BLASTX nr result

ID: Cnidium21_contig00003415 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00003415
         (1533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263798.1| PREDICTED: KH domain-containing protein At1g...   413   e-113
ref|XP_002526434.1| nucleic acid binding protein, putative [Rici...   392   e-106
ref|XP_002331132.1| predicted protein [Populus trichocarpa] gi|1...   387   e-105
ref|XP_002328717.1| predicted protein [Populus trichocarpa] gi|2...   383   e-104
ref|XP_004133720.1| PREDICTED: KH domain-containing protein At1g...   372   e-100

>ref|XP_002263798.1| PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera]
            gi|297739511|emb|CBI29693.3| unnamed protein product
            [Vitis vinifera]
          Length = 295

 Score =  413 bits (1062), Expect = e-113
 Identities = 214/301 (71%), Positives = 247/301 (82%), Gaps = 7/301 (2%)
 Frame = -1

Query: 1299 MDNRIPPGSFFQYSPTGVHGVHGSMHRSSS-PSDRERYLSELLAERQKLAPFMQVMPVCS 1123
            MD+R P GSFFQY P+G+H    S HRSSS  SDRERYL+ELLAE+QKL PFMQ++P CS
Sbjct: 1    MDDRRPHGSFFQYPPSGLHA---SPHRSSSLSSDRERYLAELLAEKQKLGPFMQILPQCS 57

Query: 1122 RLLSQEIMRASGLASNQNFVD-----HERSYRSFGQQPNGGPVDMESWPPMQTQQDNGLL 958
            RLL+QEI R S +A NQ FVD     H+  +RS GQ PNGGP+D+E WP MQT++ NG L
Sbjct: 58   RLLNQEIRRLSAIAPNQGFVDLERIEHDSPFRSLGQHPNGGPMDLEGWPAMQTEE-NGPL 116

Query: 957  RRMDPFQAASLGWPSSPGF-TTPVIKRVIRLDVPLEKFPNFNFVGRILGPRGNSLKRIEA 781
            RRM PFQA+SLGW  +PG  TTPV+KRVIRLDVP++K+PN+NFVGRILGPRGNSLKR+EA
Sbjct: 117  RRMAPFQASSLGWHRAPGIPTTPVVKRVIRLDVPVDKYPNYNFVGRILGPRGNSLKRVEA 176

Query: 780  MTECRIFIRGRGSVKDSMKEEKLKDKPGYEHLNEPLHLLVEAEFQEDIIESRLDHAVALL 601
            MTECR++IRG+GSVKD++KEEKLKDKPGYEHLNEPLH+LVEAEF EDII SRL+ AVA+L
Sbjct: 177  MTECRVYIRGQGSVKDAVKEEKLKDKPGYEHLNEPLHVLVEAEFSEDIINSRLEQAVAIL 236

Query: 600  ENLLKPVDESMDIYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXXPFNSAGMKRAKTG 421
            ENLLKPVDES+D YKKQQLRELAMLNGTLREE               PFN+AGMKRAKTG
Sbjct: 237  ENLLKPVDESLDQYKKQQLRELAMLNGTLREE--SPSMSPSMSPSMSPFNTAGMKRAKTG 294

Query: 420  R 418
            R
Sbjct: 295  R 295


>ref|XP_002526434.1| nucleic acid binding protein, putative [Ricinus communis]
            gi|223534214|gb|EEF35929.1| nucleic acid binding protein,
            putative [Ricinus communis]
          Length = 295

 Score =  392 bits (1007), Expect = e-106
 Identities = 206/301 (68%), Positives = 241/301 (80%), Gaps = 7/301 (2%)
 Frame = -1

Query: 1299 MDNRIPPGSFFQYSPTGVHGVHGSMHRSSS-PSDRERYLSELLAERQKLAPFMQVMPVCS 1123
            M  RI PGSFFQY P+G H    S HR SS  SDRERYL+ELLAERQKL PF+QV+P+CS
Sbjct: 2    MGERITPGSFFQYPPSGAH--QASPHRPSSLSSDRERYLAELLAERQKLVPFIQVLPLCS 59

Query: 1122 RLLSQEIMRASGLASNQNFVDHER-----SYRSFGQQPNGGPVDMESWPPMQTQQDNGLL 958
            RLL+QEI R SG    Q FVDHER      YRS GQQ NG P+D+E+WP M T++ NG L
Sbjct: 60   RLLNQEIRRVSGFT--QGFVDHERYEHESPYRSLGQQTNGRPMDLEAWPRMPTEE-NGHL 116

