BLASTX nr result
ID: Cnidium21_contig00004823
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00004823
(507 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN05371.1| Putative retroelement [Oryza sativa Japonica Grou... 120 5e-40
gb|AAK53851.1|AC016781_5 Putative copia-like retroelement [Oryza... 124 6e-40
gb|ABF95221.1| retrotransposon protein, putative, unclassified [... 118 1e-39
gb|ADB85329.1| putative retrotransposon protein [Phyllostachys e... 126 2e-39
emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis] 125 2e-39
>gb|AAN05371.1| Putative retroelement [Oryza sativa Japonica Group]
gi|31431391|gb|AAP53179.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1299
Score = 120 bits (302), Expect(3) = 5e-40
Identities = 53/85 (62%), Positives = 67/85 (78%)
Frame = -3
Query: 256 SCCAQILWIRNQLNDYGLVLNKIPIFCDNTSAIAISNNHVQHSRTKHIDIRYHFVREHVM 77
SCCAQ+LW++ L DYG+ K P+ CDN SAI I+NN VQHSRTKHIDIR+HF+R+HV+
Sbjct: 1196 SCCAQLLWMKQILLDYGISFTKTPLLCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVV 1255
Query: 76 NGTVVLRFVPTVDQIADIFTKPLDE 2
+V+ + T DQ+ADIFTKPLDE
Sbjct: 1256 KSDIVISHIRTEDQLADIFTKPLDE 1280
Score = 57.0 bits (136), Expect(3) = 5e-40
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -1
Query: 507 DSDYAGCRIDRKSTSGSCQFLGRRLISW 424
DSDYAGC++DRKSTSGSCQ LGR L+SW
Sbjct: 1147 DSDYAGCKVDRKSTSGSCQMLGRSLVSW 1174
Score = 32.3 bits (72), Expect(3) = 5e-40
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = -2
Query: 416 KKQHSVSTSTAEAEYIAAG 360
KKQ+SV+ STAEAEY++AG
Sbjct: 1177 KKQNSVALSTAEAEYVSAG 1195
>gb|AAK53851.1|AC016781_5 Putative copia-like retroelement [Oryza sativa Japonica Group]
Length = 809
Score = 124 bits (311), Expect(3) = 6e-40
Identities = 55/85 (64%), Positives = 69/85 (81%)
Frame = -3
Query: 256 SCCAQILWIRNQLNDYGLVLNKIPIFCDNTSAIAISNNHVQHSRTKHIDIRYHFVREHVM 77
SCCAQ+LW++ L DYGL ++KIP+ CDN SAI I+NNHVQHSRTKHIDIR+HF+R+H
Sbjct: 96 SCCAQLLWMKQTLRDYGLNVSKIPLICDNESAIKIANNHVQHSRTKHIDIRHHFLRDHST 155
Query: 76 NGTVVLRFVPTVDQIADIFTKPLDE 2
G + ++ V T Q+ADIFTKPLDE
Sbjct: 156 RGDIDIQHVRTDKQLADIFTKPLDE 180
Score = 55.5 bits (132), Expect(3) = 6e-40
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -1
Query: 507 DSDYAGCRIDRKSTSGSCQFLGRRLISW 424
D+DY GC++DRKSTSG+CQFLGR L+SW
Sbjct: 47 DADYVGCKVDRKSTSGTCQFLGRSLVSW 74
Score = 30.0 bits (66), Expect(3) = 6e-40
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = -2
Query: 416 KKQHSVSTSTAEAEYIAA 363
KKQ+SV+ STAEAEY++A
Sbjct: 77 KKQNSVTLSTAEAEYVSA 94
>gb|ABF95221.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2111
Score = 118 bits (296), Expect(3) = 1e-39
