BLASTX nr result
ID: Cnidium21_contig00001718
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00001718
(2698 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota] 700 0.0
dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum] 587 e-165
ref|XP_002301171.1| predicted protein [Populus trichocarpa] gi|2... 580 e-163
ref|XP_002510185.1| polyadenylate-binding protein, putative [Ric... 579 e-162
ref|XP_002327166.1| predicted protein [Populus trichocarpa] gi|2... 579 e-162
>gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 700 bits (1807), Expect = 0.0
Identities = 371/439 (84%), Positives = 377/439 (85%)
Frame = +3
Query: 300 SGSNGVSAGAALPNAGGSNQFTTTSLYVGDLDYSVTDSQLYDLFNQVGQVVSVRVCRDLS 479
SGSNGVSAGAA NAGGSNQFTTTSLYVGDLD SVTDSQLYDLFNQVGQVVSVRVCRDLS
Sbjct: 18 SGSNGVSAGAAA-NAGGSNQFTTTSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLS 76
Query: 480 TGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLD 659
TGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLD
Sbjct: 77 TGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLD 136
Query: 660 KSIDIKALHETFSSFGNIISCKIATDNSGQSKGYGFVQYDSEESAQTAIDKLNGMLMNDK 839
KSIDIKALHETFSSFG IISCKIATD SGQSKGYGFVQYDSEE+AQTAIDKLNGMLMNDK
Sbjct: 137 KSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDK 196
Query: 840 QVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSESTSEDDLRKTFGEYGTITSVVVMRDADG 1019
QVYVGVFLRKQDRDSEMSKTKFNNIYVKNLS+STSEDDLRKTFGEYGTITSVVVMRDADG
Sbjct: 197 QVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADG 256
Query: 1020 KSKCFGFVNFENPEDAARAVDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1199
KSKCFGFVNFENPEDAA+AVDAL
Sbjct: 257 KSKCFGFVNFENPEDAAKAVDAL-----------------NGKKFDDKEWYVGKAQKKSE 299
Query: 1200 REVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSG 1379
REVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFS++GTI+SCKVMRDPSG
Sbjct: 300 REVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSG 359
Query: 1380 ISRGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQXXXXXX 1559
ISRGSGFVAFSTPEEASRAL EMNGKMIVSKPLYVALAQRKEERRARLQAQFSQ
Sbjct: 360 ISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAM 419
Query: 1560 XXXXXXXXXXXXXGAPGMG 1616
GAPGMG
Sbjct: 420 PPSMGPRMPMYSPGAPGMG 438
Score = 211 bits (536), Expect = 1e-51
Identities = 107/119 (89%), Positives = 108/119 (90%)
Frame = +1
Query: 2005 GMLPVPYNMGGMLPRDAAMGQPMPITXXXXXXXXXXXDQQRTMLGENLYPLVDQLEHDHA 2184
GMLPVPYNMGGMLPR+AAMGQPMPIT DQQRTMLGENLYPLVDQLEHDHA
Sbjct: 540 GMLPVPYNMGGMLPREAAMGQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHA 599
Query: 2185 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS 2361
AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS
Sbjct: 600 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQLGGLSLNENLVS 658
>dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 587 bits (1512), Expect = e-165
Identities = 310/444 (69%), Positives = 347/444 (78%), Gaps = 5/444 (1%)
Frame = +3
Query: 300 SGSNGVSAGA-----ALPNAGGSNQFTTTSLYVGDLDYSVTDSQLYDLFNQVGQVVSVRV 464
+G NGV A A A+ GG T+TSLYVGDL+++VTDSQLYDLFNQVGQVVSVRV
Sbjct: 13 AGGNGVVAAAVGGAAAVATPGG---LTSTSLYVGDLEFNVTDSQLYDLFNQVGQVVSVRV 69
