BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00002970
         (1526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containin...   573   e-161
gb|ABC01900.1| RRM-containing RNA-binding protein-like protein [...   563   e-158
gb|ABB72821.1| RRM-containing RNA-binding protein-like protein [...   561   e-157
gb|ABO36623.1| putative RNA-binding protein [Solanum lycopersicum]    556   e-156
ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containin...   553   e-155

>ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like [Vitis
            vinifera]
          Length = 474

 Score =  573 bits (1477), Expect = e-161
 Identities = 277/327 (84%), Positives = 300/327 (91%), Gaps = 2/327 (0%)
 Frame = +1

Query: 277  RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFA 456
            RDAR+KK+E+CQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFA
Sbjct: 60   RDARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFA 119

Query: 457  EEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPY 636
            EEHDRRARAG+DYESS+GKVRPNDTILKLQRTTPYYKRNRAHVCSFY+RGECTRGAECPY
Sbjct: 120  EEHDRRARAGIDYESSFGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPY 179

Query: 637  RHEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGLDQRI 816
            RHEMP+TGELSQQNIKDRYYGVNDPVA+KLLNKAGEMPSLEPP+DESI+TLYVGGLD R+
Sbjct: 180  RHEMPITGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIKTLYVGGLDARV 239

Query: 817  SEQDLRDNFYAHGEIETIKMVLSRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 996
            +EQDLRD+FYAHGEIE+++MVL RACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG
Sbjct: 240  TEQDLRDHFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 299

Query: 997  RPQAAKPEFEVSDEARQ--AVTHSGLLPRAVISQQQNHVVQQPGFSDQPTAPMHYFNIXX 1170
            RPQA KPE E S+EARQ  A+ H G+LPRAVISQQQN V+Q PG  DQP  PMHYFNI  
Sbjct: 300  RPQAPKPEGESSEEARQQAALAHGGMLPRAVISQQQNQVIQPPGTQDQPPPPMHYFNIPP 359

Query: 1171 XXXXXXXGRQLYPSMDPQRMGAVIPSQ 1251
                    R  YPSMDPQRMGA++PSQ
Sbjct: 360  PPQQE---RTFYPSMDPQRMGALVPSQ 383



 Score = 87.8 bits (216), Expect = 7e-15
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +3

Query: 27  MAHRLLRDVEADGWERSDFPIICESCLGDNPYLRMTKADY 146
           MAHRLLRD+EADGWERSDFPIICESCLGDNPY+RMTKADY
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADY 40


>gb|ABC01900.1| RRM-containing RNA-binding protein-like protein [Solanum tuberosum]
          Length = 487

 Score =  563 bits (1450), Expect = e-158
 Identities = 280/327 (85%), Positives = 293/327 (89%), Gaps = 2/327 (0%)
 Frame = +1

Query: 277  RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFA 456
            RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFA
Sbjct: 60   RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFA 119

Query: 457  EEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPY 636
            EEHDRRARAG+DYESSYGKVR NDTILKLQRTTPYYKRNRAHVCSFYIRG+CTRG ECPY
Sbjct: 120  EEHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPY 179

Query: 637  RHEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGLDQRI 816
            RHEMP TGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGG+D RI
Sbjct: 180  RHEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGVDARI 239

Query: 817  SEQDLRDNFYAHGEIETIKMVLSRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 996
            SEQDLRD FYAHGEIE+IKMVL R CAFVTYTTREGA KAAEEL+NKLVIKGLRLKL+WG
Sbjct: 240  SEQDLRDQFYAHGEIESIKMVLQRGCAFVTYTTREGAVKAAEELANKLVIKGLRLKLLWG 299

Query: 997  RPQAAKPEFEVSDEARQ--AVTHSGLLPRAVISQQQNHVVQQPGFSDQPTAPMHYFNIXX 1170
            RPQA KP+ E+SDEARQ  AVTHSGLLPRAVISQQQN +   PG  +QP  PM YFNI  
Sbjct: 300  RPQAPKPDTELSDEARQQAAVTHSGLLPRAVISQQQNQLPPPPGTQEQPPQPMPYFNIPP 359

Query: 1171 XXXXXXXGRQLYPSMDPQRMGAVIPSQ 1251
                    R  YPSMDPQRMGA++ SQ
Sbjct: 360  MLQQE---RAYYPSMDPQRMGAIVSSQ 383



 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = +3

Query: 27  MAHRLLRDVEADGWERSDFPIICESCLGDNPYLRMTKADY 146
           MAHRLLRD EADGWERSDFPIICESCLGD+PY+RMTKADY
Sbjct: 1   MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADY 40


>gb|ABB72821.1| RRM-containing RNA-binding protein-like protein [Solanum tuberosum]
          Length = 462

 Score =  561 bits (1446), Expect = e-157
 Identities = 279/327 (85%), Positives = 292/327 (89%), Gaps = 2/327 (0%)
 Frame = +1

Query: 277  RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFA 456
            RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQ RDTALSINSND+IPKSDVNREYFA
Sbjct: 60   RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQFRDTALSINSNDAIPKSDVNREYFA 119

Query: 457  EEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPY 636
            EEHDRRARAG+DYESSYGKVR NDTILKLQRTTPYYKRNRAHVCSFYIRG+CTRG ECPY
Sbjct: 120  EEHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPY 179

Query: 637  RHEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGLDQRI 816
            RHEMP TGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGG+D RI
Sbjct: 180  RHEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGVDARI 239

Query: 817  SEQDLRDNFYAHGEIETIKMVLSRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 996
            SEQDLRD FYAHGEIE+IKMVL R CAFVTYTTREGA KAAEEL+NKLVIKGLRLKL+WG
Sbjct: 240  SEQDLRDQFYAHGEIESIKMVLQRGCAFVTYTTREGAVKAAEELANKLVIKGLRLKLLWG 299

