BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00005421
         (629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vini...   187   1e-45
emb|CAN80452.1| hypothetical protein VITISV_029873 [Vitis vinifera]   182   3e-44
ref|XP_002531919.1| RNA and export factor binding protein, putat...   178   6e-43
emb|CAJ44458.1| ALY protein [Nicotiana benthamiana]                   177   1e-42
ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glyci...   174   1e-41

>ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vinifera]
           gi|296087136|emb|CBI33510.3| unnamed protein product
           [Vitis vinifera]
          Length = 269

 Score =  187 bits (476), Expect = 1e-45
 Identities = 94/159 (59%), Positives = 119/159 (74%), Gaps = 2/159 (1%)
 Frame = +2

Query: 2   SSRRTRGLPWQRDLFEESLRSVGLPAIDNDAKLFVSNLDSGVSNQDIRELFSEIGELKRY 181
           SSRRT+ +PWQ DLFE+SLR+ GLP ++   KL++SNLD GV+N+DIRELFSEIG++KRY
Sbjct: 67  SSRRTK-IPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEIGDIKRY 125

Query: 182 AIHYDKNGRPSGSAEVVFTRRSDAFQALKKYNNVQLDGKPMKIEIAGTSSDIPVLA--XX 355
           A+HY+KNGRPSGSAEVV+TRRSDAF A+K+YNNV LDGKPMKIEI G+ SD+PV A    
Sbjct: 126 AVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPVSARVNV 185

Query: 356 XXXXXXXXXXXXXMKPGMIRGRGSSAFGRNNGQRSRSAI 472
                        M PG+   RGS+A  R++ +R R  +
Sbjct: 186 IGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGL 224


>emb|CAN80452.1| hypothetical protein VITISV_029873 [Vitis vinifera]
          Length = 348

 Score =  182 bits (463), Expect = 3e-44
 Identities = 92/151 (60%), Positives = 115/151 (76%), Gaps = 2/151 (1%)
 Frame = +2

Query: 2   SSRRTRGLPWQRDLFEESLRSVGLPAIDNDAKLFVSNLDSGVSNQDIRELFSEIGELKRY 181
           SSRRT+ +PWQ DLFE+SLR+ GLP ++   KL++SNLD GV+N+DIRELFSEIG++KRY
Sbjct: 96  SSRRTK-IPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEIGDIKRY 154

Query: 182 AIHYDKNGRPSGSAEVVFTRRSDAFQALKKYNNVQLDGKPMKIEIAGTSSDIPVLA--XX 355
           A+HY+KNGRPSGSAEVV+TRRSDAF A+K+YNNV LDGKPMKIEI G+ SD+PV A    
Sbjct: 155 AVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPVSARVNV 214

Query: 356 XXXXXXXXXXXXXMKPGMIRGRGSSAFGRNN 448
                        M PG+   RGS+A  R++
Sbjct: 215 IGGVNGKRRRTVVMTPGVGHARGSTAINRSS 245


>ref|XP_002531919.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223528429|gb|EEF30463.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 268

 Score =  178 bits (452), Expect = 6e-43
 Identities = 90/157 (57%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
 Frame = +2

Query: 5   SRRTRGLPWQRDLFEESLRSVGLPAIDNDAKLFVSNLDSGVSNQDIRELFSEIGELKRYA 184
           +RR R LPWQ DL E+S+R+ G+  ++   KL+VSNL+ GVSN+DIRELF+EIG+LKRYA
Sbjct: 66  NRRIRNLPWQHDLLEDSIRAAGITGVEVGTKLYVSNLEYGVSNEDIRELFAEIGDLKRYA 125

Query: 185 IHYDKNGRPSGSAEVVFTRRSDAFQALKKYNNVQLDGKPMKIEIAGTSSDIPVLA-XXXX 361
           +HYDKNGR +GSAEVV+TRRS+AF ALKKYNNV LDGKPMKIEI G + + P+ A     
Sbjct: 126 VHYDKNGRSTGSAEVVYTRRSEAFAALKKYNNVLLDGKPMKIEIVGVTGEAPISARVNVT 185

Query: 362 XXXXXXXXXXXMKPGMIRGRGSSAFGRNNGQRSRSAI 472
                      M PG  RGRG +   R  GQRSR  +
Sbjct: 186 GINGRRKRTVVMTPGPGRGRGFAPSNRGAGQRSRGGL 222


>emb|CAJ44458.1| ALY protein [Nicotiana benthamiana]
          Length = 275

 Score =  177 bits (450), Expect = 1e-42
 Identities = 96/158 (60%), Positives = 115/158 (72%), Gaps = 4/158 (2%)
 Frame = +2

Query: 2   SSRRTRGLPWQRD--LFEESLRSVGLPA-IDNDAKLFVSNLDSGVSNQDIRELFSEIGEL 172
           S RRT+ LPWQ    LFE+SLR+ G+P+ +++  K++VSNLD GV+N DIRELFSEIGEL
Sbjct: 64  SFRRTKNLPWQNGNGLFEDSLRAAGIPSGLESGTKVYVSNLDVGVTNSDIRELFSEIGEL 123

Query: 173 KRYAIHYDKNGRPSGSAEVVFTRRSDAFQALKKYNNVQLDGKPMKIEIAGTSSDIPVLAX 352
            RYAIHYDKNGRPSG+AEVVF RRSDA+QALK+YNNVQLDGKPMKIE+    +D+P L+ 
Sbjct: 124 IRYAIHYDKNGRPSGAAEVVFARRSDAYQALKRYNNVQLDGKPMKIEVVAPPTDMP-LSA 182

Query: 353 XXXXXXXXXXXXXXMKPGMIRGRGS-SAFGRNNGQRSR 463
                         M PG  RGRGS SA  R + QR R
Sbjct: 183 RVDVGRGNGRRTVVMMPGSARGRGSASAANRGSSQRGR 220


>ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glycine max]
          Length = 298

 Score =  174 bits (441), Expect = 1e-41
 Identities = 81/116 (69%), Positives = 99/116 (85%)
 Frame = +2

Query: 2   SSRRTRGLPWQRDLFEESLRSVGLPAIDNDAKLFVSNLDSGVSNQDIRELFSEIGELKRY 181
           S RR R  PWQ DLFE+SLR+ G+  ++   KL+VSNLD GV+N+DIRELFSE+GELKR+
Sbjct: 85  SIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRF 144

Query: 182 AIHYDKNGRPSGSAEVVFTRRSDAFQALKKYNNVQLDGKPMKIEIAGTSSDIPVLA 349
           A+HYDKNG PSGSAEVV+TRRSDAF ALK+YNNV LDGKPMKIEI G++S++P+ A
Sbjct: 145 AVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISA 200