BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00004796
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-contai...   129   3e-28
ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...   128   4e-28
ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabi...   127   1e-27
emb|CAB10245.1| RNA polymerase II fifth largest subunit like pro...   127   1e-27
ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...   126   2e-27

>ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7
           N-terminal domain-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 178

 Score =  129 bits (323), Expect = 3e-28
 Identities = 55/92 (59%), Positives = 78/92 (84%)
 Frame = +1

Query: 103 KMFAGEIVEGEVHKILQHGVFLRCGPVEHIYLSHLKMQGYSFVPGENPIFMSENSANIEE 282
           K+F GEI+ G VHK+L+HGVF+RCGP+E++YLS+ KM  Y +VPGENPIFM+E ++ I+ 
Sbjct: 82  KIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYVPGENPIFMNEKTSRIQV 141

Query: 283 GVMLRVMVIGVRYMEAENEFRAVASLDGDFLG 378
              +RV+VIG+++MEAE EF+A+ASL+GD+LG
Sbjct: 142 ETTVRVVVIGIKWMEAEREFQALASLEGDYLG 173


>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score =  128 bits (322), Expect = 4e-28
 Identities = 57/96 (59%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
 Frame = +1

Query: 94  GVT-KMFAGEIVEGEVHKILQHGVFLRCGPVEHIYLSHLKMQGYSFVPGENPIFMSENSA 270
           G+T K++ GEI+EG VHK+L+HGVFLRCGPVE+IYLS+LKM  Y +VPGENP+F+++  +
Sbjct: 77  GITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPVFLNDKLS 136

Query: 271 NIEEGVMLRVMVIGVRYMEAENEFRAVASLDGDFLG 378
            IE+ V++R +VIG +++EAE EF+A+ SL+GD+LG
Sbjct: 137 KIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLG 172


>ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
           gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis
           thaliana] gi|332658072|gb|AEE83472.1| DNA-directed RNA
           polymerase II subunit G [Arabidopsis thaliana]
          Length = 178

 Score =  127 bits (318), Expect = 1e-27
 Identities = 53/92 (57%), Positives = 77/92 (83%)
 Frame = +1

Query: 103 KMFAGEIVEGEVHKILQHGVFLRCGPVEHIYLSHLKMQGYSFVPGENPIFMSENSANIEE 282
           K+F GEI+ G VHK+L+HGVF+RCGP+E++YLS+ KM  Y ++PGENPIFM+E ++ I+ 
Sbjct: 82  KIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQV 141

Query: 283 GVMLRVMVIGVRYMEAENEFRAVASLDGDFLG 378
              +RV+VIG+++ME E EF+A+ASL+GD+LG
Sbjct: 142 ETTVRVVVIGIKWMEVEREFQALASLEGDYLG 173


>emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
           thaliana] gi|7268172|emb|CAB78508.1| RNA polymerase II
           fifth largest subunit like protein [Arabidopsis
           thaliana]
          Length = 161

 Score =  127 bits (318), Expect = 1e-27
 Identities = 53/92 (57%), Positives = 77/92 (83%)
 Frame = +1

Query: 103 KMFAGEIVEGEVHKILQHGVFLRCGPVEHIYLSHLKMQGYSFVPGENPIFMSENSANIEE 282
           K+F GEI+ G VHK+L+HGVF+RCGP+E++YLS+ KM  Y ++PGENPIFM+E ++ I+ 
Sbjct: 65  KIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQV 124

Query: 283 GVMLRVMVIGVRYMEAENEFRAVASLDGDFLG 378
              +RV+VIG+++ME E EF+A+ASL+GD+LG
Sbjct: 125 ETTVRVVVIGIKWMEVEREFQALASLEGDYLG 156


>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score =  126 bits (317), Expect = 2e-27
 Identities = 55/96 (57%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
 Frame = +1

Query: 94  GVT-KMFAGEIVEGEVHKILQHGVFLRCGPVEHIYLSHLKMQGYSFVPGENPIFMSENSA 270
           G+T K+F GEI+EG VHK+L+HGVF+RCGP+E+IYLS +KM  Y +VPGENP+F+++ ++
Sbjct: 78  GITFKIFRGEILEGVVHKVLKHGVFIRCGPIENIYLSCMKMPDYHYVPGENPVFLNDKTS 137

Query: 271 NIEEGVMLRVMVIGVRYMEAENEFRAVASLDGDFLG 378
            IE+ V++R +VIG +++EAE EF+A+ SL+GD+LG
Sbjct: 138 KIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLG 173