BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00004962
         (854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hy...   167   2e-39
gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsi...   144   3e-32
dbj|BAB09070.1| unnamed protein product [Arabidopsis thaliana] g...   143   4e-32
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   143   6e-32
emb|CAA72989.1| unnamed protein product [Brassica oleracea var. ...   142   7e-32

>dbj|BAD99219.1| polypeptide with a gag-like domain [Petunia x hybrida]
          Length = 463

 Score =  167 bits (424), Expect = 2e-39
 Identities = 77/163 (47%), Positives = 113/163 (69%)
 Frame = -2

Query: 490 SSSTSIPHTTPVSHTIPTLDQDNPLHLQNSDCPGMKLVSDSFDGTGFGNWKRSMTIALSA 311
           SSS S    +P+      LD ++P +L +SD PGM L++ SFDG+ +GNWKR + I+LSA
Sbjct: 17  SSSGSRDENSPLK----VLDINHPYYLASSDAPGMNLINTSFDGSSYGNWKRGVLISLSA 72

Query: 310 RNKLGFIDGSIPKPASDSPTFKIWSRCNDMVICWILGVLSKQIGRSVIYSSSAYEMWQEL 131
           +NKLGFI G+  KP  +   F+ W RC+DMV+ W+L  LSK+I  SV+YS +A E+WQEL
Sbjct: 73  KNKLGFITGAYKKPDKEDLLFEQWRRCSDMVLAWLLNSLSKEIAESVLYSQTAQELWQEL 132

Query: 130 EERYGVSNCAQLFGLHKDLSEITQGNTNIADYFTKLKMLWDDI 2
           E+RYG  +  ++F L ++L+ ++QG  ++A YF KLK +WD +
Sbjct: 133 EQRYGQIDGTKMFQLQRELNNVSQGTNDVAAYFNKLKRIWDQM 175


>gb|AAD15368.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17065314|gb|AAL32811.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|21387147|gb|AAM47977.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 411

 Score =  144 bits (362), Expect = 3e-32
 Identities = 64/142 (45%), Positives = 97/142 (68%)
 Frame = -2

Query: 427 DNPLHLQNSDCPGMKLVSDSFDGTGFGNWKRSMTIALSARNKLGFIDGSIPKPASDSPTF 248
           DNPL L +SD PG+ +V+   DG+ + +W  +M I+L A+NKLGF+DGS+ +P+ D  TF
Sbjct: 64  DNPLILHSSDHPGLSIVAHVLDGSNYNSWSIAMRISLDAKNKLGFVDGSLLRPSVDDSTF 123

Query: 247 KIWSRCNDMVICWILGVLSKQIGRSVIYSSSAYEMWQELEERYGVSNCAQLFGLHKDLSE 68
           +IWSRCN MV  WIL V++K+I  S++Y   A EMW +L  R+ V+N  + + L + +  
Sbjct: 124 RIWSRCNSMVKSWILNVVNKEIYDSILYYEDAVEMWTDLFTRFRVNNLPRKYQLEQAVMT 183

Query: 67  ITQGNTNIADYFTKLKMLWDDI 2
           + QG+ N++ YFTK K LW+ +
Sbjct: 184 LKQGSLNLSTYFTKKKTLWEQL 205


>dbj|BAB09070.1| unnamed protein product [Arabidopsis thaliana]
           gi|26450382|dbj|BAC42306.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|28973203|gb|AAO63926.1| unknown protein [Arabidopsis
           thaliana]
          Length = 357

 Score =  143 bits (361), Expect = 4e-32
 Identities = 68/184 (36%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
 Frame = -2

Query: 502 TMPESSSTSIPHTTPVSHTI-------------PTLD----QDNPLHLQNSDCPGMKLVS 374
           T   + S+ IP   P+S  I             P  D      +P  L N D PG  +VS
Sbjct: 22  TPDRTQSSPIPPVPPISSPIQQNFATRSSVYPFPQFDFADAHYSPYALSNGDNPGTTIVS 81

Query: 373 DSFDGTGFGNWKRSMTIALSARNKLGFIDGSIPKPASDSPTFKIWSRCNDMVICWILGVL 194
           +  DG+ F +WK +M +AL A+NK+ F+DG++P+P    P+F++WSRCN MV  WIL  +
Sbjct: 82  EVLDGSNFSSWKIAMFVALDAKNKIAFVDGTLPRPPEFDPSFRVWSRCNSMVKSWILNSV 141

Query: 193 SKQIGRSVIYSSSAYEMWQELEERYGVSNCAQLFGLHKDLSEITQGNTNIADYFTKLKML 14
           +KQI +S++  + A E+W++L+ R+ ++N  + + L + +  + QGN +++DY+T LK L
Sbjct: 142 TKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSLQQGNMSLSDYYTTLKTL 201

Query: 13  WDDI 2
           WDD+
Sbjct: 202 WDDL 205


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  143 bits (360), Expect = 6e-32
 Identities = 59/141 (41%), Positives = 97/141 (68%)
 Frame = -2

Query: 424 NPLHLQNSDCPGMKLVSDSFDGTGFGNWKRSMTIALSARNKLGFIDGSIPKPASDSPTFK 245
           +P  L N D PG  LVS+  DGT F +WK +M ++L A+NK+ F+DG++P+P    P+F+
Sbjct: 62  SPFALSNGDSPGNTLVSEVLDGTNFSSWKIAMFVSLYAKNKIAFVDGTLPRPPESDPSFR 121

Query: 244 IWSRCNDMVICWILGVLSKQIGRSVIYSSSAYEMWQELEERYGVSNCAQLFGLHKDLSEI 65
           +WSRCN MV  WIL  ++KQI +S++  + A E+W++L+ R+ ++N  + + L + +  +
Sbjct: 122 VWSRCNSMVKSWILNSVTKQIYKSILRFNDAAEIWKDLDTRFHITNLPRSYQLTQQIWSL 181

Query: 64  TQGNTNIADYFTKLKMLWDDI 2
            QG  +++DY+T LK LWDD+
Sbjct: 182 QQGTMSLSDYYTALKTLWDDL 202


>emb|CAA72989.1| unnamed protein product [Brassica oleracea var. acephala]
          Length = 1131

 Score =  142 bits (359), Expect = 7e-32
 Identities = 57/141 (40%), Positives = 101/141 (71%)
 Frame = -2

Query: 424 NPLHLQNSDCPGMKLVSDSFDGTGFGNWKRSMTIALSARNKLGFIDGSIPKPASDSPTFK 245
           +PL + N+D PG++L+S   DG+ + +W  +M IAL A+NK+GF+DG++ +P +  PTF+
Sbjct: 13  SPLFMHNADHPGLQLISLKLDGSNYDDWNAAMKIALDAKNKIGFVDGTLTRPDTSDPTFR 72

Query: 244 IWSRCNDMVICWILGVLSKQIGRSVIYSSSAYEMWQELEERYGVSNCAQLFGLHKDLSEI 65
           +WSRCN MV  W+L  +S QI RS++  + A ++W++L  R+ ++N  + F L +++ ++
Sbjct: 73  LWSRCNSMVKSWLLNSVSPQIYRSILRLNDAADIWRDLHGRFHMTNLPRTFNLTQEIQDL 132

Query: 64  TQGNTNIADYFTKLKMLWDDI 2
            QG+ +++DY+T LK LWD++
Sbjct: 133 KQGSMSLSDYYTTLKTLWDNL 153