BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00004411
         (971 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA15421.1| HMR1 protein [Antirrhinum majus]                       74   7e-11
gb|AAA50196.1| DNA-binding protein [Nicotiana tabacum]                 68   4e-09
gb|AAA34051.1| DNA-binding protein, partial [Nicotiana tabacum]        68   4e-09
ref|XP_003631087.1| HMG-Y-related protein A [Medicago truncatula...    62   2e-07
ref|XP_002321509.1| high mobility group family [Populus trichoca...    60   1e-06

>emb|CAA15421.1| HMR1 protein [Antirrhinum majus]
          Length = 400

 Score = 73.6 bits (179), Expect = 7e-11
 Identities = 54/150 (36%), Positives = 71/150 (47%), Gaps = 30/150 (20%)
 Frame = -1

Query: 971 GRPRKNVPVNGGGAAFFPVDGTGG------------------TGRPAK------------ 882
           GRP K + V  GGA   PV    G                   GRP K            
Sbjct: 243 GRPPKPINVVEGGAVAAPVAVPAGGVLPVAGGSVVAGVAPKRRGRPPKAGGEAKKPRLQT 302

Query: 881 MAVRRNTRKLSGKPLGRPKKDASALAVQAFNQQRLLSYQDLKGRVEHFQSRVNQTVDVIL 702
           +   +  RKLSGKPLGRPKK+A+A   Q  + Q L++Y DLKG++E+ QSRV    +VI 
Sbjct: 303 VVKPKTPRKLSGKPLGRPKKNAAAAVSQVADTQLLVAYLDLKGKLENLQSRVKLAANVIK 362

Query: 701 SYLDPEVAPVAVGMLQELQEISLIDMIGPP 612
             L  E    AV   QEL+ ++ ++   PP
Sbjct: 363 PCLTTE---DAVNAFQELEMLATLNTTAPP 389


>gb|AAA50196.1| DNA-binding protein [Nicotiana tabacum]
          Length = 546

 Score = 67.8 bits (164), Expect = 4e-09
 Identities = 33/87 (37%), Positives = 57/87 (65%)
 Frame = -1

Query: 896 GRPAKMAVRRNTRKLSGKPLGRPKKDASALAVQAFNQQRLLSYQDLKGRVEHFQSRVNQT 717
           G  A     +  RKLSGKPLGRP+K+ ++ AV   + + +++Y++LKG++EH QSR+ + 
Sbjct: 452 GAAAAAPTVKRPRKLSGKPLGRPRKNVTSPAVS--DPKLVVAYEELKGKLEHMQSRIKEA 509

Query: 716 VDVILSYLDPEVAPVAVGMLQELQEIS 636
            + +   L+ E   +A+  LQEL+E++
Sbjct: 510 ANALKPCLNAESPAIALAALQELEELA 536


>gb|AAA34051.1| DNA-binding protein, partial [Nicotiana tabacum]
          Length = 380

 Score = 67.8 bits (164), Expect = 4e-09
 Identities = 33/87 (37%), Positives = 57/87 (65%)
 Frame = -1

Query: 896 GRPAKMAVRRNTRKLSGKPLGRPKKDASALAVQAFNQQRLLSYQDLKGRVEHFQSRVNQT 717
           G  A     +  RKLSGKPLGRP+K+ ++ AV   + + +++Y++LKG++EH QSR+ + 
Sbjct: 286 GAAAAAPTVKRPRKLSGKPLGRPRKNVTSPAVS--DPKLVVAYEELKGKLEHMQSRIKEA 343

Query: 716 VDVILSYLDPEVAPVAVGMLQELQEIS 636
            + +   L+ E   +A+  LQEL+E++
Sbjct: 344 ANALKPCLNAESPAIALAALQELEELA 370


>ref|XP_003631087.1| HMG-Y-related protein A [Medicago truncatula]
           gi|92870991|gb|ABE80152.1| High mobility group proteins
           HMG-I and HMG-Y; Linker histone, N-terminal [Medicago
           truncatula] gi|355525109|gb|AET05563.1| HMG-Y-related
           protein A [Medicago truncatula]
          Length = 422

 Score = 62.4 bits (150), Expect = 2e-07
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
 Frame = -1

Query: 917 VDGTGGT--GRPAKMAVRRNTRKLSGKPLGRPKKDASALAVQAFNQQRLLSYQDLKGRVE 744
           V G G T  GRP K+AV    +  SG+P+GRPK       V           +DL+ ++E
Sbjct: 240 VPGAGATRRGRPKKLAVVGRPKNPSGRPIGRPKGAKGKKFVN----------EDLRRKLE 289

Query: 743 HFQSRVNQTVDVILSYLDPEVAPVAVGMLQELQEISLIDMIGP 615
           HFQS+V +++D++    D +    AV  +QEL+ ++ +D+  P
Sbjct: 290 HFQSKVKESLDILKPLFDHQSPATAVAAIQELEMLATLDLKAP 332


>ref|XP_002321509.1| high mobility group family [Populus trichocarpa]
           gi|118481017|gb|ABK92462.1| unknown [Populus
           trichocarpa] gi|118487368|gb|ABK95512.1| unknown
           [Populus trichocarpa] gi|222868505|gb|EEF05636.1| high
           mobility group family [Populus trichocarpa]
          Length = 478

 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
 Frame = -1

Query: 971 GRPRKNVPVNGGGAAFFPVDGTGGTGRPAKMAV--RRNTRKLSGKPLGRPKKDAS---AL 807
           GRPRK   +   G     V      GRP K+ V  +   +K SG+P+GRP+K+A+   A+
Sbjct: 305 GRPRKGAALAAAGVGAVVVQAKR-PGRPPKLPVIMKPKPKKSSGRPVGRPRKNANAPWAI 363

Query: 806 AVQAFNQQRLLSYQDLKGRVEHFQSRVNQTVDVILSYLDPEVAPVAVGMLQELQEISLID 627
              +  Q +   + DLK ++E FQSRV Q + V+  +L       AV  +QEL+ ++ +D
Sbjct: 364 TRASEPQAQAELHGDLKRKLEFFQSRVKQAIGVLKPHLTSATIS-AVAAIQELEGLASMD 422

Query: 626 MIGP 615
           +  P
Sbjct: 423 INVP 426