BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00006007
         (1066 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   276   6e-72
emb|CBI35920.3| unnamed protein product [Vitis vinifera]              272   1e-70
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221...   234   3e-59
ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|2...   226   1e-56
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...   223   6e-56

>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
           vinifera]
          Length = 421

 Score =  276 bits (706), Expect = 6e-72
 Identities = 140/260 (53%), Positives = 192/260 (73%), Gaps = 6/260 (2%)
 Frame = -2

Query: 864 LDVKIQTVHTDPDKISPLVGYFSSSFNPFKDSKYSSE----VNVYQNVKRSNRFEMVVKP 697
           ++VK++ VH  P+KI PLVGYF S F+P K   + S+    V V++N  R+NR ++VV P
Sbjct: 27  VNVKMEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSP 86

Query: 696 NGSEVNFVGTNYSGEAAAPQLCTYALGVLDKDTQTLKIVPITSNKIFRLEPNFGGSDASQ 517
           N S+VNFVGT+YSGEAA+ Q+CTYALGVLDK+TQTLKIVPI SNKIFRLEP  GGSDAS 
Sbjct: 87  NDSKVNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASV 146

Query: 516 DEAQQIPKDEVNREERAQKLRLLDKMFSTKKTNTRNKKLDSLRQKQDPSAKQDLDKSLED 337
           DE   + K E   EE+A ++R L  ++ TKK+ T+ KKL +L QK DP +++DLD+ L++
Sbjct: 147 DEPSSLLKGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKE 206

Query: 336 VKVNTEALDAGTT-NARNIPFHDMSASAPEKVYPLEKIIEKGEWDYLGDLLNITH-GAEV 163
           V +N EAL++ +  +ARNIP +D +A+ P++ Y L+KII KGEWDYL D+L++   G EV
Sbjct: 207 VVINKEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEV 266

Query: 162 TPDAYPIFVCNRVHRLKDIK 103
              AY  FVCNR+ +LK+++
Sbjct: 267 ESSAYSSFVCNRIQKLKELE 286


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  272 bits (695), Expect = 1e-70
 Identities = 138/256 (53%), Positives = 188/256 (73%), Gaps = 6/256 (2%)
 Frame = -2

Query: 852 IQTVHTDPDKISPLVGYFSSSFNPFKDSKYSSE----VNVYQNVKRSNRFEMVVKPNGSE 685
           ++ VH  P+KI PLVGYF S F+P K   + S+    V V++N  R+NR ++VV PN S+
Sbjct: 1   MEVVHEHPEKIPPLVGYFPSGFDPHKPQDHESDPPPAVKVFRNKARANRLQLVVSPNDSK 60

Query: 684 VNFVGTNYSGEAAAPQLCTYALGVLDKDTQTLKIVPITSNKIFRLEPNFGGSDASQDEAQ 505
           VNFVGT+YSGEAA+ Q+CTYALGVLDK+TQTLKIVPI SNKIFRLEP  GGSDAS DE  
Sbjct: 61  VNFVGTSYSGEAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEPS 120

Query: 504 QIPKDEVNREERAQKLRLLDKMFSTKKTNTRNKKLDSLRQKQDPSAKQDLDKSLEDVKVN 325
            + K E   EE+A ++R L  ++ TKK+ T+ KKL +L QK DP +++DLD+ L++V +N
Sbjct: 121 SLLKGEQTAEEKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKDLDRKLKEVVIN 180

Query: 324 TEALDAGTT-NARNIPFHDMSASAPEKVYPLEKIIEKGEWDYLGDLLNITH-GAEVTPDA 151
            EAL++ +  +ARNIP +D +A+ P++ Y L+KII KGEWDYL D+L++   G EV   A
Sbjct: 181 KEALESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDILDLLQAGVEVESSA 240

Query: 150 YPIFVCNRVHRLKDIK 103
           Y  FVCNR+ +LK+++
Sbjct: 241 YSSFVCNRIQKLKELE 256


>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
           gi|449480549|ref|XP_004155927.1| PREDICTED:
           uncharacterized protein LOC101224839 [Cucumis sativus]
          Length = 435

 Score =  234 bits (597), Expect = 3e-59
 Identities = 123/261 (47%), Positives = 175/261 (67%), Gaps = 7/261 (2%)
 Frame = -2

Query: 864 LDVKIQTVHTDPDKISPLVGYFSSSFNPFKDS----KYSSEVNVYQNVKRSNRFEMVVKP 697
           +D KIQ +   P K  P+VGYF S F+P KD+      S    VY++  R NR ++VV P
Sbjct: 41  MDAKIQVLSNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSP 100

Query: 696 NGSEVNFVGTNYSGEAAA-PQLCTYALGVLDKDTQTLKIVPITSNKIFRLEPNFGGSDAS 520
            GS V+FVGTNY GEA A  Q CTYALGVLDK TQ+LKIVPI SN IFRL+P   GSD +
Sbjct: 101 TGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVT 160

Query: 519 QDEAQQIPKDEVNREERAQKLRLLDKMFSTKKTNTRNKKLDSLRQKQDPSAKQDLDKSLE 340
           ++E+  +  +E++ +++A ++R L  ++ TKK+  + +KL +L+Q+ DP  K DLD  ++
Sbjct: 161 ENESPSVANEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMK 220

