BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00005744
         (1373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containi...   388   e-105
ref|XP_002524769.1| pentatricopeptide repeat-containing protein,...   365   1e-98
ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containi...   324   3e-86
ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containi...   324   4e-86
ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containi...   321   2e-85

>ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
            [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed
            protein product [Vitis vinifera]
          Length = 494

 Score =  388 bits (997), Expect = e-105
 Identities = 206/386 (53%), Positives = 269/386 (69%), Gaps = 1/386 (0%)
 Frame = -1

Query: 1157 MKRVWKLSESAQSELITLRTFITKPQNILSQTPYLTRTNPITTSTNRFSLKDSFYSPPNL 978
            MKRVWK      S LI      TKP+ +      L R     T             P  L
Sbjct: 1    MKRVWK------SGLIC-----TKPKILTPDFQNLARVTHTRTPLQ---------GPYTL 40

Query: 977  NSIPFPNIIGLFSDRLSHHEMQAKEDLIHKASVLRNELIRVDDCRQDLIFKVLDEKGSSW 798
             S+     IGLFSD+ S  +++A+E+L  K S LR+EL+   D   D++ +VL+EKG S 
Sbjct: 41   TSM-----IGLFSDKHSELDLRAREELRGKVSQLRDELVPSGD-DSDMVVRVLEEKGESL 94

Query: 797  FKCYDDGAAFVELLRQLEFLPRCALQVFDWRRKQSVNGFPMTAEEYAKGIRLVGRSKNID 618
            F+ Y +G+AFVELL+QL   P  ALQVF+WRR Q+    PMT+EEYAKGI + GR+KN+D
Sbjct: 95   FRSYSNGSAFVELLKQLSSWPYLALQVFNWRRNQTDYSIPMTSEEYAKGISVAGRTKNVD 154

Query: 617  LATELFTEAANRRIKTASTYNALLGAYMYNDCTDKCQLLYGDFKKDISCKPTVVTYNILI 438
            LA ELFTEAAN++IKT STYNAL+GAYM N   +KCQ L+ D K++ SC PT+VTYNILI
Sbjct: 155  LAVELFTEAANKQIKTTSTYNALMGAYMCNGHAEKCQALFRDLKREASCSPTIVTYNILI 214

Query: 437  SVFGRLMLIKHMEAALQEMKNSNIMPNLNTYNMLLGGYVTAWMWDTMEKTYKVMEASGIR 258
            SVFGRLML+ HMEA  +E+K   + PN++TYN ++ GYVTAWMW+ ME T++ M+   I+
Sbjct: 215  SVFGRLMLVDHMEATFREIKELELSPNISTYNNIIAGYVTAWMWNRMEDTFRTMKEDNIQ 274

Query: 257  PDIHTHLLLLRGYAHSGNLKKMEEIYKLVNYHVIEHKEFPLIRAMICAYCNSTSSDRVQK 78
            PDI+THLL+LRGYAHSGNL+KMEE Y+L+  HV   KE PLIRAMICAYC S+ +DRV+K
Sbjct: 275  PDINTHLLMLRGYAHSGNLQKMEETYELIKGHV-NDKEIPLIRAMICAYCKSSITDRVEK 333

Query: 77   VEELLRLIPKHD-KSWLTVMLIKLYA 3
            +  L++LIP+++ + WL VMLI++YA
Sbjct: 334  IGALMKLIPENEYRPWLNVMLIRVYA 359


>ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535953|gb|EEF37612.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 509

 Score =  365 bits (938), Expect = 1e-98
 Identities = 204/387 (52%), Positives = 268/387 (69%), Gaps = 2/387 (0%)
 Frame = -1

Query: 1157 MKRVWKLSESA-QSELITLRTFITKPQNILSQTPYLTRTNPITTSTNRFSLKDSFYSPPN 981
            MKRV K+S+ A Q+EL++L  F +  Q +   TPY+       T +  + L  +  S P 
Sbjct: 1    MKRVSKISDLAVQAELLSLNKFPSITQTL---TPYILTL----TKSPIYKLARAHTSEPV 53