Query: 465 CRDLSTGRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIF 644
CRDLST RSLGYGYVNYSN DA+RA+++LNFTP+N K+IRV S RDPT RKSG+ NIF
Sbjct: 70 CRDLSTRRSLGYGYVNYSNPNDASRAMEMLNFTPVNGKSIRVMYSHRDPTLRKSGSANIF 129
Query: 645 IKNLDKSIDIKALHETFSSFGNIISCKIATDNSGQSKGYGFVQYDSEESAQTAIDKLNGM 824
IKNLDKSID KALH+TFSSFGNI+SCKIATD++GQSKGYGFVQYD+EESAQ AIDKLNGM
Sbjct: 130 IKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGM 189
Query: 825 LMNDKQVYVGVFLRKQDRDSEMSKTKFNNIYVKNLSESTSEDDLRKTFGEYGTITSVVVM 1004
LMNDKQVYVG FLRKQ+R+S TKF N+YVKNLSEST++D+L+K FGE+G ITS VVM
Sbjct: 190 LMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDDELKKVFGEFGNITSAVVM 249
Query: 1005 RDADGKSKCFGFVNFENPEDAARAVDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1184
RDADGKSKCFGF+NFE EDAA+AV++L
Sbjct: 250 RDADGKSKCFGFINFETAEDAAKAVESL-----------------NGKKFDDKEWYVGKA 292
Query: 1185 XXXXXREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSDFGTISSCKVM 1364
RE ELKS+FEQT KE VDKYQG+NLYVKNLDDTIDDEKLKELFS+FGTI+SCKVM
Sbjct: 293 QKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVM 352
Query: 1365 RDPSGISRGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQX 1544
RDPSGISRGSGFVAFST EEASRAL+EMNGKMIVSKPLYVALAQRKEERRA+LQAQFSQ
Sbjct: 353 RDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQL 412
Query: 1545 XXXXXXXXXXXXXXXXXXGAPGMG 1616
GAPG+G
Sbjct: 413 RPVAMPPSLAPRMPIYPPGAPGIG 436
Score = 179 bits (454), Expect = 3e-42
Identities = 93/120 (77%), Positives = 102/120 (85%), Gaps = 1/120 (0%)
Frame = +1
Query: 2005 GMLPVPYNMGGMLPRDAAMGQPMPITXXXXXXXXXXXDQQRTMLGENLYPLVDQLEHDHA 2184
GML VPY+MGGMLPRD+AMGQPMPI+ +QQRTMLGE+LYPLVDQLEH+HA
Sbjct: 538 GMLSVPYDMGGMLPRDSAMGQPMPISTLASALANAPPEQQRTMLGESLYPLVDQLEHEHA 597
Query: 2185 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQ-PNVADQLGGLSLNENLVS 2361
AKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLRNV Q N ADQL LSLN+NLVS
Sbjct: 598 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVQQTTNPADQLASLSLNDNLVS 657
>ref|XP_002301171.1| predicted protein [Populus trichocarpa] gi|222842897|gb|EEE80444.1|
predicted protein [Populus trichocarpa]
Length = 657
Score = 580 bits (1494), Expect = e-163
Identities = 304/438 (69%), Positives = 342/438 (78%)
Frame = +3
Query: 303 GSNGVSAGAALPNAGGSNQFTTTSLYVGDLDYSVTDSQLYDLFNQVGQVVSVRVCRDLST 482
G NGV+AG G+ QF TSLYVGDLD++VTDSQLYDLFNQVGQVVSVRVCRDLST
Sbjct: 15 GPNGVAAGP------GAIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLST 68
Query: 483 GRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDK 662
RSLGYGYVNYSN QDA RA+DVLNFTPLNNK +R+ S RDP+ RKSG NIFIKNLDK
Sbjct: 69 RRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPLRIMYSHRDPSIRKSGMANIFIKNLDK 128
Query: 663 SIDIKALHETFSSFGNIISCKIATDNSGQSKGYGFVQYDSEESAQTAIDKLNGMLMNDKQ 842
+ID KALH+TFSSFGNI+SCK+ATD SGQSKGYGFVQ+DSEE+AQ AIDKLNGML+NDKQ
Sbjct: 129 TIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQ 188
Query: 843 VYVGVFLRKQDRDSEMSKTKFNNIYVKNLSESTSEDDLRKTFGEYGTITSVVVMRDADGK 1022
VYVG FLRKQ+RDS +S KFNNIYVKNL+EST+++DL+ F E+G ITS VVMRDADGK
Sbjct: 189 VYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGK 248
