BLASTX nr result

ID: Cnidium21_contig00005498 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00005498
         (1319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257...   320   7e-85
emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]   320   7e-85
emb|CBI23698.3| unnamed protein product [Vitis vinifera]              315   1e-83
ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homol...   315   2e-83
ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C,...   306   8e-81

>ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
          Length = 464

 Score =  320 bits (819), Expect = 7e-85
 Identities = 165/238 (69%), Positives = 186/238 (78%), Gaps = 3/238 (1%)
 Frame = -2

Query: 1279 MDSDQGKLFIGGISWETDEQKLSEYFGNYGEVLLTSVMKDKLTGKPRGFGFVVFADPSVL 1100
            MDSDQGKLFIGGISWET E KL EYFG+YGEV    VM+DK TG+PRGFGFVVFADPS+L
Sbjct: 1    MDSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSIL 60

Query: 1099 DTVLQEKHVIDGRMVEPKRAMSREEQQVS-KAGNPSSGRNYGGG-DVRTKKIFVGGLPPT 926
            D VLQEKH+IDGR VE KRA+SREEQQ S +AGN +S RN GGG +V+TKKIFVGGLPPT
Sbjct: 61   DRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPT 120

Query: 925  LSEDEFRQYFENYGQVTDVVVMYDQQTNRPRGFGFISFDTEDAVDRVMHKNFHDLNGKQV 746
            LSE+ FRQYFE +G VTDVVVMYDQ T RPRGFGF+SFDTEDAVDRV++K FHDLNGKQV
Sbjct: 121  LSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQV 180

Query: 745  EVKRALPRDSNXXXXXXXXXXXXXXXXXXXXXXXXXXGNVSSYEGR-DSSRYMQSQNT 575
            EVKRALP+D+N                          GN ++Y+GR DS+RYMQ QNT
Sbjct: 181  EVKRALPKDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNT 238


>emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
          Length = 464

 Score =  320 bits (819), Expect = 7e-85
 Identities = 165/238 (69%), Positives = 186/238 (78%), Gaps = 3/238 (1%)
 Frame = -2

Query: 1279 MDSDQGKLFIGGISWETDEQKLSEYFGNYGEVLLTSVMKDKLTGKPRGFGFVVFADPSVL 1100
            MDSDQGKLFIGGISWET E KL EYFG+YGEV    VM+DK TG+PRGFGFVVFADPS+L
Sbjct: 1    MDSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSIL 60

Query: 1099 DTVLQEKHVIDGRMVEPKRAMSREEQQVS-KAGNPSSGRNYGGG-DVRTKKIFVGGLPPT 926
            D VLQEKH+IDGR VE KRA+SREEQQ S +AGN +S RN GGG +V+TKKIFVGGLPPT
Sbjct: 61   DRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPT 120

Query: 925  LSEDEFRQYFENYGQVTDVVVMYDQQTNRPRGFGFISFDTEDAVDRVMHKNFHDLNGKQV 746
            LSE+ FRQYFE +G VTDVVVMYDQ T RPRGFGF+SFDTEDAVDRV++K FHDLNGKQV
Sbjct: 121  LSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQV 180

Query: 745  EVKRALPRDSNXXXXXXXXXXXXXXXXXXXXXXXXXXGNVSSYEGR-DSSRYMQSQNT 575
            EVKRALP+D+N                          GN ++Y+GR DS+RYMQ QNT
Sbjct: 181  EVKRALPKDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNT 238


>emb|CBI23698.3| unnamed protein product [Vitis vinifera]
          Length = 388

 Score =  315 bits (808), Expect = 1e-83
 Identities = 165/238 (69%), Positives = 186/238 (78%), Gaps = 3/238 (1%)
 Frame = -2

Query: 1279 MDSDQGKLFIGGISWETDEQKLSEYFGNYGEVLLTSVMKDKLTGKPRGFGFVVFADPSVL 1100
            MDSDQGKLFIGGISWET E KL EYFG+YGEV    VM+DK TG+PRGFGFVVFADPS+L
Sbjct: 1    MDSDQGKLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSIL 60

Query: 1099 DTVLQEKHVIDGRMVEPKRAMSREEQQVS-KAGNPSSGRNYGGG-DVRTKKIFVGGLPPT 926
            D VLQEKH+IDGR VE KRA+SREEQQ S +AGN +S RN GGG +V+TKKIFVGGLPPT
Sbjct: 61   DRVLQEKHIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPT 120

Query: 925  LSEDEFRQYFENYGQVTDVVVMYDQQTNRPRGFGFISFDTEDAVDRVMHKNFHDLNGKQV 746
            LSE+ FRQYFE +G VTDVVVMYDQ T RPRGFGF+SFDTEDAVDRV++K FHDLNGKQV
Sbjct: 121  LSEEGFRQYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQV 180