Query: 957  RRMDPFQAASLGWPSSPGF-TTPVIKRVIRLDVPLEKFPNFNFVGRILGPRGNSLKRIEA 781
            +RM  FQAAS+GWP  PG  TTPVIK+VIRLDVP++ +P++NFVGRILGPRGNSLKR+EA
Sbjct: 117  QRMASFQAASMGWPGVPGIPTTPVIKKVIRLDVPVDDYPSYNFVGRILGPRGNSLKRVEA 176

Query: 780  MTECRIFIRGRGSVKDSMKEEKLKDKPGYEHLNEPLHLLVEAEFQEDIIESRLDHAVALL 601
            MTECR++IRG+GSVKDS+KEEKLKDKPGYEHLNEPLH+LVEAEF EDI+++R++HAV +L
Sbjct: 177  MTECRVYIRGKGSVKDSVKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIVDARVEHAVTIL 236

Query: 600  ENLLKPVDESMDIYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXXPFNSAGMKRAKTG 421
            ++LLKPVDES+D YKKQQLRELAMLNGTLREE               PFN+AGMKRAKT 
Sbjct: 237  QSLLKPVDESLDHYKKQQLRELAMLNGTLREE--SPSMSPSMSPSMSPFNTAGMKRAKTV 294

Query: 420  R 418
            R
Sbjct: 295  R 295


>ref|XP_002331132.1| predicted protein [Populus trichocarpa] gi|118487494|gb|ABK95574.1|
            unknown [Populus trichocarpa] gi|222872860|gb|EEF09991.1|
            predicted protein [Populus trichocarpa]
          Length = 294

 Score =  387 bits (994), Expect = e-105
 Identities = 202/301 (67%), Positives = 238/301 (79%), Gaps = 7/301 (2%)
 Frame = -1

Query: 1299 MDNRIPPGSFFQYSPTGVHGVHGSMHRSSS-PSDRERYLSELLAERQKLAPFMQVMPVCS 1123
            M  RIP GS+FQY P+GVH  H +  RSSS PSD ERYL+ELLAE+ KL PF+QV+P+C 
Sbjct: 1    MGERIPSGSYFQYPPSGVH--HATPQRSSSLPSDLERYLAELLAEKHKLGPFVQVLPICC 58

Query: 1122 RLLSQEIMRASGLASNQNFVDHER-----SYRSFGQQPNGGPVDMESWPPMQTQQDNGLL 958
            RLL QEI RAS  A NQ FVDHER      +RS GQ PNG P+D+E W  M  +++NG L
Sbjct: 59   RLLYQEIRRAS--AYNQGFVDHERYEHESPFRSLGQHPNGRPMDLEGWSAMP-KEENGHL 115

Query: 957  RRMDPFQAASLGWPSSPGFT-TPVIKRVIRLDVPLEKFPNFNFVGRILGPRGNSLKRIEA 781
            +RM    AAS+GWP  PG + TPV+KRVIRLDVP++K+PN+NFVGRILGPRGNSLKR+EA
Sbjct: 116  QRMASLPAASMGWPGVPGISSTPVVKRVIRLDVPVDKYPNYNFVGRILGPRGNSLKRVEA 175

Query: 780  MTECRIFIRGRGSVKDSMKEEKLKDKPGYEHLNEPLHLLVEAEFQEDIIESRLDHAVALL 601
            +TECR++IRG+GSVKDS+KEEKLKDKPGYEHLNEPLH+LVEAEF EDI+ +RLDHA+ +L
Sbjct: 176  LTECRVYIRGKGSVKDSLKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIMNARLDHAITIL 235

Query: 600  ENLLKPVDESMDIYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXXPFNSAGMKRAKTG 421
            E+LLKPVDES D YKKQQLRELA+LNGTLREE               PFN+AGMKRAKTG
Sbjct: 236  ESLLKPVDESFDNYKKQQLRELALLNGTLREE--SPSMSPSMSPSMSPFNTAGMKRAKTG 293

Query: 420  R 418
            R
Sbjct: 294  R 294


>ref|XP_002328717.1| predicted protein [Populus trichocarpa] gi|222839015|gb|EEE77366.1|
            predicted protein [Populus trichocarpa]
          Length = 294

 Score =  383 bits (984), Expect = e-104
 Identities = 200/301 (66%), Positives = 238/301 (79%), Gaps = 7/301 (2%)
 Frame = -1

Query: 1299 MDNRIPPGSFFQYSPTGVHGVHGSMHRSSS-PSDRERYLSELLAERQKLAPFMQVMPVCS 1123
            M  RIPPGS+FQY P+GVH  H S HRS+S PSD ERYL+EL AE+ KL PF+QV+P C 
Sbjct: 1    MGERIPPGSYFQYPPSGVH--HASPHRSTSLPSDLERYLAELFAEKHKLGPFVQVLPNCC 58

