BLASTX nr result
ID: Cnidium21_contig00003255
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00003255
(1447 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum] 426 e-137
sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding prot... 417 e-135
gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum] 416 e-134
gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum] 394 e-128
ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum] g... 395 e-127
>gb|AAB92518.1| putative RNA binding protein [Nicotiana tabacum]
Length = 482
Score = 426 bits (1095), Expect(2) = e-137
Identities = 214/307 (69%), Positives = 250/307 (81%), Gaps = 8/307 (2%)
Frame = +2
Query: 332 QSERFGFIEFLSHAAAEKVLQTYNGTAMPNADQLAFRLNWATFSTGERRQDAGSDLSVFV 511
QSER+GF+EF +HAAAEKVLQ+YNGT MPNA+Q FRLNWA FSTGE+R + GSD S+FV
Sbjct: 177 QSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQ-PFRLNWAGFSTGEKRAETGSDFSIFV 235
Query: 512 GDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMTEMNG 691
GDLASDVTDT+L +TFA+RYPS++GAKVVVDANTG SKGYGFVRFGDE+ERSRAMTEMNG
Sbjct: 236 GDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNG 295
Query: 692 QYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIANGA-----QSENDTSNTTVFVGG 856
YCSSR MRIGVATPKKPSAQQQY SQAV+LSGG +NGA QS+ D SNTT+FVGG
Sbjct: 296 VYCSSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQSDGDASNTTIFVGG 355
Query: 857 LDSDITDEELRQTFSEFGEVLSVKIPVGKGCGFVQFSNRSSAEESIQQLNNTVIGKSTLR 1036
LDSD+TDEELRQ+F++FGEV+SVKIP GKGCGFVQFS+RSSA+E+IQ+L+ +IGK +R
Sbjct: 356 LDSDVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVR 415
Query: 1037 LSWGRTPANKQSRMET---XXXXXXXXXXXXXXXXTVPQGQDPNMYASGAGYGAPTNGYG 1207
LSWGR+PANKQ R ++ Q QD MYA+GA YGA +NGYG
Sbjct: 416 LSWGRSPANKQMRADSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNGYG 475
Query: 1208 NH*QPVN 1228
NH QPV+
Sbjct: 476 NHQQPVS 482
Score = 91.7 bits (226), Expect(2) = e-137
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 115 TSEDNKTIWIGDLQPWMDEPYLQSCFAPTGEAIAVKIIRNKQTGQSERFGF 267
+SEDNKTIWIGDLQ WMDE YL SCF+ GE I+VKIIRNKQTGQSER+GF
Sbjct: 133 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGF 183
Score = 70.9 bits (172), Expect = 8e-10
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 7/236 (2%)
Frame = +2
Query: 353 IEFLSHAAAEKVLQTYNGTAMPNADQLAFRLNWATFSTGERRQDAGSDLSVFVGDLASDV 532
+++ + A A + Y MP Q + S + + + + ++++GDL +
Sbjct: 90 MQYPAAAMAMQQQMMYGQQYMPYYQQHQQQQQKMQQSPTQIQSSSEDNKTIWIGDLQQWM 149
Query: 533 TDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMTEMNGQYCSSRP 712
++ LH F+ + V K++ + TG+S+ YGFV F + + NG
Sbjct: 150 DESYLHSCFS-QAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSYNG------- 201
Query: 713 MRIGVATPKKPSAQQQYPSQAVVLSGGAIANGAQSENDTSNTTVFVGGLDSDITDEELRQ 892
P+A+Q + L+ + G + S+ ++FVG L SD+TD LR
Sbjct: 202 -------TMMPNAEQPFR-----LNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRD 249
Query: 893 TF-SEFGEVLSVKIPV------GKGCGFVQFSNRSSAEESIQQLNNTVIGKSTLRL 1039
TF S + + K+ V KG GFV+F + S ++ ++N +R+
Sbjct: 250 TFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRI 305
>sp|Q9LEB3.1|RBP47_NICPL RecName: Full=Polyadenylate-binding protein RBP47;
Short=Poly(A)-binding protein RBP47; AltName:
Full=RNA-binding protein 47; Short=NplRBP47