Query: 745  EVKRALPRDSNXXXXXXXXXXXXXXXXXXXXXXXXXXGNVSSYEGR-DSSRYMQSQNT 575
            EVKRALP+D+N                          GN ++Y+GR DS+RYMQ QNT
Sbjct: 181  EVKRALPKDAN------------PGGGSRYQGYGASGGNPTTYDGRMDSNRYMQPQNT 226


>ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
          Length = 471

 Score =  315 bits (806), Expect = 2e-83
 Identities = 161/239 (67%), Positives = 190/239 (79%), Gaps = 5/239 (2%)
 Frame = -2

Query: 1279 MDSDQGKLFIGGISWETDEQKLSEYFGNYGEVLLTSVMKDKLTGKPRGFGFVVFADPSVL 1100
            MDSDQGKLFIGGISW+T E KL E+FGNYG+VL TSVM++K TGKPRGFGFVVFADP++L
Sbjct: 1    MDSDQGKLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNIL 60

Query: 1099 DTVLQEKHVIDGRMVEPKRAMSREEQQVS---KAGNPSSGRNYG-GGDVRTKKIFVGGLP 932
            D VL++KHVIDGR V+ K+A SRE+QQ+S   + GN +SG N G GG++RTKKIFVGGLP
Sbjct: 61   DRVLEDKHVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLP 120

Query: 931  PTLSEDEFRQYFENYGQVTDVVVMYDQQTNRPRGFGFISFDTEDAVDRVMHKNFHDLNGK 752
            PTL+E++FRQYFE+YG VTDVVVMYDQ T RPRGFGFISFDTEDAVDRV+HK+FHDLNGK
Sbjct: 121  PTLTEEKFRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKSFHDLNGK 180

Query: 751  QVEVKRALPRDSNXXXXXXXXXXXXXXXXXXXXXXXXXXGNVSSYEGR-DSSRYMQSQN 578
            QVEVKRALP+D+N                          GN ++Y+GR DSSRYMQ Q+
Sbjct: 181  QVEVKRALPKDAN---PGASGRMMGGAGGGGYQGYGASGGNQNAYDGRMDSSRYMQPQS 236


>ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
            communis] gi|223532245|gb|EEF34049.1| Heterogeneous
            nuclear ribonucleoprotein 27C, putative [Ricinus
            communis]
          Length = 470

 Score =  306 bits (784), Expect = 8e-81
 Identities = 160/244 (65%), Positives = 183/244 (75%), Gaps = 9/244 (3%)
 Frame = -2

Query: 1279 MDSDQGKLFIGGISWETDEQKLSEYFGNYGEVLLTSVMKDKLTGKPRGFGFVVFADPSVL 1100
            MDSDQGKLFIGGISWET E KL +YF  YG+V+ T VM+DK TG+PRGFGFVVFADP++L
Sbjct: 1    MDSDQGKLFIGGISWETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADPNIL 60

Query: 1099 DTVLQEKHVIDGRMVEPKRAMSREEQQVS-KAGNPSSGRNYG-GGDVRTKKIFVGGLPPT 926
            D VLQ+KH IDGR VE K+A+SREEQQ + ++GN +  RN G GG++RTKKIFVGGLPP 
Sbjct: 61   DRVLQDKHTIDGRTVEAKKALSREEQQTNARSGNLNPPRNSGSGGNIRTKKIFVGGLPPA 120

Query: 925  LSEDEFRQYFENYGQVTDVVVMYDQQTNRPRGFGFISFDTEDAVDRVMHKNFHDLNGKQV 746
            L++DEFRQYFE YG VTDVV+MYDQ T RPRGFGFISFD EDAVDRV+HK FHDLNGKQV
Sbjct: 121  LTDDEFRQYFEAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDAVDRVLHKTFHDLNGKQV 180

Query: 745  EVKRALPRDSN------XXXXXXXXXXXXXXXXXXXXXXXXXXGNVSSYEGR-DSSRYMQ 587
            EVKRALP+D+N                                GN SSYEGR DS+RYMQ
Sbjct: 181  EVKRALPKDANPGGGNRSMGGGGNIGGGGGGGAGGYQGYGASGGNASSYEGRIDSNRYMQ 240

Query: 586  SQNT 575
            SQ T
Sbjct: 241  SQGT 244



 Score = 64.7 bits (156), Expect = 5e-08
 Identities = 31/57 (54%), Positives = 35/57 (61%)
 Frame = -2

Query: 172 NQAAYGAVGGRPGGAPNSGLSAGADVQSSXXXXXXXXXGDPAGNSGYGNHGWRSEPS 2
           N A Y AVGGR GGAPNS + AG ++Q S         GD  GN GYG  GWRS+PS
Sbjct: 379 NPAGYSAVGGRSGGAPNSNVGAGGELQGSGGGYMGSDYGDANGNPGYGTAGWRSDPS 435


Top