BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00004794
         (535 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II su...   103   2e-20
ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-contai...   103   2e-20
ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabi...   101   6e-20
emb|CAB10245.1| RNA polymerase II fifth largest subunit like pro...   101   6e-20
ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypep...   100   1e-19

>ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
           [Cucumis sativus] gi|449522228|ref|XP_004168129.1|
           PREDICTED: DNA-directed RNA polymerase II subunit
           RPB7-like [Cucumis sativus]
          Length = 175

 Score =  103 bits (257), Expect = 2e-20
 Identities = 47/85 (55%), Positives = 64/85 (75%)
 Frame = +2

Query: 2   GEVHKILKYGVFLRCGPVEHIYLPHLKMQGYSFVPGENPIFMSENSANIEKGVKLRVMVI 181
           G VHK+LK+GVFLRCGPVE+IYL +LKM  Y +VPGENP+F+++  + IEK V +R +VI
Sbjct: 90  GVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPVFLNDKLSKIEKDVVVRFIVI 149

Query: 182 GVRYMEAENEFRAVASXXXXXXXPV 256
           G +++EAE EF+A+ S       PV
Sbjct: 150 GTKWLEAEREFQALVSLEGDYLGPV 174


>ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7
           N-terminal domain-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 178

 Score =  103 bits (257), Expect = 2e-20
 Identities = 45/85 (52%), Positives = 65/85 (76%)
 Frame = +2

Query: 2   GEVHKILKYGVFLRCGPVEHIYLPHLKMQGYSFVPGENPIFMSENSANIEKGVKLRVMVI 181
           G VHK+LK+GVF+RCGP+E++YL + KM  Y +VPGENPIFM+E ++ I+    +RV+VI
Sbjct: 91  GVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYVPGENPIFMNEKTSRIQVETTVRVVVI 150

Query: 182 GVRYMEAENEFRAVASXXXXXXXPV 256
           G+++MEAE EF+A+AS       P+
Sbjct: 151 GIKWMEAEREFQALASLEGDYLGPL 175


>ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
           gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis
           thaliana] gi|332658072|gb|AEE83472.1| DNA-directed RNA
           polymerase II subunit G [Arabidopsis thaliana]
          Length = 178

 Score =  101 bits (252), Expect = 6e-20
 Identities = 43/85 (50%), Positives = 64/85 (75%)
 Frame = +2

Query: 2   GEVHKILKYGVFLRCGPVEHIYLPHLKMQGYSFVPGENPIFMSENSANIEKGVKLRVMVI 181
           G VHK+LK+GVF+RCGP+E++YL + KM  Y ++PGENPIFM+E ++ I+    +RV+VI
Sbjct: 91  GVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETTVRVVVI 150

Query: 182 GVRYMEAENEFRAVASXXXXXXXPV 256
           G+++ME E EF+A+AS       P+
Sbjct: 151 GIKWMEVEREFQALASLEGDYLGPL 175


>emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
           thaliana] gi|7268172|emb|CAB78508.1| RNA polymerase II
           fifth largest subunit like protein [Arabidopsis
           thaliana]
          Length = 161

 Score =  101 bits (252), Expect = 6e-20
 Identities = 43/85 (50%), Positives = 64/85 (75%)
 Frame = +2

Query: 2   GEVHKILKYGVFLRCGPVEHIYLPHLKMQGYSFVPGENPIFMSENSANIEKGVKLRVMVI 181
           G VHK+LK+GVF+RCGP+E++YL + KM  Y ++PGENPIFM+E ++ I+    +RV+VI
Sbjct: 74  GVVHKVLKHGVFMRCGPIENVYLSYTKMPDYKYIPGENPIFMNEKTSRIQVETTVRVVVI 133

Query: 182 GVRYMEAENEFRAVASXXXXXXXPV 256
           G+++ME E EF+A+AS       P+
Sbjct: 134 GIKWMEVEREFQALASLEGDYLGPL 158


>ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
           [Ricinus communis] gi|223538083|gb|EEF39694.1|
           DNA-directed RNA polymerase II 19 kD polypeptide rpb7,
           putative [Ricinus communis]
          Length = 176

 Score =  100 bits (250), Expect = 1e-19
 Identities = 44/85 (51%), Positives = 64/85 (75%)
 Frame = +2

Query: 2   GEVHKILKYGVFLRCGPVEHIYLPHLKMQGYSFVPGENPIFMSENSANIEKGVKLRVMVI 181
           G VHK+LK+GVF+RCGP+E+IYL  +KM  Y +VPGENP+F+++ ++ IEK V +R +VI
Sbjct: 91  GVVHKVLKHGVFIRCGPIENIYLSCMKMPDYHYVPGENPVFLNDKTSKIEKDVVVRFIVI 150

Query: 182 GVRYMEAENEFRAVASXXXXXXXPV 256
           G +++EAE EF+A+ S       PV
Sbjct: 151 GTKWLEAEREFQALVSLEGDYLGPV 175