gi|9663769|emb|CAC01238.1| RNA Binding Protein 47
[Nicotiana plumbaginifolia]
Length = 428
Score = 417 bits (1072), Expect(2) = e-135
Identities = 209/307 (68%), Positives = 248/307 (80%), Gaps = 8/307 (2%)
Frame = +2
Query: 332 QSERFGFIEFLSHAAAEKVLQTYNGTAMPNADQLAFRLNWATFSTGERRQDAGSDLSVFV 511
QSER+GF+EF +HAAAEKVLQ+YNGT MPN +Q FRLNWA FSTGE+R + GSD S+FV
Sbjct: 123 QSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQ-PFRLNWAGFSTGEKRAETGSDFSIFV 181
Query: 512 GDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMTEMNG 691
GDLASDVTDT+L +TFA+RYPS++GAKVVVDANTG SKGYGFVRFGDE+ERSRAMTEMNG
Sbjct: 182 GDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNG 241
Query: 692 QYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIANGA-----QSENDTSNTTVFVGG 856
YCSSR MRIGVATPKKPSA +QY SQAV+LSGG +NGA QS+ D+SNTT+FVGG
Sbjct: 242 VYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGG 301
Query: 857 LDSDITDEELRQTFSEFGEVLSVKIPVGKGCGFVQFSNRSSAEESIQQLNNTVIGKSTLR 1036
LDS++TDEELRQ+F++FGEV+SVKIP GKGCGFVQFS+RSSA+E+IQ+L+ +IGK +R
Sbjct: 302 LDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVR 361
Query: 1037 LSWGRTPANKQSRMET---XXXXXXXXXXXXXXXXTVPQGQDPNMYASGAGYGAPTNGYG 1207
LSWGR+PANKQ R ++ Q QD MYA+GA YGA +N YG
Sbjct: 362 LSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYG 421
Query: 1208 NH*QPVN 1228
NH QPV+
Sbjct: 422 NHQQPVS 428
Score = 91.7 bits (226), Expect(2) = e-135
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 115 TSEDNKTIWIGDLQPWMDEPYLQSCFAPTGEAIAVKIIRNKQTGQSERFGF 267
+SEDNKTIWIGDLQ WMDE YL SCF+ GE I+VKIIRNKQTGQSER+GF
Sbjct: 79 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGF 129
Score = 68.9 bits (167), Expect = 3e-09
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 7/187 (3%)
Frame = +2
Query: 500 SVFVGDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMT 679
++++GDL + ++ LH F+ + V K++ + TG+S+ YGFV F + +
Sbjct: 85 TIWIGDLQQWMDESYLHSCFS-QAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 680 EMNGQYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIANGAQSENDTSNTTVFVGGL 859
NG P+ +Q + L+ + G + S+ ++FVG L
Sbjct: 144 SYNG--------------TMMPNTEQPFR-----LNWAGFSTGEKRAETGSDFSIFVGDL 184
Query: 860 DSDITDEELRQTF-SEFGEVLSVKIPV------GKGCGFVQFSNRSSAEESIQQLNNTVI 1018
SD+TD LR TF S + + K+ V KG GFV+F + S ++ ++N
Sbjct: 185 ASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYC 244
Query: 1019 GKSTLRL 1039
+R+
Sbjct: 245 SSRAMRI 251
>gb|AAC49850.1| DNA binding protein ACBF [Nicotiana tabacum]
Length = 428
Score = 416 bits (1068), Expect(2) = e-134
Identities = 214/308 (69%), Positives = 249/308 (80%), Gaps = 9/308 (2%)
Frame = +2
Query: 332 QSERFGFIEFLSHAAAEKVLQTYNGTAMPNADQLAFRLNWATFSTGERRQDAGSDLSVFV 511
QSER+GF+EF +HAAAEKVLQ+YNGT MPNA+Q FRLNWA FSTGE+R + GSD S+FV
Sbjct: 123 QSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQ-PFRLNWAGFSTGEKRAETGSDFSIFV 181
Query: 512 GDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMTEMNG 691
GDLASDVTDT+L +TFA+RYPS++GAKVVVDANTG SKGYGFVRFGDE+ERSRAMTEMNG
Sbjct: 182 GDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNG 241
Query: 692 QYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIANGA-----QSENDTSNTTVFVGG 856
YCSSR MRIGVATPKKPSAQQQY SQAV+LSGG +NGA QS+ D SNTT+FVGG
