BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00005548
         (1256 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20115.3| unnamed protein product [Vitis vinifera]              345   1e-92
ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g...   343   5e-92
ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro...   343   5e-92
ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana...   343   5e-92
gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides]      325   2e-86

>emb|CBI20115.3| unnamed protein product [Vitis vinifera]
          Length = 374

 Score =  345 bits (885), Expect = 1e-92
 Identities = 174/240 (72%), Positives = 201/240 (83%), Gaps = 2/240 (0%)
 Frame = -3

Query: 1167 TMAMTCYSTWGVLPS-NPSSK-TYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRST 994
            TMA+T  S+  +LPS +PS K ++ + +K TPFLGFS++A   KP+F         ++S 
Sbjct: 139  TMAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSF--------PRQSF 190

Query: 993  QIRCQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDAT 814
            ++ CQD        A++P +Q+WMF+ ++  GPDIWN TWYPKA+DHINTEKTWYIVDAT
Sbjct: 191  RVNCQD------KAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDAT 244

Query: 813  DKILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRP 634
            DKILGRLASTIAI+IRGKNLATYTPSVDMG+FVIVVNAEKVAVSGKKR QKLYRRHSGRP
Sbjct: 245  DKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 304

Query: 633  GGMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454
            GGMKVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQKP+DLP
Sbjct: 305  GGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLP 364


>ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata]
            gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 242

 Score =  343 bits (880), Expect = 5e-92
 Identities = 174/239 (72%), Positives = 197/239 (82%), Gaps = 2/239 (0%)
 Frame = -3

Query: 1164 MAMTCYSTWGVLPSNPSSKTYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRSTQIR 985
            M + C S+  +LPS  SS     S++ +PFLGFS+ A  SKP+   +    N KR  Q++
Sbjct: 1    MTVLCSSSTVILPS--SSVKPSGSERKSPFLGFSLTAF-SKPSV-RVGIYANSKRGLQVK 56

Query: 984  CQDVDVEEATT--ALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDATD 811
            C+    EE TT  +L+P  Q+WMFD  +  GPDIWNTTWYPKASDH+NT+K W++VDATD
Sbjct: 57   CE---AEETTTKTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATD 113

Query: 810  KILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 631
            KILGRLASTIA HIRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG
Sbjct: 114  KILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 173

Query: 630  GMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454
            GM VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLP
Sbjct: 174  GMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLP 232


>ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis vinifera]
          Length = 235

 Score =  343 bits (880), Expect = 5e-92
 Identities = 173/239 (72%), Positives = 200/239 (83%), Gaps = 2/239 (0%)
 Frame = -3

Query: 1164 MAMTCYSTWGVLPS-NPSSK-TYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRSTQ 991
            MA+T  S+  +LPS +PS K ++ + +K TPFLGFS++A   KP+F         ++S +
Sbjct: 1    MAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSF--------PRQSFR 52

Query: 990  IRCQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDATD 811
            + CQD        A++P +Q+WMF+ ++  GPDIWN TWYPKA+DHINTEKTWYIVDATD
Sbjct: 53   VNCQD------KAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDATD 106

Query: 810  KILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 631
            KILGRLASTIAI+IRGKNLATYTPSVDMG+FVIVVNAEKVAVSGKKR QKLYRRHSGRPG
Sbjct: 107  KILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRPG 166

Query: 630  GMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454
            GMKVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQKP+DLP
Sbjct: 167  GMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLP 225


>ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana]
            gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S
            ribosomal protein L13, chloroplastic; AltName: Full=CL13;
            AltName: Full=Protein EMBRYO DEFECTIVE 1473; Flags:
            Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S
            Ribosomal protein L13 [Arabidopsis thaliana]
            gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal
            protein L13 [Arabidopsis thaliana]
            gi|7572938|emb|CAA60775.1| ribosomal protein L13
            [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1|
            putative ribosomal protein L13 [Arabidopsis thaliana]
            gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13
            [Arabidopsis thaliana]
          Length = 241

 Score =  343 bits (880), Expect = 5e-92
 Identities = 172/237 (72%), Positives = 196/237 (82%)
 Frame = -3

Query: 1164 MAMTCYSTWGVLPSNPSSKTYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRSTQIR 985
            MA+ C S+  +L S  SS     S++ +PFLGFS+ A+ SKP+   +    N KR  Q++
Sbjct: 1    MAVLCSSSTVILSS--SSVKSSGSERKSPFLGFSLTAI-SKPSV-RVGIYANSKRGLQVK 56

Query: 984  CQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDATDKI 805
            C+       TT+L+P  Q+WMFD  +  GPDIWNTTWYPKASDH+NT+K W++VDATDKI
Sbjct: 57   CEAEPT--TTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKI 114

Query: 804  LGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGM 625
            LGRLASTIA HIRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGM
Sbjct: 115  LGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGM 174

Query: 624  KVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454
             VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLP
Sbjct: 175  TVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLP 231


>gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 241

 Score =  325 bits (832), Expect = 2e-86
 Identities = 166/241 (68%), Positives = 190/241 (78%), Gaps = 4/241 (1%)
 Frame = -3

Query: 1164 MAMTCYSTWGVLPSNPSSK-TYCNSQKVTP---FLGFSMAAVCSKPTFCLIKSNNNKKRS 997
            MAM C S+     + PSS  +  N   ++P    +GFS     S+  F L    +N +R 
Sbjct: 1    MAMLCASSSFTTSTKPSSSYSTKNGTSISPSPFVVGFSF----SQSWFSL----SNSRRG 52

Query: 996  TQIRCQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDA 817
             ++RC+  D    T   +P +Q+W+F+ ++  GPDIWNTTWYPKA+DHINTEKTWYIVDA
Sbjct: 53   FEVRCEKKDKSVVTR--VPLDQRWLFEESEINGPDIWNTTWYPKAADHINTEKTWYIVDA 110

Query: 816  TDKILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGR 637
            TDKILGRLASTIAI+IRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGR
Sbjct: 111  TDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 170

Query: 636  PGGMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDL 457
            PGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVY GP HPHEAQKP++L
Sbjct: 171  PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYTGPTHPHEAQKPIEL 230

Query: 456  P 454
            P
Sbjct: 231  P 231