Query: 1023 SKCFGFVNFENPEDAARAVDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 1202
SKCFGFVNFEN +DAA+AV+AL R
Sbjct: 249 SKCFGFVNFENVDDAAKAVEAL-----------------NGKKFDDKEWYVGKAQKKSER 291
Query: 1203 EVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSGI 1382
E+ELK RFEQ++ E V+KYQ VNLY+KNLDD+++DEKLKELFSDFGTI+SCKVM DPSGI
Sbjct: 292 ELELKGRFEQSL-ESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGI 350
Query: 1383 SRGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQXXXXXXX 1562
SRGSGFVAFSTPEEASRALAE+NGKM+VSKPLYVA AQRKEERRARLQAQFSQ
Sbjct: 351 SRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQRKEERRARLQAQFSQMRPVAMA 410
Query: 1563 XXXXXXXXXXXXGAPGMG 1616
GAPG+G
Sbjct: 411 PSVAPRMQMYPPGAPGLG 428
Score = 160 bits (405), Expect = 2e-36
Identities = 89/123 (72%), Positives = 94/123 (76%), Gaps = 4/123 (3%)
Frame = +1
Query: 2005 GMLPVPYNMGGMLPRDAAMGQPMPITXXXXXXXXXXXDQQRTMLGENLYPLVDQLEHDHA 2184
GML VPY+MG M RDAA GQPMPIT +QQRTMLGE LYPLVDQLEHD A
Sbjct: 529 GMLSVPYDMGVMPIRDAAGGQPMPITALATALANATPEQQRTMLGEGLYPLVDQLEHDSA 588
Query: 2185 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQP----NVADQLGGLSLNEN 2352
AKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLR V+ N AD L LSLNEN
Sbjct: 589 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNPADHLASLSLNEN 648
Query: 2353 LVS 2361
LVS
Sbjct: 649 LVS 651
>ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding
protein, putative [Ricinus communis]
Length = 658
Score = 579 bits (1492), Expect = e-162
Identities = 301/438 (68%), Positives = 342/438 (78%)
Frame = +3
Query: 303 GSNGVSAGAALPNAGGSNQFTTTSLYVGDLDYSVTDSQLYDLFNQVGQVVSVRVCRDLST 482
G+NG +A A GS + TSLYVGDLD +VTDSQLYD+FNQVGQVVSVRVCRDL+T
Sbjct: 19 GANGAAAAAG----SGSVPYMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTT 74
Query: 483 GRSLGYGYVNYSNQQDATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDK 662
RSLGYGYVNY++ QDA RA+D+LNFTP NNK IR+ S RDP+ RKSG GNIFIKNLDK
Sbjct: 75 RRSLGYGYVNYTSPQDAARALDILNFTPFNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDK 134
Query: 663 SIDIKALHETFSSFGNIISCKIATDNSGQSKGYGFVQYDSEESAQTAIDKLNGMLMNDKQ 842
+ID KALH+TFSSFGNI+SCK+ATD+SGQS+GYGFVQ+D+EE+AQ AIDKLNGML+NDKQ
Sbjct: 135 TIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQ 194
Query: 843 VYVGVFLRKQDRDSEMSKTKFNNIYVKNLSESTSEDDLRKTFGEYGTITSVVVMRDADGK 1022
VYVG FLRK +RDS +K KFNN+YVKNLSEST+E+DL+ FGEYG ITS V+MRDADGK
Sbjct: 195 VYVGHFLRKHERDSASNK-KFNNVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGK 253
Query: 1023 SKCFGFVNFENPEDAARAVDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 1202
SKCFGFVNFEN + AA+AV++L R
Sbjct: 254 SKCFGFVNFENTDAAAKAVESL-----------------NGKKIDDKEWYVGKAQKKSER 296
Query: 1203 EVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSGI 1382
E+ELKS+FEQ++KE VDKYQGVNLY+KNLDD+I DE LKELFSDFG I+SCKVMRDPSGI
Sbjct: 297 ELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDPSGI 356
Query: 1383 SRGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQXXXXXXX 1562
SRGSGFVAFSTPEEASRALAEMNGKM+VSKPLYVALAQRKEERRARLQAQFSQ
Sbjct: 357 SRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMA 416
Query: 1563 XXXXXXXXXXXXGAPGMG 1616
GAPGMG