Sbjct: 242 VYCSSRAMRIGVATPKKPSAQQQYSSQAVILSGGYASNGAATHGSQSDGDASNTTIFVGG 301
Query: 857 LDSDITDEELRQTFSEFGEVLSVKIPVGKGCGFVQFSNRSSAEESIQQLNNTVIGKSTLR 1036
LDSD+TDEELRQ+F++FGEV+SVKIP GKGCGFVQFS+RSSA+E+IQ+L+ +IGK +R
Sbjct: 302 LDSDVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVR 361
Query: 1037 LSWGRTPANKQSRMET---XXXXXXXXXXXXXXXXTVPQGQDPNMYASG-AGYGAPTNGY 1204
LSWGRT ANKQ R ++ Q QD MYA+G A YGA +NGY
Sbjct: 362 LSWGRT-ANKQMRADSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAAYGASSNGY 420
Query: 1205 GNH*QPVN 1228
GNH QPV+
Sbjct: 421 GNHQQPVS 428
Score = 91.7 bits (226), Expect(2) = e-134
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 115 TSEDNKTIWIGDLQPWMDEPYLQSCFAPTGEAIAVKIIRNKQTGQSERFGF 267
+SEDNKTIWIGDLQ WMDE YL SCF+ GE I+VKIIRNKQTGQSER+GF
Sbjct: 79 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGF 129
Score = 70.5 bits (171), Expect = 1e-09
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%)
Frame = +2
Query: 500 SVFVGDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMT 679
++++GDL + ++ LH F+ + V K++ + TG+S+ YGFV F + +
Sbjct: 85 TIWIGDLQQWMDESYLHSCFS-QAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 143
Query: 680 EMNGQYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIANGAQSENDTSNTTVFVGGL 859
NG P+A+Q + L+ + G + S+ ++FVG L
Sbjct: 144 SYNG--------------TMMPNAEQPFR-----LNWAGFSTGEKRAETGSDFSIFVGDL 184
Query: 860 DSDITDEELRQTF-SEFGEVLSVKIPV------GKGCGFVQFSNRSSAEESIQQLNNTVI 1018
SD+TD LR TF S + + K+ V KG GFV+F + S ++ ++N
Sbjct: 185 ASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYC 244
Query: 1019 GKSTLRL 1039
+R+
Sbjct: 245 SSRAMRI 251
>gb|ABB86267.1| DNA binding protein ACBF-like [Solanum tuberosum]
Length = 372
Score = 394 bits (1013), Expect(2) = e-128
Identities = 191/256 (74%), Positives = 228/256 (89%), Gaps = 5/256 (1%)
Frame = +2
Query: 332 QSERFGFIEFLSHAAAEKVLQTYNGTAMPNADQLAFRLNWATFSTGERRQDAGSDLSVFV 511
QSER+GF+EF +HAAAEKVLQ+YNGT MPNA+Q FRLNWA FS GE+R + GSD S+FV
Sbjct: 72 QSERYGFVEFNTHAAAEKVLQSYNGTMMPNAEQ-PFRLNWAAFSAGEKRAETGSDFSIFV 130
Query: 512 GDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMTEMNG 691
GDLASDVTDT+L +TFA+R+PSV+GAKVVVDANTG SKGYGFVRFGDE+ERSRAMTEMNG
Sbjct: 131 GDLASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNG 190
Query: 692 QYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIAN-----GAQSENDTSNTTVFVGG 856
YCSSRPMR+GVATPKKPSAQQQ+ SQAV+LSGG +N G+QS+ D+SNTT+FVGG
Sbjct: 191 IYCSSRPMRVGVATPKKPSAQQQFSSQAVILSGGYASNGSATHGSQSDGDSSNTTIFVGG 250
Query: 857 LDSDITDEELRQTFSEFGEVLSVKIPVGKGCGFVQFSNRSSAEESIQQLNNTVIGKSTLR 1036
LDSD+TDEELRQ+F++FGEV+SVKIP GKGCGFVQFS+RSSA+E+IQ+L+ +IGK +R
Sbjct: 251 LDSDVTDEELRQSFTQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVR 310
Query: 1037 LSWGRTPANKQSRMET 1084
LSWGR+PANKQ R ++
Sbjct: 311 LSWGRSPANKQMRTDS 326
Score = 90.9 bits (224), Expect(2) = e-128
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +1
Query: 115 TSEDNKTIWIGDLQPWMDEPYLQSCFAPTGEAIAVKIIRNKQTGQSERFGF 267
+SEDNKTIWIGDLQ WMDE YL SCF+ GE I+VKIIRNKQTGQSER+GF
Sbjct: 28 SSEDNKTIWIGDLQQWMDENYLHSCFSHAGEVISVKIIRNKQTGQSERYGF 78
Score = 71.6 bits (174), Expect = 5e-10
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 7/187 (3%)
Frame = +2