Query: 980  LNSIPFPNIIGLFSDRLSHHEMQAKEDLIHKASVLRNELIRVDDCRQDLIFKVLDEKGSS 801
                 FPNII LFS R    + +A EDL    S LR+EL++  +   D  F+VL+E+G S
Sbjct: 54   SF---FPNIISLFSRRFPV-DNKAIEDLSKTVSHLRDELVQHAE-DSDKFFRVLEEQGDS 108

Query: 800  WFKCYDDGAAFVELLRQLEFLPRCALQVFDWRRKQSVNGFPMTAEEYAKGIRLVGRSKNI 621
             F+   D +A VELLRQL  LP  A++VF+WRRKQ+    PMT EEYAKGI + GR+KN+
Sbjct: 109  LFRMRSDRSALVELLRQLVSLPHLAVEVFNWRRKQTEWSTPMTHEEYAKGITIAGRAKNV 168

Query: 620  DLATELFTEAANRRIKTASTYNALLGAYMYNDCTDKCQLLYGDFKKDISCKPTVVTYNIL 441
            DLA E+F EA ++R K    YNAL+GAYMYN   DKCQ L+ DFKK+ +  P+VVTYNIL
Sbjct: 169  DLAIEIFAEACSKRRKKTCIYNALMGAYMYNGHYDKCQSLFLDFKKEANIGPSVVTYNIL 228

Query: 440  ISVFGRLMLIKHMEAALQEMKNSNIMPNLNTYNMLLGGYVTAWMWDTMEKTYKVMEASGI 261
            ISVFGR ML+ HMEA  +E+ N NI PN++TYN L+ GYVTAWMWD ME+ +++M+   I
Sbjct: 229  ISVFGRSMLVDHMEATFRELMNLNISPNVSTYNNLIAGYVTAWMWDDMEQVFQLMKEGPI 288

Query: 260  RPDIHTHLLLLRGYAHSGNLKKMEEIYKLVNYHVIEHKEFPLIRAMICAYCNSTSSDRVQ 81
             P + T+LL+LRGYAHSGN++KMEE+YKLV  HV    E PLIR MICAYC S+ +DR++
Sbjct: 289  YPHLDTYLLMLRGYAHSGNIEKMEEMYKLVQDHV-NVNEVPLIRTMICAYCKSSITDRIK 347

Query: 80   KVEELLRLIPKHD-KSWLTVMLIKLYA 3
            K+EELLRLIP+ + + WL V+LIK+YA
Sbjct: 348  KIEELLRLIPEEEYRPWLNVLLIKVYA 374


>ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like
            [Cucumis sativus] gi|449494249|ref|XP_004159492.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At2g30780-like [Cucumis sativus]
          Length = 514

 Score =  324 bits (831), Expect = 3e-86
 Identities = 176/387 (45%), Positives = 248/387 (64%), Gaps = 2/387 (0%)
 Frame = -1

Query: 1157 MKRVWKLSESAQSELITLRTFITKPQNILSQTPYLTRTNPITTSTNRFSLKDSFYSPPNL 978
            MK++W  S      L+  R         L+ T Y    + + T +     + S   PP++
Sbjct: 1    MKQLWMFS--VPRRLLVSRNIFASFAFSLTNTNYCFLPHGLHTQS-----RSSSSPPPSI 53

Query: 977  NSIPF-PNIIGLFSDRLSHHEMQAKEDLIHKASVLRNELIRVDDCRQDLIFKVLDEKGSS 801
            +S     N+I LFS++   HE+ A   +  K   + +ELI ++    + I K+L++    
Sbjct: 54   SSFSLVANLIELFSNKPDDHEILAICIMERKVLEVSHELI-LNSEDSNKIVKILEDSKDL 112