Query: 1122 RLLSQEIMRASGLASNQNFVDHER-----SYRSFGQQPNGGPVDMESWPPMQTQQDNGLL 958
            RLL+QEI RAS  A NQ  VDHER      +RS GQ  NG  +D+E+W  M T++ NG L
Sbjct: 59   RLLNQEIRRAS--ACNQGLVDHERYEHESPFRSLGQHSNGRTMDLEAWSAMPTEE-NGHL 115

Query: 957  RRMDPFQAASLGWPSSPGFT-TPVIKRVIRLDVPLEKFPNFNFVGRILGPRGNSLKRIEA 781
            +RM  F AAS+GWP  PG   TPV+KRVIRLDVP++K+P++NFVGRILGPRGNSLKR+EA
Sbjct: 116  QRMASFPAASMGWPGVPGIPITPVVKRVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVEA 175

Query: 780  MTECRIFIRGRGSVKDSMKEEKLKDKPGYEHLNEPLHLLVEAEFQEDIIESRLDHAVALL 601
            +T+CR++IRG+GSVKDS+KEEKLKDKPGYEHLNEPLH+LVEAEF EDII +RL+HA+ +L
Sbjct: 176  LTDCRVYIRGKGSVKDSLKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINARLEHAITIL 235

Query: 600  ENLLKPVDESMDIYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXXPFNSAGMKRAKTG 421
            E+LLKPVDES+D YKKQQLRELA+LNGTLREE               PFN+AGMKRAKTG
Sbjct: 236  ESLLKPVDESLDHYKKQQLRELALLNGTLREE--SPSMSPSMSPSMSPFNTAGMKRAKTG 293

Query: 420  R 418
            R
Sbjct: 294  R 294


>ref|XP_004133720.1| PREDICTED: KH domain-containing protein At1g09660-like [Cucumis
            sativus] gi|449478123|ref|XP_004155228.1| PREDICTED: KH
            domain-containing protein At1g09660-like [Cucumis
            sativus]
          Length = 289

 Score =  372 bits (956), Expect = e-100
 Identities = 195/301 (64%), Positives = 230/301 (76%), Gaps = 7/301 (2%)
 Frame = -1

Query: 1299 MDNRIPPGSFFQYSPTGVHGVHGSMHRSSS-PSDRERYLSELLAERQKLAPFMQVMPVCS 1123
            M  R PPGS+F Y P   H    S HR+ S P DRER L+ELL+ERQKL PF+QV+P CS
Sbjct: 1    MGERTPPGSYFHYPPPSAHA---SPHRTPSIPLDRERCLAELLSERQKLGPFVQVLPHCS 57

Query: 1122 RLLSQEIMRASGLASNQNFVDHER-----SYRSFGQQPNGGPVDMESWPPMQTQQDNGLL 958
            RLL+QEI R SGL  NQ  VDHER      YRS GQ  NG P+DME WPPMQ  + +G +
Sbjct: 58   RLLNQEIRRLSGL--NQTSVDHERFEHGSPYRSLGQLSNGRPMDMEGWPPMQ-MEGSGHV 114

Query: 957  RRMDPFQAASLGWPSSPGF-TTPVIKRVIRLDVPLEKFPNFNFVGRILGPRGNSLKRIEA 781
              M P QA S+GWP   G  TTP++KRV+RLDVP++K+PN+NFVGR+LGPRGNSLKR+EA
Sbjct: 115  HGMGPLQAHSMGWPRVQGIPTTPIVKRVVRLDVPVDKYPNYNFVGRLLGPRGNSLKRVEA 174

Query: 780  MTECRIFIRGRGSVKDSMKEEKLKDKPGYEHLNEPLHLLVEAEFQEDIIESRLDHAVALL 601
            +TECR++IRG+GS+KD+++EEKLKDKPGYEHLNEPLHLLVEAEF ED I +RLDHAVA+L
Sbjct: 175  LTECRVYIRGKGSIKDALEEEKLKDKPGYEHLNEPLHLLVEAEFPEDTINARLDHAVAVL 234

Query: 600  ENLLKPVDESMDIYKKQQLRELAMLNGTLREEXXXXXXXXXXXXXXXPFNSAGMKRAKTG 421
            E+LLKPVDE +D YKKQQLRELA+LNGTLREE               PFNS G+KRAKTG
Sbjct: 235  ESLLKPVDELLDQYKKQQLRELALLNGTLREE------SPSMSPSMSPFNSTGLKRAKTG 288

Query: 420  R 418
            R
Sbjct: 289  R 289


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