Query: 500 SVFVGDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRAMT 679
++++GDL + + LH F+ V K++ + TG+S+ YGFV F + +
Sbjct: 34 TIWIGDLQQWMDENYLHSCFS-HAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQ 92
Query: 680 EMNGQYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIANGAQSENDTSNTTVFVGGL 859
NG P+A+Q + L+ A + G + S+ ++FVG L
Sbjct: 93 SYNG--------------TMMPNAEQPFR-----LNWAAFSAGEKRAETGSDFSIFVGDL 133
Query: 860 DSDITDEELRQTF-SEFGEVLSVKIPV------GKGCGFVQFSNRSSAEESIQQLNNTVI 1018
SD+TD LR TF S F V K+ V KG GFV+F + S ++ ++N
Sbjct: 134 ASDVTDTMLRDTFASRFPSVKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGIYC 193
Query: 1019 GKSTLRL 1039
+R+
Sbjct: 194 SSRPMRV 200
>ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum] gi|40804404|gb|AAR91698.1|
DNA-binding protein [Solanum lycopersicum]
Length = 428
Score = 395 bits (1016), Expect(2) = e-127
Identities = 205/313 (65%), Positives = 246/313 (78%), Gaps = 14/313 (4%)
Frame = +2
Query: 332 QSERFGFIEFLSHAAAEKVLQTYNGTAMPNADQLAFRLNWATFSTGERRQD------AGS 493
QSER+GFIEF +H AAEKVLQ+YNGT MPNA+Q FRLNW+ FS+GE+R D +GS
Sbjct: 118 QSERYGFIEFNTHEAAEKVLQSYNGTMMPNAEQ-PFRLNWSAFSSGEKRADVGAGAGSGS 176
Query: 494 DLSVFVGDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGDETERSRA 673
DLS+FVGDLASDVTDT+L +TF++RYPSV+GAKVV+D+NTGRSKGYGFVRF DE+ERSRA
Sbjct: 177 DLSIFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESERSRA 236
Query: 674 MTEMNGQYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGAIANGA-----QSENDTSNT 838
MTEMNG YCSSR MRIGVATPKKPS QQY QAV+L+GG +NGA Q+++D SNT
Sbjct: 237 MTEMNGIYCSSRAMRIGVATPKKPSPMQQYFPQAVILAGGHASNGAATQTSQTDSDLSNT 296
Query: 839 TVFVGGLDSDITDEELRQTFSEFGEVLSVKIPVGKGCGFVQFSNRSSAEESIQQLNNTVI 1018
TVFVGGLDS++TDEELRQ+FS+FG V+SVKIP GKGCGFVQFS RS+AE++I++LN TVI
Sbjct: 297 TVFVGGLDSEVTDEELRQSFSQFGNVVSVKIPAGKGCGFVQFSERSAAEDAIEKLNGTVI 356
Query: 1019 GKSTLRLSWGRTPANKQSRMET---XXXXXXXXXXXXXXXXTVPQGQDPNMYASGAGYGA 1189
G T+RLSWGR PANKQ R ++ Q QD +MY +GA +GA
Sbjct: 357 GAQTVRLSWGRNPANKQFRTDSGSQWNGGYYGRQNYGGYGYGASQSQD-SMYGAGAAHGA 415
Query: 1190 PTNGYGNH*QPVN 1228
+NGYGNH Q V+
Sbjct: 416 SSNGYGNHEQSVS 428
Score = 89.4 bits (220), Expect(2) = e-127
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +1
Query: 118 SEDNKTIWIGDLQPWMDEPYLQSCFAPTGEAIAVKIIRNKQTGQSERFGF 267
SEDN+TIWIGDLQ WMDE YL +CFA GE I+VK+IRNKQTGQSER+GF
Sbjct: 75 SEDNRTIWIGDLQQWMDEGYLHTCFAQAGEVISVKVIRNKQTGQSERYGF 124
Score = 72.0 bits (175), Expect = 4e-10
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 12/214 (5%)
Frame = +2
Query: 476 RQDAGSD-LSVFVGDLASDVTDTVLHETFATRYPSVRGAKVVVDANTGRSKGYGFVRFGD 652
+Q+A D ++++GDL + + LH FA + V KV+ + TG+S+ YGF+ F
Sbjct: 71 QQNASEDNRTIWIGDLQQWMDEGYLHTCFA-QAGEVISVKVIRNKQTGQSERYGFIEFNT 129
Query: 653 ETERSRAMTEMNGQYCSSRPMRIGVATPKKPSAQQQYPSQAVVLSGGA----IANGAQSE 820
+ + NG P+A+Q + S G + GA S
Sbjct: 130 HEAAEKVLQSYNG--------------TMMPNAEQPFRLNWSAFSSGEKRADVGAGAGSG 175
Query: 821 NDTSNTTVFVGGLDSDITDEELRQTF-SEFGEVLSVKIPV------GKGCGFVQFSNRSS 979
+D S +FVG L SD+TD LR TF S + V K+ + KG GFV+F + S
Sbjct: 176 SDLS---IFVGDLASDVTDTMLRDTFSSRYPSVKGAKVVIDSNTGRSKGYGFVRFDDESE 232
Query: 980 AEESIQQLNNTVIGKSTLRLSWGRTPANKQSRME 1081
++ ++N +R+ G K S M+
Sbjct: 233 RSRAMTEMNGIYCSSRAMRI--GVATPKKPSPMQ 264