Sbjct: 417 PSVGPRMPIYSPGAPGMG 434
Score = 157 bits (398), Expect = 1e-35
Identities = 85/123 (69%), Positives = 96/123 (78%), Gaps = 4/123 (3%)
Frame = +1
Query: 2005 GMLPVPYNMGGMLPRDAAMGQPMPITXXXXXXXXXXXDQQRTMLGENLYPLVDQLEHDHA 2184
GML VPY+MGGM RDAA GQP+PIT + QRT+LGE+LYPLVDQLEH+ A
Sbjct: 536 GMLSVPYDMGGMPIRDAAAGQPVPITALATALANASPEHQRTLLGESLYPLVDQLEHESA 595
Query: 2185 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQP----NVADQLGGLSLNEN 2352
AKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLR+V+ N ADQL LSLN+
Sbjct: 596 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAAQQHANNTADQLTSLSLNDG 655
Query: 2353 LVS 2361
LVS
Sbjct: 656 LVS 658
>ref|XP_002327166.1| predicted protein [Populus trichocarpa] gi|222835481|gb|EEE73916.1|
predicted protein [Populus trichocarpa]
Length = 632
Score = 579 bits (1492), Expect = e-162
Identities = 297/423 (70%), Positives = 335/423 (79%)
Frame = +3
Query: 348 GSNQFTTTSLYVGDLDYSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQ 527
G+ QF TSLYVGDLD++VTDSQLYD+FNQVGQVVSVRVCRDLST RSLGYGYVNYSN Q
Sbjct: 5 GAIQFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQ 64
Query: 528 DATRAIDVLNFTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLDKSIDIKALHETFSSFG 707
DA RA+DVLNFTPLNNK IR+ S RDP+ RKSG NIFIKNLDK ID KALH+TFSSFG
Sbjct: 65 DAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFG 124
Query: 708 NIISCKIATDNSGQSKGYGFVQYDSEESAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSE 887
NI+SCK+ATD SGQSKGYGFVQ+DSEE+AQ AIDKLNGML+NDKQVYVG FLRKQDRD
Sbjct: 125 NILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGA 184
Query: 888 MSKTKFNNIYVKNLSESTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDA 1067
+ KFNN++VKNL+EST++++L+ F E+G ITS VVMRDADGKSKCFGFVNFE+ +DA
Sbjct: 185 LYSIKFNNVFVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDA 244
Query: 1068 ARAVDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVELKSRFEQTVKEQ 1247
A+AV+AL RE+ELK RFEQ++KE
Sbjct: 245 AKAVEAL-----------------NGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKET 287
Query: 1248 VDKYQGVNLYVKNLDDTIDDEKLKELFSDFGTISSCKVMRDPSGISRGSGFVAFSTPEEA 1427
VDK+QG+NLY+KNLDD+I+DEKLKELFSDFG I+SCKVMRDPSGISRGSGFVAFSTPEEA
Sbjct: 288 VDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEA 347
Query: 1428 SRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQXXXXXXXXXXXXXXXXXXXGAP 1607
SRALAEMNGKM++SKPLYVALAQRKEERRARLQAQFSQ GAP
Sbjct: 348 SRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFSQMRPVTMAPSVASRMPMYPPGAP 407
Query: 1608 GMG 1616
GMG
Sbjct: 408 GMG 410
Score = 160 bits (405), Expect = 2e-36
Identities = 89/123 (72%), Positives = 97/123 (78%), Gaps = 4/123 (3%)
Frame = +1
Query: 2005 GMLPVPYNMGGMLPRDAAMGQPMPITXXXXXXXXXXXDQQRTMLGENLYPLVDQLEHDHA 2184
GML VPY+MGGM RDAA QPMPIT +QQRTMLGE+LYP+VDQLEHD A
Sbjct: 512 GMLSVPYDMGGMPIRDAA--QPMPITALATALANATPEQQRTMLGESLYPIVDQLEHDSA 569
Query: 2185 AKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQP----NVADQLGGLSLNEN 2352
AKVTGMLLEMDQTEVLHLLESP+ALKAKVAEAM+VLR V+ N ADQLG LSLN+N
Sbjct: 570 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAAQQQINNQADQLGSLSLNDN 629
Query: 2353 LVS 2361
LVS
Sbjct: 630 LVS 632