BLASTX nr result

ID: Cnidium21_contig00002429 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00002429
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18062.1| unknown [Picea sitchensis]                             160   8e-38
ref|XP_004136028.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   158   4e-37
ref|XP_003557937.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   157   1e-36
emb|CBI36847.3| unnamed protein product [Vitis vinifera]              157   1e-36
ref|XP_002265998.1| PREDICTED: pre-mRNA-splicing factor SF2-like...   157   1e-36

>gb|ABR18062.1| unknown [Picea sitchensis]
          Length = 331

 Score =  160 bits (406), Expect = 8e-38
 Identities = 76/85 (89%), Positives = 81/85 (95%)
 Frame = -3

Query: 423 GGVSRRSDYRVMVSGLPSSASWQDLKDHMRRAGDVCFSQVFREGGGTTGIVDYTNYDDMK 244
           GGVSRRS+YRV+VSGLPSSASWQDLKDHMRRAGDVCFSQVFR+  GTTGIVDYTNYDDMK
Sbjct: 104 GGVSRRSEYRVLVSGLPSSASWQDLKDHMRRAGDVCFSQVFRDSSGTTGIVDYTNYDDMK 163

Query: 243 YAIRKLDESEFKNAFSRGVIRVKVY 169
           YAIRKLD+SEF+NAFSRG IRVK Y
Sbjct: 164 YAIRKLDDSEFRNAFSRGYIRVKEY 188


>ref|XP_004136028.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Cucumis sativus]
           gi|449498497|ref|XP_004160553.1| PREDICTED:
           pre-mRNA-splicing factor SF2-like [Cucumis sativus]
          Length = 309

 Score =  158 bits (400), Expect = 4e-37
 Identities = 73/85 (85%), Positives = 81/85 (95%)
 Frame = -3

Query: 420 GVSRRSDYRVMVSGLPSSASWQDLKDHMRRAGDVCFSQVFREGGGTTGIVDYTNYDDMKY 241
           GVSRRSDYRV+V+GLPSSASWQDLKDHMRRAGDVCFSQVFR+G GTTGIVDYTNYDDMKY
Sbjct: 104 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKY 163

Query: 240 AIRKLDESEFKNAFSRGVIRVKVYD 166
           AI+KLD+SEF+NAFSR  +RV+ YD
Sbjct: 164 AIKKLDDSEFRNAFSRAYVRVREYD 188


>ref|XP_003557937.1| PREDICTED: pre-mRNA-splicing factor SF2-like [Brachypodium
           distachyon]
          Length = 289

 Score =  157 bits (396), Expect = 1e-36
 Identities = 72/85 (84%), Positives = 81/85 (95%)
 Frame = -3

Query: 420 GVSRRSDYRVMVSGLPSSASWQDLKDHMRRAGDVCFSQVFREGGGTTGIVDYTNYDDMKY 241
           GVSR +DYRV+V+GLPSSASWQDLKDHMRRAGDVCFS+V+REG GTTGIVDYTNYDDMKY
Sbjct: 110 GVSRHTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGSGTTGIVDYTNYDDMKY 169

Query: 240 AIRKLDESEFKNAFSRGVIRVKVYD 166
           AI+KLD++EFKNAFS+G IRVK YD
Sbjct: 170 AIKKLDDTEFKNAFSKGYIRVKEYD 194


>emb|CBI36847.3| unnamed protein product [Vitis vinifera]
          Length = 264

 Score =  157 bits (396), Expect = 1e-36
 Identities = 72/86 (83%), Positives = 80/86 (93%)
 Frame = -3

Query: 423 GGVSRRSDYRVMVSGLPSSASWQDLKDHMRRAGDVCFSQVFREGGGTTGIVDYTNYDDMK 244
           GG SRRS+YRV+V+GLPSSASWQDLKDHMRRAGDVCFSQVF +GGGT GIVDYTNYDDMK
Sbjct: 103 GGASRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFHDGGGTVGIVDYTNYDDMK 162

Query: 243 YAIRKLDESEFKNAFSRGVIRVKVYD 166
           +AIRKLD+SEF+NAFSR  +RVK YD
Sbjct: 163 FAIRKLDDSEFRNAFSRAYVRVKEYD 188


>ref|XP_002265998.1| PREDICTED: pre-mRNA-splicing factor SF2-like isoform 1 [Vitis
           vinifera] gi|359480272|ref|XP_003632425.1| PREDICTED:
           pre-mRNA-splicing factor SF2-like isoform 2 [Vitis
           vinifera]
          Length = 296

 Score =  157 bits (396), Expect = 1e-36
 Identities = 72/86 (83%), Positives = 80/86 (93%)
 Frame = -3

Query: 423 GGVSRRSDYRVMVSGLPSSASWQDLKDHMRRAGDVCFSQVFREGGGTTGIVDYTNYDDMK 244
           GG SRRS+YRV+V+GLPSSASWQDLKDHMRRAGDVCFSQVF +GGGT GIVDYTNYDDMK
Sbjct: 103 GGASRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFHDGGGTVGIVDYTNYDDMK 162

Query: 243 YAIRKLDESEFKNAFSRGVIRVKVYD 166
           +AIRKLD+SEF+NAFSR  +RVK YD
Sbjct: 163 FAIRKLDDSEFRNAFSRAYVRVKEYD 188


Top