSAEMVTDEGAIYVTSNRGYNWKAA+Q
Sbjct: 165  ILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQ 224

Query: 803  ETVSATLNRTVSSGISGASYYTGTFNTVNRSPEGNYVAVSSRGNFYLTWEPGQPYWQPHN 982
            ETVSATLNRTVSSGISGASYYTGTF+ VNRSP+G YVAVSSRGNF+LTWEPGQPYWQPHN
Sbjct: 225  ETVSATLNRTVSSGISGASYYTGTFSAVNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHN 284

Query: 983  RSVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFNEIPVQSRGFGILDVGYRSQD 1162
            R+VARRIQNMGWRAD              SKGTGITEEF E+PVQSRGFGILDVGYRS++
Sbjct: 285  RAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEE 344

Query: 1163 EAWAAGGSGVLLKTKNSGKTWTRDRAADNIAANLYSVKFINDKQGFVLGNDGVLLKYLG 1339
            EAWAAGGSG+LL+T+N GK+W RD+AADNIAANLY+VKF++DK+GFVLGNDGVLL+Y+G
Sbjct: 345  EAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403