BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00006518
         (558 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]                221   8e-56
ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arab...   220   1e-55
ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabi...   220   1e-55
gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]          219   2e-55
ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated p...   218   7e-55

>dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
          Length = 254

 Score =  221 bits (562), Expect = 8e-56
 Identities = 108/145 (74%), Positives = 121/145 (83%)
 Frame = -2

Query: 443 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPLKGSKKSDEPREDRRT 264
           LQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLV+GDCEEFRKLPP KG+KK++E RE+RRT
Sbjct: 10  LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRT 69

Query: 263 LGLVLLRGEEVISMTVEGPPPPDESXXXXXXXANLSXXXXXXXXXXXXPTAPLVQAQPGL 84
           LGLVLLRGEEVISMTVEGPPPP+ES         ++            PT PLVQAQPGL
Sbjct: 70  LGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLVQAQPGL 129

Query: 83  AGPVRGIGGPAPGMMQPQISRPPML 9
           +GPVRGIGGPAPGMMQPQISRPP++
Sbjct: 130 SGPVRGIGGPAPGMMQPQISRPPLI 154


>ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
           lyrata] gi|297311196|gb|EFH41620.1| hypothetical protein
           ARALYDRAFT_494537 [Arabidopsis lyrata subsp. lyrata]
          Length = 256

 Score =  220 bits (561), Expect = 1e-55
 Identities = 109/145 (75%), Positives = 119/145 (82%)
 Frame = -2

Query: 443 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPLKGSKKSDEPREDRRT 264
           LQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLV+GDCEEFRKLPP KGSKK+ E RE+RRT
Sbjct: 10  LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKKTKEDREERRT 69

Query: 263 LGLVLLRGEEVISMTVEGPPPPDESXXXXXXXANLSXXXXXXXXXXXXPTAPLVQAQPGL 84
           LGLVLLRGEEVISMTVEGPPPP+ES         ++            PT PLVQAQPGL
Sbjct: 70  LGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLVQAQPGL 129

Query: 83  AGPVRGIGGPAPGMMQPQISRPPML 9
           +GPVRGIGGPAPGMMQPQISRPP +
Sbjct: 130 SGPVRGIGGPAPGMMQPQISRPPQI 154


>ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
           gi|79329893|ref|NP_001032011.1| small nuclear
           ribonucleoprotein B and B' [Arabidopsis thaliana]
           gi|9758703|dbj|BAB09157.1| unnamed protein product
           [Arabidopsis thaliana] gi|14596137|gb|AAK68796.1|
           Unknown protein [Arabidopsis thaliana]
           gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis
           thaliana] gi|51971895|dbj|BAD44612.1| unknown protein
           [Arabidopsis thaliana] gi|62320496|dbj|BAD95039.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332007733|gb|AED95116.1| small nuclear
           ribonucleoprotein B and B' [Arabidopsis thaliana]
           gi|332007734|gb|AED95117.1| small nuclear
           ribonucleoprotein B and B' [Arabidopsis thaliana]
          Length = 254

 Score =  220 bits (560), Expect = 1e-55
 Identities = 108/145 (74%), Positives = 120/145 (82%)
 Frame = -2

Query: 443 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPLKGSKKSDEPREDRRT 264
           LQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLV+GDCEEFRKLPP KG+KK++E RE+RRT
Sbjct: 10  LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRT 69

Query: 263 LGLVLLRGEEVISMTVEGPPPPDESXXXXXXXANLSXXXXXXXXXXXXPTAPLVQAQPGL 84
           LGLVLLRGEEVISMTVEGPPPP+ES         ++            PT PLVQAQPGL
Sbjct: 70  LGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLVQAQPGL 129

Query: 83  AGPVRGIGGPAPGMMQPQISRPPML 9
           +GPVRGIGGPAPGMMQPQISRPP +
Sbjct: 130 SGPVRGIGGPAPGMMQPQISRPPQI 154


>gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
          Length = 254

 Score =  219 bits (559), Expect = 2e-55
 Identities = 108/145 (74%), Positives = 119/145 (82%)
 Frame = -2

Query: 443 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPLKGSKKSDEPREDRRT 264
           LQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLV+GDCEEFRKLPP KG+KK+ E RE+RRT
Sbjct: 10  LQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTSEEREERRT 69

Query: 263 LGLVLLRGEEVISMTVEGPPPPDESXXXXXXXANLSXXXXXXXXXXXXPTAPLVQAQPGL 84
           LGLVLLRGEEVISMTVEGPPPP+ES         ++            PT PLVQAQPGL
Sbjct: 70  LGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTGPLVQAQPGL 129

Query: 83  AGPVRGIGGPAPGMMQPQISRPPML 9
           +GPVRGIGGPAPGMMQPQISRPP +
Sbjct: 130 SGPVRGIGGPAPGMMQPQISRPPQI 154


>ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
           truncatula] gi|355518812|gb|AET00436.1| Small nuclear
           ribonucleoprotein-associated protein B [Medicago
           truncatula]
          Length = 394

 Score =  218 bits (554), Expect = 7e-55
 Identities = 109/147 (74%), Positives = 118/147 (80%)
 Frame = -2

Query: 443 LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVIGDCEEFRKLPPLKGSKKSDEPREDRRT 264
           LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLV+GDCEEFRKLPP KG K +D  REDRRT
Sbjct: 10  LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTTDGDREDRRT 69

Query: 263 LGLVLLRGEEVISMTVEGPPPPDESXXXXXXXANLSXXXXXXXXXXXXPTAPLVQAQPGL 84
           LGLVLLRGEEVISM VEGPPPP+ES       A ++            P AP++QAQPGL
Sbjct: 70  LGLVLLRGEEVISMAVEGPPPPEESRSKAVNAAAMAGPGIGRAAGRGIPPAPVIQAQPGL 129

Query: 83  AGPVRGIGGPAPGMMQPQISRPPMLNP 3
           AGPVRG+GGPAPGMMQPQISRPP+  P
Sbjct: 130 AGPVRGVGGPAPGMMQPQISRPPVSYP 156