BLASTX nr result
ID: Cnidium21_contig00001997
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00001997
(4951 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2930 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2838 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2838 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2838 0.0
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 2815 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2930 bits (7597), Expect = 0.0
Identities = 1439/1535 (93%), Positives = 1498/1535 (97%)
Frame = -3
Query: 4736 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4557
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 4556 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4377
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEED+K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4376 FKQAQKIRNPKNRLRKILDSCKSKTKCDGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4197
FKQAQKIRNPKNRL+KILD+CK+K+KC+GGDEI++Q+ D+DEPVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 4196 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4017
EGMKMIAEYKIQ+KKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDC+LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 4016 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3837
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 3836 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3657
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3656 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3477
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3476 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3297
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3296 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3117
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3116 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2937
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2936 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 2757
L+R SAWH++ ETG ITPGDTQVRIEKGE++ GTLCKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2756 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAKNAVKELIRSAQDKDL 2577
RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETIS AKN VKELIR+AQ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2576 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2397
E EPGRTMMESFEN+VNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2396 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2217
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2216 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2037
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2036 LDSLKMKKNEFDKVFRYEIDDGHWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 1857
LDSLKMKK EFD+VF+YEIDD +WNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 1856 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1677
LGTEI TTGDN+WPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 1676 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 1497
GDDL+SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1496 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1317
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1316 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1137
P+VS +KE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1136 DPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 957
P+KISPWLLR++LNREMM+DKKLSMADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 956 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENNGFVT 777
NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K N+FDE+ GF
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 776 EPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 597
E EWMLDTEGVNLLAV+CHE+VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 596 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 417
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 416 LRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 237
LRGVTENIMLGQLAPIGTGDC+LYLN++MLQ AI++QLPSYMEGLDFGMTP+RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500
Query: 236 YHDGMMSPNYMLSPNLRLSPITDAQFSPYVGGMGF 132
YHDGMMSPNY+LSPNLRLSPITDAQFSPYVGGM F
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2838 bits (7358), Expect = 0.0
Identities = 1393/1535 (90%), Positives = 1470/1535 (95%)
Frame = -3
Query: 4736 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4557
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IE ETTERGKPKP GLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 4556 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4377
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEED+K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4376 FKQAQKIRNPKNRLRKILDSCKSKTKCDGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4197
FKQA KI+NPKNRL+KILD+CK+KTKC+GGD+ID SQDTDEPVKKSRGGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 4196 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4017
EGMKMIAEYK Q+KKNDD EQLPEPVERKQ L+AERVL VLKRISD+DC LLG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 4016 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3837
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL+KQE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 3836 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3657
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3656 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3477
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3476 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3297
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3296 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3117
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3116 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2937
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2936 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 2757
L+R +AWH+D E G ITPGDT VRIEKGE+++GT+CKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2756 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAKNAVKELIRSAQDKDL 2577
RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATMEKINETIS AKNAVKELIR AQ+K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2576 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2397
EP+PGRTMMESFEN+VNQVLN+ARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2396 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2217
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2216 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2037
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2036 LDSLKMKKNEFDKVFRYEIDDGHWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 1857
LDSLKMKK+EFD+VF+YE+DD +WNP+YM +H++DLK IRE R+VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 1856 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1677
LGTEI TTGD++WP+PVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 1676 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 1497
GDD +S+EAQKNATLFF ILLRST ASKRVL++YRLTREAFDWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1496 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1317
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 1316 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1137
P + +KE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 1136 DPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 957
P+KISPWLLR++LNREMM+DKKL+MADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 956 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENNGFVT 777
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQ K ++FDEN GF T
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 776 EPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 597
EWMLDTEGVNLLAV+C+E VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 596 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 417
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 416 LRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 237
LRGVTENIMLGQLAPIGTGDC+LYLN+ ML+ AI++QLPSYM+GLDFGMTPARSP+S TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500
Query: 236 YHDGMMSPNYMLSPNLRLSPITDAQFSPYVGGMGF 132
YHDGMMSP+Y+LSP+LRLSP TDAQFSPYV GM F
Sbjct: 1501 YHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2838 bits (7356), Expect = 0.0
Identities = 1390/1535 (90%), Positives = 1470/1535 (95%)
Frame = -3
Query: 4736 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4557
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK +GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4556 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4377
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4376 FKQAQKIRNPKNRLRKILDSCKSKTKCDGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4197
FKQA +I+NPKNRLRKILD+CK+KTKC+GGDEID Q QD+D+PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4196 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4017
EGMKM AEYK Q+KKNDDPEQLPEPVERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4016 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3837
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 3836 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3657
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3656 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3477
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3476 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3297
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3296 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3117
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3116 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2937
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2936 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 2757