Query: 800  WFKCYDDGAAFVELLRQLEFLPRCALQVFDWRRKQSVNGFPMTAEEYAKGIRLVGRSKNI 621
                + DG+AFVELL+QL   P  AL+VF+WRR+Q    FP+T EEYAKGI + G+SK+I
Sbjct: 113  LLWKHTDGSAFVELLKQLGSQPNLALEVFNWRRRQG-GSFPLTVEEYAKGIAVAGKSKHI 171

Query: 620  DLATELFTEAANRRIKTASTYNALLGAYMYNDCTDKCQLLYGDFKKDISCKPTVVTYNIL 441
            DLA  LF EA+N+R+K  STYNAL+G +M+N   DKC  ++ D K+D  C P +VTYNIL
Sbjct: 172  DLAVGLFNEASNKRVKATSTYNALMGVFMFNGLADKCNSVFRDLKRDAGCVPNIVTYNIL 231

Query: 440  ISVFGRLMLIKHMEAALQEMKNSNIMPNLNTYNMLLGGYVTAWMWDTMEKTYKVMEASGI 261
            ISVFGRLML+ HMEA ++E+ N N+ PN+NTYN L+ GY+TAWMW  ME+ +  M+AS I
Sbjct: 232  ISVFGRLMLVDHMEATMREIHNLNLSPNVNTYNSLIAGYITAWMWKRMEQAFMKMKASSI 291

Query: 260  RPDIHTHLLLLRGYAHSGNLKKMEEIYKLVNYHVIEHKEFPLIRAMICAYCNSTSSDRVQ 81
             P+  T LL+LRGYAHS NL+KMEE++  +  HV     FPLIRAMI AY  S+ +D+V 
Sbjct: 292  TPNTETFLLMLRGYAHSDNLEKMEEMHHFLKDHV-NKNNFPLIRAMIYAYSRSSITDKVH 350

Query: 80   KVEELLRLIPKHD-KSWLTVMLIKLYA 3
            K++ LL+LIP+ + + WL V LI++YA
Sbjct: 351  KIDALLKLIPEEEYRPWLNVKLIRVYA 377


>ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g30780-like [Glycine max]
          Length = 442

 Score =  324 bits (830), Expect = 4e-86
 Identities = 158/301 (52%), Positives = 218/301 (72%), Gaps = 1/301 (0%)
 Frame = -1

Query: 902 DLIHKASVLRNELIRVDDCRQDLIFKVLDEKGSSWFKCYDDGAAFVELLRQLEFLPRCAL 723
           DLI+K ++L+NELIR D C    +  +LD+   + F+ + +G+A ++L+ QL   P  AL
Sbjct: 10  DLINKVTILKNELIR-DSCDSARVQTILDDSFDTLFRRHPNGSALLKLMNQLNSNPSLAL 68

Query: 722 QVFDWRRKQSVNGFPMTAEEYAKGIRLVGRSKNIDLATELFTEAANRRIKTASTYNALLG 543
           QVF WRRK+S    PM A EY+KGI+  GRS N+DLA +LF EAA + IKT  TYNAL+G
Sbjct: 69  QVFSWRRKRSNAENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTGTYNALMG 128

Query: 542 AYMYNDCTDKCQLLYGDFKKDISCKPTVVTYNILISVFGRLMLIKHMEAALQEMKNSNIM 363
           A+M+N   D CQ L+ D K+D++C P++ TYNIL+SV+GRLML+ HMEA   E++  N+ 
Sbjct: 129 AFMFNGLPDNCQSLFCDLKRDLTCDPSIATYNILLSVYGRLMLVDHMEATFSEIQRLNLA 188

Query: 362 PNLNTYNMLLGGYVTAWMWDTMEKTYKVMEASGIRPDIHTHLLLLRGYAHSGNLKKMEEI 183
            N+ TYN L+ GY+TAWMWD MEK +++++ S + P++ THLL+LRGYA+SGNL+KMEE+
Sbjct: 189 MNICTYNHLIAGYITAWMWDDMEKVFQMLKLSSVEPNMKTHLLMLRGYANSGNLEKMEEM 248