Query: 339 DVKVNTEALDAGTTN-ARNIPFHDMSASAPEKVYPLEKIIEKGEWDYLGDL-LNITHGAE 166
           +V VN EAL+      ARNIP ++ SA+ P++ YPL+KII KGEW +L DL   +   AE
Sbjct: 221 NVVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAE 280

Query: 165 VTPDAYPIFVCNRVHRLKDIK 103
           ++   YP FV NR+++L+DI+
Sbjct: 281 ISA-TYPSFVRNRIYKLQDIQ 300


>ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|222839699|gb|EEE78022.1|
           predicted protein [Populus trichocarpa]
          Length = 472

 Score =  226 bits (575), Expect = 1e-56
 Identities = 122/284 (42%), Positives = 173/284 (60%), Gaps = 30/284 (10%)
 Frame = -2

Query: 864 LDVKIQTVHTDPDKISPLVGYFSSSFNPFKDSKYSS------------EVNVYQNVKR-- 727
           LDVK++ V+   DK  P+VGYF S +NP K +  +              V +Y+N +R  
Sbjct: 54  LDVKLELVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAPPSVKLYRNAQRAK 113

Query: 726 --------------SNRFEMVVKPNGSEVNFVGTNYSGEAAAPQLCTYALGVLDKDTQTL 589
                         S R E+VV PNGS V FVG +Y GEA A QLCTYALGVLDK TQTL
Sbjct: 114 VEKSSGEKNEKGRTSERLELVVSPNGSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTL 173

Query: 588 KIVPITSNKIFRLEPNFGGSDASQDEAQQIPKDEVNREERAQKLRLLDKMFSTKKTNTRN 409
           KI+PI  NKI RLEP   GS A+  E       E+  E+RA ++R L+  +  KK+  ++
Sbjct: 174 KIMPIAGNKILRLEPKLRGSLAADKEHANFENGEITAEQRAARIRQLNVQYGPKKSIIQD 233

Query: 408 KKLDSLRQKQDPSAKQDLDKSLEDVKVNTEALDAGT-TNARNIPFHDMSASAPEKVYPLE 232
           KK+ +LR+  DP +++DL + +E+  +N +AL++ +  +ARNIP ++ SA  P++ YPL+
Sbjct: 234 KKMQALRKGDDPLSQKDLGRKIENAPINKDALESTSGHSARNIPPYNSSAITPQEAYPLD 293

Query: 231 KIIEKGEWDYLGDLLNITH-GAEVTPDAYPIFVCNRVHRLKDIK 103
            II  GEWD+L D+  I   G EV  +AYP FVCNR+ +L++I+
Sbjct: 294 GIILTGEWDFLEDIYKILQVGGEVASNAYPTFVCNRIQKLREIQ 337


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
           communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
           polymerase I 49 kDa polypeptide, putative [Ricinus
           communis]
          Length = 481

 Score =  223 bits (568), Expect = 6e-56
 Identities = 121/289 (41%), Positives = 173/289 (59%), Gaps = 35/289 (12%)
 Frame = -2

Query: 864 LDVKIQTVHTDPDKISPLVGYFSSSFNPFKDSKYSS-----------------EVNVYQN 736
           L+VKI+ ++   DK  P+VGYF S + P K ++ ++                  V  Y+N
Sbjct: 58  LNVKIEVIYDQTDKTPPIVGYFPSGYKPSKHNESNNLHDTSNEENATSSLSQPSVKFYRN 117

Query: 735 VKR----------------SNRFEMVVKPNGSEVNFVGTNYSGEAAAPQLCTYALGVLDK 604
            +R                S R E+VV PNGS V+FVG +Y GEA A QLCTYALGVLDK
Sbjct: 118 AQRTKIEKSSNERNEKWRSSERMELVVSPNGSNVDFVGKSYKGEATAAQLCTYALGVLDK 177

Query: 603 DTQTLKIVPITSNKIFRLEPNFGGSDASQDEAQQIPKDEVNREERAQKLRLLDKMFSTKK 424
            T+TLKI+PI  NKIFRLEP   G DAS  E   +  +++++E  A + + L   + TKK
Sbjct: 178 KTKTLKIMPIAGNKIFRLEPKIQGVDASDKEPSVLENEDLSKENMAVRKKTLTDTYGTKK 237

Query: 423 TNTRNKKLDSLRQKQDPSAKQDLDKSLEDVKVNTEAL-DAGTTNARNIPFHDMSASAPEK 247
           + T+ K+++ + Q  +P +++DLD+ +++V VN  AL D     ARNIP H+ SA+ P++
Sbjct: 238 SITQGKRMEIMMQGDNPESRKDLDQKIDNVVVNKAALEDTSAHVARNIPPHNTSATTPQE 297

Query: 246 VYPLEKIIEKGEWDYLGDLLNITHGAE-VTPDAYPIFVCNRVHRLKDIK 103
            YPL +II  GEWDYL DL  I    E    +AYP+FV NR+H+L++I+
Sbjct: 298 AYPLGRIILTGEWDYLEDLYEILQAGEGAAINAYPVFVRNRIHKLREIQ 346