BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00003530
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   100   1e-19
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   100   1e-19
emb|CBI34757.3| unnamed protein product [Vitis vinifera]               98   6e-19
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...    96   4e-18
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...    89   4e-16

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score =  100 bits (249), Expect = 1e-19
 Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
 Frame = -1

Query: 379 QGQSAGSPSIHKKCERCKYCDGRRKDEYPRTIFKVSSKDIYGSTAILAKISERDFSRTE- 203
           +G  +GS  +  K   CKYC     D YP   FKVSSKD++  TAI+ +++E+   + + 
Sbjct: 144 KGADSGSRRLRSK--GCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQK 201

Query: 202 -----AIASDYWNFLPKDTQQEGNALKPNERILSHVQVHGLLTQIDPXXXXXXXXXXXDL 38
                 +  DYW+F+PKD QQE N L PN R+LSH QVH LL  IDP             
Sbjct: 202 KSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDS- 260

Query: 37  IFMNNFPVTPNS 2
            F+N  PVTPN+
Sbjct: 261 FFLNCLPVTPNN 272


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  100 bits (249), Expect = 1e-19
 Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
 Frame = -1

Query: 379 QGQSAGSPSIHKKCERCKYCDGRRKDEYPRTIFKVSSKDIYGSTAILAKISERDFSRTE- 203
           +G  +GS  +  K   CKYC     D YP   FKVSSKD++  TAI+ +++E+   + + 
Sbjct: 111 KGADSGSRRLRSK--GCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQK 168

Query: 202 -----AIASDYWNFLPKDTQQEGNALKPNERILSHVQVHGLLTQIDPXXXXXXXXXXXDL 38
                 +  DYW+F+PKD QQE N L PN R+LSH QVH LL  IDP             
Sbjct: 169 KSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDS- 227

Query: 37  IFMNNFPVTPNS 2
            F+N  PVTPN+
Sbjct: 228 FFLNCLPVTPNN 239


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 51/116 (43%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
 Frame = -1

Query: 331 CKYCDGRRKDEYPRTIFKVSSKDIYGSTAILAKISERDFSRTE------AIASDYWNFLP 170
           CKYC     D YP   FKVSSKD++  TAI+ +++E+   + +       +  DYW+F+P
Sbjct: 120 CKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIP 179

Query: 169 KDTQQEGNALKPNERILSHVQVHGLLTQIDPXXXXXXXXXXXDLIFMNNFPVTPNS 2
           KD QQE N L PN R+LSH QVH LL  IDP              F+N  PVTPN+
Sbjct: 180 KDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDS-FFLNCLPVTPNN 234


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
 Frame = -1

Query: 376 GQSAGSPSIHKKCERCKYCDGRRKDEYPRTIFKVSSKDIYGSTAILAKISERDFSRTE-- 203
           G+     S + + + C+YC G  KD YP   FK+S+ D++  + I+ ++ E    + +  
Sbjct: 110 GKVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKR 169

Query: 202 ----AIASDYWNFLPKDTQQEGNALKPNERILSHVQVHGLLTQIDPXXXXXXXXXXXDLI 35
                + SDYW+F+PKD QQE +  +PN +IL+H QVH LL  IDP            L 
Sbjct: 170 VAKGGLPSDYWDFIPKDEQQEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSL- 228

Query: 34  FMNNFPVTPNS 2
           F+N+FPVTPNS
Sbjct: 229 FLNSFPVTPNS 239


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 1517

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
 Frame = -1

Query: 331 CKYCDGRRKDEYPRTIFKVSSKDIYGSTAILAKISERDFSRTE-----AIASDYWNFLPK 167
           CKYC G     YP   FKVSSK+I+  TAI+A+I E    + +      +A+DYW+  PK
Sbjct: 152 CKYCAGNSLGWYPPMKFKVSSKEIFRKTAIIAEIRETLSKKPQKGFKKILAADYWDIFPK 211

Query: 166 DTQQEGNA--LKPNERILSHVQVHGLLTQIDPXXXXXXXXXXXDLIFMNNFPVTPNS 2
           D Q+E      KPN R+LSH QV  +L  +DP           D IF+N FPVTPNS
Sbjct: 212 DEQEEEEETNAKPNRRVLSHSQVRHMLKDVDP-NFIKLSILKTDTIFLNCFPVTPNS 267