Identities = 53/85 (62%), Positives = 64/85 (75%)
Frame = -3
Query: 256 SCCAQILWIRNQLNDYGLVLNKIPIFCDNTSAIAISNNHVQHSRTKHIDIRYHFVREHVM 77
SCCAQ+LW+R L D+G KIP+ CDN SAI I+NN +QHSRTKHIDIR+HF+R+H
Sbjct: 1464 SCCAQLLWMRQTLKDFGYNFTKIPLLCDNESAIKIANNPIQHSRTKHIDIRHHFLRDHET 1523
Query: 76 NGTVVLRFVPTVDQIADIFTKPLDE 2
G + L V T Q+ADIFTKPLDE
Sbjct: 1524 KGDICLTHVRTESQLADIFTKPLDE 1548
Score = 57.0 bits (136), Expect(3) = 1e-39
Identities = 22/28 (78%), Positives = 27/28 (96%)
Frame = -1
Query: 507 DSDYAGCRIDRKSTSGSCQFLGRRLISW 424
DSDYAGC++DRKST+G+CQFLGR L+SW
Sbjct: 1415 DSDYAGCKVDRKSTTGTCQFLGRSLVSW 1442
Score = 33.1 bits (74), Expect(3) = 1e-39
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = -2
Query: 416 KKQHSVSTSTAEAEYIAAG 360
KKQ+S++ STAEAEY+AAG
Sbjct: 1445 KKQNSIALSTAEAEYVAAG 1463
>gb|ADB85329.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 338
Score = 126 bits (317), Expect(3) = 2e-39
Identities = 56/84 (66%), Positives = 70/84 (83%)
Frame = -3
Query: 256 SCCAQILWIRNQLNDYGLVLNKIPIFCDNTSAIAISNNHVQHSRTKHIDIRYHFVREHVM 77
SCC+QILW+ + L D+GLV+ +P+FCDNTSAI I+ N VQHSRTKHIDIRYHF+R+HV
Sbjct: 236 SCCSQILWMASTLRDFGLVIESVPLFCDNTSAINIAKNPVQHSRTKHIDIRYHFLRDHVE 295
Query: 76 NGTVVLRFVPTVDQIADIFTKPLD 5
G +VL+FV + Q+ADIFTKPLD
Sbjct: 296 KGDIVLQFVESDRQLADIFTKPLD 319
Score = 53.9 bits (128), Expect(3) = 2e-39
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -1
Query: 507 DSDYAGCRIDRKSTSGSCQFLGRRLISW 424
D+D+AGCRIDRKSTSG+CQF+G L+SW
Sbjct: 187 DADFAGCRIDRKSTSGTCQFIGTSLVSW 214
Score = 27.7 bits (60), Expect(3) = 2e-39
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 416 KKQHSVSTSTAEAEYIAA 363
+KQ V+ STAEAEY+AA
Sbjct: 217 RKQSGVAQSTAEAEYVAA 234
>emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis]
Length = 2029
Score = 125 bits (314), Expect(3) = 2e-39
Identities = 54/84 (64%), Positives = 71/84 (84%)
Frame = -3
Query: 256 SCCAQILWIRNQLNDYGLVLNKIPIFCDNTSAIAISNNHVQHSRTKHIDIRYHFVREHVM 77
SCC+Q+LW+ + L D+GLV++ +P+FCDNTSAI I+ N VQHSRTKHIDIR+HF+R+HV
Sbjct: 1878 SCCSQVLWMTSTLRDFGLVIDSVPLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVE 1937
Query: 76 NGTVVLRFVPTVDQIADIFTKPLD 5
G +VL+FV + Q+ADIFTKPLD
Sbjct: 1938 KGDIVLQFVESDHQLADIFTKPLD 1961
Score = 54.7 bits (130), Expect(3) = 2e-39
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = -1
Query: 507 DSDYAGCRIDRKSTSGSCQFLGRRLISW 424
D+D+AGCRIDRKSTSG+CQFLG L+SW
Sbjct: 1829 DADFAGCRIDRKSTSGTCQFLGTSLVSW 1856
Score = 27.7 bits (60), Expect(3) = 2e-39
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 416 KKQHSVSTSTAEAEYIAA 363
+KQ V+ STAEAEY+AA
Sbjct: 1859 RKQSGVAQSTAEAEYVAA 1876