BLASTX nr result
ID: Cnidium21_contig00005548
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00005548 (1256 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI20115.3| unnamed protein product [Vitis vinifera] 345 1e-92 ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] g... 343 5e-92 ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloro... 343 5e-92 ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana... 343 5e-92 gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides] 325 2e-86 >emb|CBI20115.3| unnamed protein product [Vitis vinifera] Length = 374 Score = 345 bits (885), Expect = 1e-92 Identities = 174/240 (72%), Positives = 201/240 (83%), Gaps = 2/240 (0%) Frame = -3 Query: 1167 TMAMTCYSTWGVLPS-NPSSK-TYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRST 994 TMA+T S+ +LPS +PS K ++ + +K TPFLGFS++A KP+F ++S Sbjct: 139 TMAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSF--------PRQSF 190 Query: 993 QIRCQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDAT 814 ++ CQD A++P +Q+WMF+ ++ GPDIWN TWYPKA+DHINTEKTWYIVDAT Sbjct: 191 RVNCQD------KAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDAT 244 Query: 813 DKILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRP 634 DKILGRLASTIAI+IRGKNLATYTPSVDMG+FVIVVNAEKVAVSGKKR QKLYRRHSGRP Sbjct: 245 DKILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRP 304 Query: 633 GGMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454 GGMKVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQKP+DLP Sbjct: 305 GGMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLP 364 >ref|XP_002887748.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] gi|297333589|gb|EFH64007.1| EMB1473 [Arabidopsis lyrata subsp. lyrata] Length = 242 Score = 343 bits (880), Expect = 5e-92 Identities = 174/239 (72%), Positives = 197/239 (82%), Gaps = 2/239 (0%) Frame = -3 Query: 1164 MAMTCYSTWGVLPSNPSSKTYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRSTQIR 985 M + C S+ +LPS SS S++ +PFLGFS+ A SKP+ + N KR Q++ Sbjct: 1 MTVLCSSSTVILPS--SSVKPSGSERKSPFLGFSLTAF-SKPSV-RVGIYANSKRGLQVK 56 Query: 984 CQDVDVEEATT--ALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDATD 811 C+ EE TT +L+P Q+WMFD + GPDIWNTTWYPKASDH+NT+K W++VDATD Sbjct: 57 CE---AEETTTKTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATD 113 Query: 810 KILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 631 KILGRLASTIA HIRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG Sbjct: 114 KILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 173 Query: 630 GMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454 GM VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLP Sbjct: 174 GMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLP 232 >ref|XP_002285616.1| PREDICTED: 50S ribosomal protein L13, chloroplastic [Vitis vinifera] Length = 235 Score = 343 bits (880), Expect = 5e-92 Identities = 173/239 (72%), Positives = 200/239 (83%), Gaps = 2/239 (0%) Frame = -3 Query: 1164 MAMTCYSTWGVLPS-NPSSK-TYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRSTQ 991 MA+T S+ +LPS +PS K ++ + +K TPFLGFS++A KP+F ++S + Sbjct: 1 MAITFASSSVMLPSPSPSPKPSFGSLKKTTPFLGFSISAANPKPSF--------PRQSFR 52 Query: 990 IRCQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDATD 811 + CQD A++P +Q+WMF+ ++ GPDIWN TWYPKA+DHINTEKTWYIVDATD Sbjct: 53 VNCQD------KAAVVPLDQRWMFEQSEVSGPDIWNKTWYPKAADHINTEKTWYIVDATD 106 Query: 810 KILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPG 631 KILGRLASTIAI+IRGKNLATYTPSVDMG+FVIVVNAEKVAVSGKKR QKLYRRHSGRPG Sbjct: 107 KILGRLASTIAIYIRGKNLATYTPSVDMGSFVIVVNAEKVAVSGKKRTQKLYRRHSGRPG 166 Query: 630 GMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454 GMKVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGP HPHEAQKP+DLP Sbjct: 167 GMKVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPHHPHEAQKPIDLP 225 >ref|NP_177984.1| 50S ribosomal protein L13 [Arabidopsis thaliana] gi|75314103|sp|Q9SYL9.1|RK13_ARATH RecName: Full=50S ribosomal protein L13, chloroplastic; AltName: Full=CL13; AltName: Full=Protein EMBRYO DEFECTIVE 1473; Flags: Precursor gi|4836870|gb|AAD30573.1|AC007260_4 50S Ribosomal protein L13 [Arabidopsis thaliana] gi|13878111|gb|AAK44133.1|AF370318_1 putative ribosomal protein L13 [Arabidopsis thaliana] gi|7572938|emb|CAA60775.1| ribosomal protein L13 [Arabidopsis thaliana] gi|17104781|gb|AAL34279.1| putative ribosomal protein L13 [Arabidopsis thaliana] gi|332198009|gb|AEE36130.1| 50S ribosomal protein L13 [Arabidopsis thaliana] Length = 241 Score = 343 bits (880), Expect = 5e-92 Identities = 172/237 (72%), Positives = 196/237 (82%) Frame = -3 Query: 1164 MAMTCYSTWGVLPSNPSSKTYCNSQKVTPFLGFSMAAVCSKPTFCLIKSNNNKKRSTQIR 985 MA+ C S+ +L S SS S++ +PFLGFS+ A+ SKP+ + N KR Q++ Sbjct: 1 MAVLCSSSTVILSS--SSVKSSGSERKSPFLGFSLTAI-SKPSV-RVGIYANSKRGLQVK 56 Query: 984 CQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDATDKI 805 C+ TT+L+P Q+WMFD + GPDIWNTTWYPKASDH+NT+K W++VDATDKI Sbjct: 57 CEAEPT--TTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVVDATDKI 114 Query: 804 LGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGM 625 LGRLASTIA HIRGKNLA+YTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGM Sbjct: 115 LGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGRPGGM 174 Query: 624 KVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLP 454 VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLP Sbjct: 175 TVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPLDLP 231 >gb|ABK96526.1| unknown [Populus trichocarpa x Populus deltoides] Length = 241 Score = 325 bits (832), Expect = 2e-86 Identities = 166/241 (68%), Positives = 190/241 (78%), Gaps = 4/241 (1%) Frame = -3 Query: 1164 MAMTCYSTWGVLPSNPSSK-TYCNSQKVTP---FLGFSMAAVCSKPTFCLIKSNNNKKRS 997 MAM C S+ + PSS + N ++P +GFS S+ F L +N +R Sbjct: 1 MAMLCASSSFTTSTKPSSSYSTKNGTSISPSPFVVGFSF----SQSWFSL----SNSRRG 52 Query: 996 TQIRCQDVDVEEATTALIPREQQWMFDATDFKGPDIWNTTWYPKASDHINTEKTWYIVDA 817 ++RC+ D T +P +Q+W+F+ ++ GPDIWNTTWYPKA+DHINTEKTWYIVDA Sbjct: 53 FEVRCEKKDKSVVTR--VPLDQRWLFEESEINGPDIWNTTWYPKAADHINTEKTWYIVDA 110 Query: 816 TDKILGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHSGR 637 TDKILGRLASTIAI+IRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKR QKLYRRHSGR Sbjct: 111 TDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGR 170 Query: 636 PGGMKVETFDQLQQRIPERILEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDL 457 PGGM VETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVY GP HPHEAQKP++L Sbjct: 171 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYTGPTHPHEAQKPIEL 230 Query: 456 P 454 P Sbjct: 231 P 231