BLASTX nr result
ID: Cnidium21_contig00004809
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00004809
(1262 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group] 92 3e-36
gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subc... 92 5e-36
gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-... 91 5e-36
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s... 92 6e-36
emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group] 92 6e-36
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
Length = 1319
Score = 91.7 bits (226), Expect(2) = 3e-36
Identities = 54/155 (34%), Positives = 74/155 (47%)
Frame = +1
Query: 220 YDGASWIAKKCGSY*VTGYVFTLVGGTIS*KSSNQTIITQSNFEVELCALDATRTEAEWL 399
Y ++WI+ +GYVFTL GG +S +S QTI+T+S E EL ALD EAEWL
Sbjct: 1148 YSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWL 1207
Query: 400 HGLMSVIPVVSRPLPTFAVYCDSRXXXXXXXXXXXXXXXXRYIQVRLKXXXXXXXXXXXX 579
L+ +PVV +P+P + CD++ R+++ RLK
Sbjct: 1208 RDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVIT 1267
Query: 580 XXXXXTQDNIADPMTKELGHMVVLKLRLGMRL*PI 684
T N+ADP TK L V+ M L PI
Sbjct: 1268 LDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302
Score = 88.2 bits (217), Expect(2) = 3e-36
Identities = 43/71 (60%), Positives = 52/71 (73%)
Frame = +2
Query: 5 SQLRYS*IIGSLQYLANYNRPDITYYVSKLARYTSCPNKTHWEVLDRILRYLKGTSSLGR 184
+QL YS IIGSL YLA+ RPDI++ VSKL+R+TS P HW VL+R++RYLKGT LG
Sbjct: 1077 NQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRVLERVMRYLKGTVELGL 1136
Query: 185 HYI*RSVVLEG 217
HY VLEG
Sbjct: 1137 HYTGYPAVLEG 1147
>gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1284
Score = 91.7 bits (226), Expect(2) = 5e-36
Identities = 53/155 (34%), Positives = 74/155 (47%)
Frame = +1
Query: 220 YDGASWIAKKCGSY*VTGYVFTLVGGTIS*KSSNQTIITQSNFEVELCALDATRTEAEWL 399
Y ++WI+ +GYVFTL GG +S +S QTI+T+S E EL ALD EAEWL
Sbjct: 1043 YSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWL 1102
Query: 400 HGLMSVIPVVSRPLPTFAVYCDSRXXXXXXXXXXXXXXXXRYIQVRLKXXXXXXXXXXXX 579
L+ +P+V +P+P + CD++ R+++ RLK
Sbjct: 1103 RDLLMDLPIVEKPVPAIVMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVIT 1162
Query: 580 XXXXXTQDNIADPMTKELGHMVVLKLRLGMRL*PI 684
T N+ADP TK L V+ M L PI
Sbjct: 1163 LDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1197
Score = 87.4 bits (215), Expect(2) = 5e-36
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = +2
Query: 5 SQLRYS*IIGSLQYLANYNRPDITYYVSKLARYTSCPNKTHWEVLDRILRYLKGTSSLGR 184
+QL YS IIGSL YLA+ RPDI++ VSKL+R+TS P HW L+R++RYLKGT LG
Sbjct: 972 NQLEYSQIIGSLMYLASTTRPDISFVVSKLSRFTSNPGDNHWRALERVMRYLKGTVELGL 1031
Query: 185 HYI*RSVVLEG 217
HY VLEG
Sbjct: 1032 HYTGYPAVLEG 1042
>gb|AAX96807.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77550001|gb|ABA92798.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1234
Score = 91.3 bits (225), Expect(2) = 5e-36
Identities = 53/159 (33%), Positives = 75/159 (47%)
Frame = +1
Query: 220 YDGASWIAKKCGSY*VTGYVFTLVGGTIS*KSSNQTIITQSNFEVELCALDATRTEAEWL 399
Y ++WI+ +GYVFTL GG +S +S QTI+T+S E EL ALD EAEWL