L R SAWH++ ETGHITPGDT VRIEKGE+++GTLCKK LG STGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2756 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAKNAVKELIRSAQDKDL 2577
RKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETIS AKN VK LI+ AQ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2576 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2397
EPEPGRTMM+SFENKVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2396 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2217
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2216 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2037
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2036 LDSLKMKKNEFDKVFRYEIDDGHWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 1857
LDSLKMKK EF+++FRYE +D +W P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 1856 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1677
LGTEI TTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1676 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 1497
G+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1496 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1317
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1316 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1137
P + +KE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1136 DPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 957
P+KISPWLLR++LNREMM+DKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 956 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENNGFVT 777
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K N+FDEN GF
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 776 EPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 597
E EWMLDTEGVNLLAV+ HE+VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 596 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 417
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 416 LRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 237
LRGVTENIMLGQLAPIGTG C+LYLN++ML+ AI++QLPSY++GLDFGMTP+RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 236 YHDGMMSPNYMLSPNLRLSPITDAQFSPYVGGMGF 132
YH+GMMSPNY+LSPNLRLSPI+DAQFSPYVGGM F
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2838 bits (7356), Expect = 0.0
Identities = 1390/1535 (90%), Positives = 1470/1535 (95%)
Frame = -3
Query: 4736 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4557
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK +GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4556 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4377
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4376 FKQAQKIRNPKNRLRKILDSCKSKTKCDGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4197
FKQA +I+NPKNRLRKILD+CK+KTKC+GGDEID Q QD+D+PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4196 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4017
EGMKM AEYK Q+KKNDDPEQLPEPVERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4016 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3837
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 3836 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3657
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3656 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3477
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3476 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3297
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3296 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3117
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3116 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2937
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2936 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 2757
L R SAWH++ ETGHITPGDT VRIEKGE+++GTLCKK LG STGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2756 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAKNAVKELIRSAQDKDL 2577
RKFLGHTQWLVNYWLLQ FSIGIGDTIADAATMEKINETIS AKN VK LI+ AQ++ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2576 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2397
EPEPGRTMM+SFENKVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2396 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2217
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2216 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2037
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2036 LDSLKMKKNEFDKVFRYEIDDGHWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 1857
LDSLKMKK EF+++FRYE +D +W P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 1856 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1677
LGTEI TTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1676 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 1497
G+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1496 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1317
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1316 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1137
P + +KE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1136 DPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 957
P+KISPWLLR++LNREMM+DKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 956 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENNGFVT 777
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K N+FDEN GF
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 776 EPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 597
E EWMLDTEGVNLLAV+ HE+VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 596 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 417
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 416 LRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 237
LRGVTENIMLGQLAPIGTG C+LYLN++ML+ AI++QLPSY++GLDFGMTP+RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 236 YHDGMMSPNYMLSPNLRLSPITDAQFSPYVGGMGF 132
YH+GMMSPNY+LSPNLRLSPI+DAQFSPYVGGM F
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 2815 bits (7297), Expect = 0.0
Identities = 1380/1535 (89%), Positives = 1461/1535 (95%)
Frame = -3
Query: 4736 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4557
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK GLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 4556 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4377
DRK+KCETC A+MAECPGHFGHLELAKPMFHIGFLKTVL+IMRCVCFNCSKILADE D+K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 4376 FKQAQKIRNPKNRLRKILDSCKSKTKCDGGDEIDSQSQDTDEPVKKSRGGCGAQQPKITI 4197
FKQA +IRNPKNRL+KILD+CK+K+KC+GGDEID QDTDEPVKKSRGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 4196 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4017
EGMKMIAEYK Q+KK+DD EQLPEPVERKQ LSAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4016 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 3837
PDWMILQVL PSVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 3836 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3657
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3656 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3477
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3476 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3297
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3296 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3117
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3116 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 2937
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 2936 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 2757
L+R S+WH++ E G ITPGDT VRIEKGE++TGTLCKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2756 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISTAKNAVKELIRSAQDKDL 2577
RKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TME IN+TIS AK VK+LIR AQ+K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2576 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2397
E EPGRTMM+SFEN+VNQ LN+ARDDAG+SA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2396 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2217
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2216 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2037
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2036 LDSLKMKKNEFDKVFRYEIDDGHWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 1857
LDSLKMKK EFD+VFRYE DD +W P+YML E VEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 1856 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1677
L TEI TTGD++ P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1676 GDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPG 1497
G+DL+S EAQKNATL FNILLRSTFASKRVL+EYRL+REAF+WV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1496 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1317
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1316 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1137
+V +KE+AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 1136 DPDKISPWLLRVQLNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 957
+KISPWLLR++LNREMM+DKKLSMADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 956 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENNGFVT 777
NDEAPKGE+QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK K +FDEN GF
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 776 EPEWMLDTEGVNLLAVICHEEVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 597
EWMLDTEGVNLLAV+CHE+VDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 596 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 417
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 416 LRGVTENIMLGQLAPIGTGDCSLYLNEKMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 237
LRGVTENIMLGQLAPIGTG+C+LYLN++ML+ AI++QLPSYM+GLDFGMTPARSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 236 YHDGMMSPNYMLSPNLRLSPITDAQFSPYVGGMGF 132
YH+G+MSP+Y+LSPNLRLSP +DAQFSPYVGGM F
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535