BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00006782
         (1279 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002874971.1| pentatricopeptide repeat-containing protein ...    48   3e-07
ref|NP_192066.2| pentatricopeptide repeat-containing protein [Ar...    47   8e-07
gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]                          47   8e-07
ref|XP_002328377.1| predicted protein [Populus trichocarpa] gi|2...    41   1e-06
ref|XP_002309564.1| predicted protein [Populus trichocarpa] gi|2...    48   2e-06

>ref|XP_002874971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297320808|gb|EFH51230.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 802

 Score = 47.8 bits (112), Expect(2) = 3e-07
 Identities = 21/55 (38%), Positives = 35/55 (63%)
 Frame = -3

Query: 191 VFRTMKCNGLIPDSDTYNIIIRGCLRNKKYNEACKLVDKMVDCGFLADTFSTSLL 27
           +F  M+ NG +PD+  YN ++ G L+ +K  EAC+L +KMV  G  A  ++ ++L
Sbjct: 344 IFGEMQYNGFVPDTVVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNIL 398



 Score = 33.9 bits (76), Expect(2) = 3e-07
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 268 GHKPNNVVYRTLLDGLCKNHYVDKAL 191
           GH+P+N  YR L+ G CK++ +D A+
Sbjct: 317 GHEPDNSTYRILIQGCCKSYRMDDAM 342


>ref|NP_192066.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75161629|sp|Q8VZE4.1|PP299_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g01570 gi|18086402|gb|AAL57659.1| AT4g01570/T15B16_21
           [Arabidopsis thaliana] gi|24797024|gb|AAN64524.1|
           At4g01570/T15B16_21 [Arabidopsis thaliana]
           gi|332656643|gb|AEE82043.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 805

 Score = 46.6 bits (109), Expect(2) = 8e-07
 Identities = 20/55 (36%), Positives = 35/55 (63%)
 Frame = -3

Query: 191 VFRTMKCNGLIPDSDTYNIIIRGCLRNKKYNEACKLVDKMVDCGFLADTFSTSLL 27
           ++  M+ NG +PD+  YN ++ G L+ +K  EAC+L +KMV  G  A  ++ ++L
Sbjct: 346 IYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNIL 400



 Score = 33.9 bits (76), Expect(2) = 8e-07
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 268 GHKPNNVVYRTLLDGLCKNHYVDKAL 191
           GH+P+N  YR L+ G CK++ +D A+
Sbjct: 319 GHEPDNSTYRILIQGCCKSYRMDDAM 344


>gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
          Length = 508

 Score = 46.6 bits (109), Expect(2) = 8e-07
 Identities = 20/55 (36%), Positives = 35/55 (63%)
 Frame = -3

Query: 191 VFRTMKCNGLIPDSDTYNIIIRGCLRNKKYNEACKLVDKMVDCGFLADTFSTSLL 27
           ++  M+ NG +PD+  YN ++ G L+ +K  EAC+L +KMV  G  A  ++ ++L
Sbjct: 346 IYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNIL 400



 Score = 33.9 bits (76), Expect(2) = 8e-07
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 268 GHKPNNVVYRTLLDGLCKNHYVDKAL 191
           GH+P+N  YR L+ G CK++ +D A+
Sbjct: 319 GHEPDNSTYRILIQGCCKSYRMDDAM 344


>ref|XP_002328377.1| predicted protein [Populus trichocarpa] gi|222838092|gb|EEE76457.1|
           predicted protein [Populus trichocarpa]
          Length = 688

 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -3

Query: 191 VFRTMKCNGLIPDSDTYNIIIRGCLRNKKYNEACKLVDKMVDCGFLADTFSTSLLQH 21
           +F+ M+ NG  PD  TYNIII    +++  N+A   + +MVD G   D  + + + H
Sbjct: 290 LFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILH 346



 Score = 39.3 bits (90), Expect(2) = 1e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 289 FYKIEDLGHKPNNVVYRTLLDGLCKNHYVDKALSF 185
           F K+E  G KPN V Y T++D LCK+  V+ A+ F
Sbjct: 221 FKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDF 255


>ref|XP_002309564.1| predicted protein [Populus trichocarpa] gi|222855540|gb|EEE93087.1|
           predicted protein [Populus trichocarpa]
          Length = 593

 Score = 47.8 bits (112), Expect(2) = 2e-06
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = -3

Query: 188 FRTMKCNGLIPDSDTYNIIIRGCLRNKKYNEACKLVDKMVDCGFLADTFSTS 33
           FR M+ +G  PD  +YN+IIRG L +K  + A +L+ +M D GF+AD  +T+
Sbjct: 541 FRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGTTA 592



 Score = 31.2 bits (69), Expect(2) = 2e-06
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 268 GHKPNNVVYRTLLDGLCKNHYVDKAL 191
           G +PN  +Y T+++GLCK   +D+AL
Sbjct: 513 GLQPNAQIYTTIINGLCKEGLLDEAL 538