Sbjct: 1056 YSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELAALDTATVEAEWL 1115
Query: 400 HGLMSVIPVVSRPLPTFAVYCDSRXXXXXXXXXXXXXXXXRYIQVRLKXXXXXXXXXXXX 579
L+ +P+V P+P + CD++ R+++ RLK
Sbjct: 1116 RDLLMDLPIVENPVPAILMNCDNQTVIVKVNSSKNNMKSSRHVKRRLKSVRKLRNSEVIT 1175
Query: 580 XXXXXTQDNIADPMTKELGHMVVLKLRLGMRL*PIMIHL 696
T N+ADP TK L V+ M L P+ I +
Sbjct: 1176 LDYIQTARNLADPFTKVLSRNVIDNALKEMGLRPMKIRI 1214
Score = 87.8 bits (216), Expect(2) = 5e-36
Identities = 42/71 (59%), Positives = 52/71 (73%)
Frame = +2
Query: 5 SQLRYS*IIGSLQYLANYNRPDITYYVSKLARYTSCPNKTHWEVLDRILRYLKGTSSLGR 184
+QL YS IIGSL YLA+ RPDI++ VSKL+R+TS P HW L+R++RYLKGT LG
Sbjct: 985 NQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTMELGL 1044
Query: 185 HYI*RSVVLEG 217
HY V+LEG
Sbjct: 1045 HYSGYPVILEG 1055
>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 92.0 bits (227), Expect(2) = 6e-36
Identities = 58/177 (32%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Frame = +1
Query: 220 YDGASWIAKKCGSY*VTGYVFTLVGGTIS*KSSNQTIITQSNFEVELCALDATRTEAEWL 399
Y ++WI+ +GYVFTL GG +S +S QTI+T+S E EL ALD EAEWL
Sbjct: 1148 YSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWL 1207
Query: 400 HGLMSVIPVVSRPLPTFAVYCDSRXXXXXXXXXXXXXXXXRYIQVRLKXXXXXXXXXXXX 579
L+ +PVV +P+P + CD++ R+++ RLK
Sbjct: 1208 RDLLMDLPVVEKPVPAILMNCDNQTVIVKVNNSKDNMKSSRHVKRRLKSVRKLRNSGVIT 1267
Query: 580 XXXXXTQDNIADPMTKELGHMVVLKLRLGMRL*PI-------------MIHLWEEPN 711
T N+ADP TK L V+ M L PI M +LW + N
Sbjct: 1268 LDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPISNDAFMLVFICNVMTYLWNKLN 1324
Score = 86.7 bits (213), Expect(2) = 6e-36
Identities = 42/71 (59%), Positives = 51/71 (71%)
Frame = +2
Query: 5 SQLRYS*IIGSLQYLANYNRPDITYYVSKLARYTSCPNKTHWEVLDRILRYLKGTSSLGR 184
+QL YS IIGSL YLA+ RPDI++ VSKL+R+TS P HW L+R++RYLKGT LG
Sbjct: 1077 NQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGL 1136
Query: 185 HYI*RSVVLEG 217
HY VLEG
Sbjct: 1137 HYTGYPAVLEG 1147
>emb|CAE02325.2| OSJNBb0112E13.7 [Oryza sativa Japonica Group]
Length = 1342
Score = 91.7 bits (226), Expect(2) = 6e-36
Identities = 54/155 (34%), Positives = 74/155 (47%)
Frame = +1
Query: 220 YDGASWIAKKCGSY*VTGYVFTLVGGTIS*KSSNQTIITQSNFEVELCALDATRTEAEWL 399
Y ++WI+ +GYVFTL GG +S +S QTI+T+S E EL ALD EAEWL
Sbjct: 1148 YSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQTILTRSTMEAELTALDTATVEAEWL 1207
Query: 400 HGLMSVIPVVSRPLPTFAVYCDSRXXXXXXXXXXXXXXXXRYIQVRLKXXXXXXXXXXXX 579
L+ +PVV +P+P + CD++ R+++ RLK
Sbjct: 1208 RDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSSRHVKRRLKSVRKLRNSGVIT 1267
Query: 580 XXXXXTQDNIADPMTKELGHMVVLKLRLGMRL*PI 684
T N+ADP TK L V+ M L PI
Sbjct: 1268 LDYIQTARNLADPFTKGLSRNVIDNASKEMGLRPI 1302
Score = 87.0 bits (214), Expect(2) = 6e-36
Identities = 43/71 (60%), Positives = 51/71 (71%)
Frame = +2
Query: 5 SQLRYS*IIGSLQYLANYNRPDITYYVSKLARYTSCPNKTHWEVLDRILRYLKGTSSLGR 184
+QL YS IIGSL YLA+ RPDI++ VSKL+R+TS P HW L+RI+RYLKGT LG
Sbjct: 1077 NQLEYSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERIMRYLKGTVELGL 1136
Query: 185 HYI*RSVVLEG 217
HY VLEG
Sbjct: 1137 HYTGYPAVLEG 1147