Query: 997  RPQAAKPEFEVSDEARQ--AVTHSGLLPRAVISQQQNHVVQQPGFSDQPTAPMHYFNIXX 1170
            RPQA KP+ E+SDEARQ  AVTHSGLLPRAVISQQQN +   PG  +QP  PM YFNI  
Sbjct: 300  RPQAPKPDTELSDEARQQAAVTHSGLLPRAVISQQQNQLPPPPGTQEQPAQPMPYFNIPP 359

Query: 1171 XXXXXXXGRQLYPSMDPQRMGAVIPSQ 1251
                    R  YPSMDPQRMGA++ SQ
Sbjct: 360  MLQQE---RAYYPSMDPQRMGAIVSSQ 383



 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = +3

Query: 27  MAHRLLRDVEADGWERSDFPIICESCLGDNPYLRMTKADY 146
           MAHRLLRD EADGWERSDFPIICESCLGD+PY+RMTKADY
Sbjct: 1   MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADY 40


>gb|ABO36623.1| putative RNA-binding protein [Solanum lycopersicum]
          Length = 479

 Score =  556 bits (1433), Expect = e-156
 Identities = 278/327 (85%), Positives = 294/327 (89%), Gaps = 2/327 (0%)
 Frame = +1

Query: 277  RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFA 456
            RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFA
Sbjct: 60   RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFA 119

Query: 457  EEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPY 636
            EEHDRRARAG+DYESSYGKVR NDTI+KLQRTTPYYKRNRAHVCSFYIRG+CTRG ECPY
Sbjct: 120  EEHDRRARAGIDYESSYGKVRANDTIMKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPY 179

Query: 637  RHEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGLDQRI 816
            RHEMP TGELSQQNIKDRYYGVNDPVA+KLLNKAGEMPSLEPPDDESIRTLYVGG+D RI
Sbjct: 180  RHEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPDDESIRTLYVGGVDARI 239

Query: 817  SEQDLRDNFYAHGEIETIKMVLSRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 996
            +EQDLRD+FYAHGEIE+IKMV+ R CAFVTYTTREGA KAAEEL+NKLVIKGLRLKL+WG
Sbjct: 240  TEQDLRDHFYAHGEIESIKMVVQRGCAFVTYTTREGAVKAAEELANKLVIKGLRLKLLWG 299

Query: 997  RPQAAKPEFEVSDEARQ--AVTHSGLLPRAVISQQQNHVVQQPGFSDQPTAPMHYFNIXX 1170
            RPQ  KPE EVSDEARQ  A+THSGLLPRAV+SQQQN  +Q PG  DQP + M YFNI  
Sbjct: 300  RPQVPKPESEVSDEARQQAALTHSGLLPRAVVSQQQNQPLQPPGTQDQPPS-MPYFNI-- 356

Query: 1171 XXXXXXXGRQLYPSMDPQRMGAVIPSQ 1251
                    R  YPSMDPQRMGAVI SQ
Sbjct: 357  -PPMPQQDRPYYPSMDPQRMGAVIASQ 382



 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = +3

Query: 27  MAHRLLRDVEADGWERSDFPIICESCLGDNPYLRMTKADY 146
           MAHRLLRD EADGWERSDFPIICESCLGD+PY+RMTKADY
Sbjct: 1   MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADY 40


>ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
            [Cucumis sativus] gi|449525922|ref|XP_004169965.1|
            PREDICTED: zinc finger CCCH domain-containing protein
            40-like [Cucumis sativus]
          Length = 517

 Score =  553 bits (1425), Expect = e-155
 Identities = 276/323 (85%), Positives = 292/323 (90%), Gaps = 1/323 (0%)
 Frame = +1

Query: 277  RDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDSIPKSDVNREYFA 456
            RDARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND+IPKSDVNREYFA
Sbjct: 60   RDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFA 119

Query: 457  EEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPY 636
            EEHDR+ARAG+DYESSYGK RPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRG+ECPY
Sbjct: 120  EEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGSECPY 179

Query: 637  RHEMPVTGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVGGLDQRI 816
            RHEMP TGELSQQNIKDRYYGVNDPVA+KLLNKAGEMPSLEPP+DESIRTLYVGGLD R+
Sbjct: 180  RHEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVGGLDARV 239

Query: 817  SEQDLRDNFYAHGEIETIKMVLSRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWG 996
            SEQDLRDNFYAHGEIE+I+MVL RACAFVTYTTREGAEKAAEELSNKLVI+GLRLKLMWG
Sbjct: 240  SEQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWG 299

Query: 997  RPQAAKPEFEVSDEARQ-AVTHSGLLPRAVISQQQNHVVQQPGFSDQPTAPMHYFNIXXX 1173
            RPQA K E E SDEA+Q AV HSG+LPRAVISQQ N  +  PG  DQP A MHYFNI   
Sbjct: 300  RPQAPKAEIEGSDEAKQAAVAHSGMLPRAVISQQHNQ-LHPPGTHDQPQA-MHYFNIPPP 357

Query: 1174 XXXXXXGRQLYPSMDPQRMGAVI 1242
                   R  YPSMDPQRMGA++
Sbjct: 358  PPQQE--RAFYPSMDPQRMGALV 378



 Score = 87.8 bits (216), Expect = 7e-15
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +3

Query: 27  MAHRLLRDVEADGWERSDFPIICESCLGDNPYLRMTKADY 146
           MAHRLLRD+EADGWERSDFPIICESCLGDNPY+RMTKADY
Sbjct: 1   MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTKADY 40