Query: 182 YKLVNYHVIEHKEFPLIRAMICAYCNSTSSDRVQKVEELLRLIP-KHDKSWLTVMLIKLY 6
           Y  +  HV   KE  LIR MICAYC S+ +DR++K+E LL+ IP K  + WL V+LIKLY
Sbjct: 249 YSFIRDHV-NIKEISLIRCMICAYCRSSHADRLKKIELLLKFIPQKEYRPWLNVLLIKLY 307

Query: 5   A 3
           A
Sbjct: 308 A 308


>ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like
            [Glycine max]
          Length = 504

 Score =  321 bits (823), Expect = 2e-85
 Identities = 180/389 (46%), Positives = 248/389 (63%), Gaps = 4/389 (1%)
 Frame = -1

Query: 1157 MKRVWKLSESAQSELITLRTFITKPQNILSQTPYLTR-TNPITTSTNRFSLKDSFYSPPN 981
            M+RVW+ S  A      L         +L Q+ Y    +NP TT     SL  +     N
Sbjct: 1    MRRVWRFSSDATRRAQLL---------LLLQSHYFHGFSNPKTTP----SLATALSHHRN 47

Query: 980  LNSIP--FPNIIGLFSDRLSHHEMQAKEDLIHKASVLRNELIRVDDCRQDLIFKVLDEKG 807
            LNS+P    ++I LF+ +       AKEDLI+KAS+L+NELIR +      +  +LD+  
Sbjct: 48   LNSVPNACSDLIPLFTAKSCS---SAKEDLINKASILKNELIR-ESSDSARVLSILDDNS 103

Query: 806  SSWFKCYDDGAAFVELLRQLEFLPRCALQVFDWRRKQSVNGFPMTAEEYAKGIRLVGRSK 627
             +  + + DG+  + L+ QL   P  ALQVF WRRK+S    PM A EY+KGI+  GRS 
Sbjct: 104  DTLIQRHPDGSVLLRLMNQLNSNPSLALQVFSWRRKRSNVENPMDAYEYSKGIKAAGRSG 163

Query: 626  NIDLATELFTEAANRRIKTASTYNALLGAYMYNDCTDKCQLLYGDFKKDISCKPTVVTYN 447
            N+DLA +LF EAA + IKT STYNAL+GA M N   D CQ L+ D K+D +C P++ TYN
Sbjct: 164  NVDLAVKLFKEAAVKGIKTTSTYNALMGACMSNGLADNCQSLFCDLKRDPTCDPSIATYN 223

Query: 446  ILISVFGRLMLIKHMEAALQEMKNSNIMPNLNTYNMLLGGYVTAWMWDTMEKTYKVMEAS 267
            IL+SVFGRLML+ HMEA  +E++      N+ TYN ++ GY+TAWMWD ME  +++++ S
Sbjct: 224  ILLSVFGRLMLVDHMEATFREIQKLTFTMNICTYNHMIAGYITAWMWDDMENVFQMLKRS 283

Query: 266  GIRPDIHTHLLLLRGYAHSGNLKKMEEIYKLVNYHVIEHKEFPLIRAMICAYCNSTSSDR 87
             + P++ T++L+LRGYA+SGNL+KMEEIY  +   V + KE  LIR MICAY  S+ +DR
Sbjct: 284  PVEPNMKTYMLMLRGYANSGNLEKMEEIYSFITDRV-DIKEISLIRCMICAYSRSSDADR 342

Query: 86   VQKVEELLRLIP-KHDKSWLTVMLIKLYA 3
            ++K+E LL+ IP K  + WL V+LIKLYA
Sbjct: 343  LKKIELLLKFIPGKEYRPWLNVLLIKLYA 371