BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00005980
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE02852.1| OSJNBa0014F04.18 [Oryza sativa Japonica Group]         98   6e-19
gb|AAL35396.1| Opie2a pol [Zea mays] gi|168251075|gb|ACA21858.1|...    97   2e-18
gb|ABF67947.1| Opie2 pol protein [Zea mays]                            96   4e-18
gb|AAC49502.1| Pol [Zea mays]                                          96   4e-18
gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa...    95   5e-18

>emb|CAE02852.1| OSJNBa0014F04.18 [Oryza sativa Japonica Group]
          Length = 958

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 45/90 (50%), Positives = 62/90 (68%)
 Frame = +1

Query: 109 DLFGPVNIMSISKKIYALVIVDDFTRFTWVFFIHKKDETPQQIVELIKVIVNNSRHKVKV 288
           DLF P+  +SI    Y LVIVDDF+RFTWVFF+H K ET     +  +++ N    K+K+
Sbjct: 13  DLFRPIAYLSIGGNKYGLVIVDDFSRFTWVFFLHDKSETQAIFKKFARIVQNEFDLKIKI 72

Query: 289 LRSDNGTEFKNSIMENFCVDKGITQQFSAP 378
           +RSDNG EFKN+ +E+F  ++GI  +FSAP
Sbjct: 73  IRSDNGKEFKNTCIESFLDEEGIKHEFSAP 102


>gb|AAL35396.1| Opie2a pol [Zea mays] gi|168251075|gb|ACA21858.1| Opie2a pol
           protein [Zea mays]
          Length = 1048

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 48/90 (53%), Positives = 60/90 (66%)
 Frame = +1

Query: 109 DLFGPVNIMSISKKIYALVIVDDFTRFTWVFFIHKKDETPQQIVELIKVIVNNSRHKVKV 288
           DLFGPV  +SI    Y LVIVDDF+RFTWVFF+  K ET   +   ++   N    KVK 
Sbjct: 190 DLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRYLRRAQNEFELKVKK 249

Query: 289 LRSDNGTEFKNSIMENFCVDKGITQQFSAP 378
           +RSDNG+EFKN  +E F V++GI  +FSAP
Sbjct: 250 IRSDNGSEFKNLQVEEFLVEEGIKHEFSAP 279


>gb|ABF67947.1| Opie2 pol protein [Zea mays]
          Length = 1048

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 47/90 (52%), Positives = 60/90 (66%)
 Frame = +1

Query: 109 DLFGPVNIMSISKKIYALVIVDDFTRFTWVFFIHKKDETPQQIVELIKVIVNNSRHKVKV 288
           DLFGPV  +SI    Y LVIVDDF+RFTWVFF+ +K ET   +   ++   N    KVK 
Sbjct: 190 DLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQEKSETQGTLKRFLRRAQNEFELKVKK 249

Query: 289 LRSDNGTEFKNSIMENFCVDKGITQQFSAP 378
           +RSDNG+EFKN  +E F  ++GI  +FSAP
Sbjct: 250 IRSDNGSEFKNLQVEEFLEEEGIKHEFSAP 279


>gb|AAC49502.1| Pol [Zea mays]
          Length = 1068

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 47/90 (52%), Positives = 60/90 (66%)
 Frame = +1

Query: 109 DLFGPVNIMSISKKIYALVIVDDFTRFTWVFFIHKKDETPQQIVELIKVIVNNSRHKVKV 288
           DLFGPV  +SI    Y LVIVDDF+RFTWVFF+ +K ET   +   ++   N    KVK 
Sbjct: 210 DLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQEKSETQGTLKRFLRRAQNEFELKVKK 269

Query: 289 LRSDNGTEFKNSIMENFCVDKGITQQFSAP 378
           +RSDNG+EFKN  +E F  ++GI  +FSAP
Sbjct: 270 IRSDNGSEFKNLQVEEFLEEEGIKHEFSAP 299


>gb|AAO66559.1| putative copia-type pol polyprotein [Oryza sativa Japonica Group]
            gi|108709148|gb|ABF96943.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 2027

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 46/90 (51%), Positives = 60/90 (66%)
 Frame = +1

Query: 109  DLFGPVNIMSISKKIYALVIVDDFTRFTWVFFIHKKDETPQQIVELIKVIVNNSRHKVKV 288
            DLFGP+  +SI    Y LVIVDDF+RFTWVFF+H K ET     +  +   N    K+K 
Sbjct: 886  DLFGPIAYLSIGGNKYGLVIVDDFSRFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKN 945

Query: 289  LRSDNGTEFKNSIMENFCVDKGITQQFSAP 378
            +RSDNG EFKN+ +E+F  ++GI  +FSAP
Sbjct: 946  IRSDNGKEFKNTCIESFLDEEGIKHEFSAP 975