BLASTX nr result
ID: Cnidium21_contig00001657
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00001657
(1996 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28010.3| unnamed protein product [Vitis vinifera] 527 e-147
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 527 e-147
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 484 e-134
ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arab... 483 e-133
ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arab... 465 e-128
>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 527 bits (1357), Expect = e-147
Identities = 277/533 (51%), Positives = 365/533 (68%), Gaps = 2/533 (0%)
Frame = -2
Query: 1995 CRLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTEHSFNSLEVVAISHKPKR 1816
CRLFNNG AVKGTLL+NRKL TIQIR SMIKVE D L + NS+E+ S++P+R
Sbjct: 393 CRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRR 452
Query: 1815 CTLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWKDRDNVDLMRR 1636
LSK LIALLS+GGVP ++F+N+L+ ALE+ + + AAL+ ++ + D+ ++ R
Sbjct: 453 SYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDD-SIVTR 511
Query: 1635 LLLSGIALDEPCLHNSLTHLASEAKKRLQRGKLPISESYYLMGTADPTGLLENDQVCVIL 1456
++LSGI +DEP LH+ L+ + +E +K L+ GKLP+++ +YLMGTADPTG L++D+VC+IL
Sbjct: 512 MILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIIL 571
Query: 1455 GGGQVTGDVLVYRNPGLHFGDIHVLKATYLESISDVVGNAKYAIFFSVKGQRSMANEIGD 1276
GQV G VLVY++PGLHFGDIHVL ATY+E++ + VGNAKYAIFF +KG RS+A+E+ +
Sbjct: 572 DHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMAN 631
Query: 1275 GDLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKVSDFSSEQLEQALMQQYLIIR 1096
D DGDMYWVS+N +LL YF+AS PW R H + +DFS ++LE L Q +L R
Sbjct: 632 SDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTR 691
Query: 1095 NQ-SSNIAAAADSWLAFMDRLLILGHNNPCETEHMKKTMLHLIDIYYNALDAAKSGKKVE 919
Q SS I AAD+WL FMDRLL L + E E +K+ ML L DIYY+ALDA KSG KV
Sbjct: 692 FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 751
Query: 918 FPKELKAELFPHHMERTNIYASTSILGLIYDAVQPRQTQTASVEDIWKRRNFKEAKVPHE 739
KELKAE FPH M R + Y STSILG IYDAV+ Q + S ++IW+ F VP
Sbjct: 752 VSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQA 811
Query: 738 CLMLWKERYNDYRKELCNAMK-SDEFKSASIDIIIQQYKQMLYGAKELEQSKRKMNDIYV 562
CL WK+RY+ YR E+ A++ E K +I +YKQ+LYGA E E+S R + DI+
Sbjct: 812 CLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFD 871
Query: 561 DALAIHHVVYDYANSVQDAGKCLFAWKVAGDALCKFYARKET*ELSVFSPSVL 403
+ALAI+HV Y++ + C F W+VAG ALCK Y K + V PSVL
Sbjct: 872 EALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVL 924
>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 527 bits (1357), Expect = e-147
Identities = 277/533 (51%), Positives = 365/533 (68%), Gaps = 2/533 (0%)
Frame = -2
Query: 1995 CRLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTEHSFNSLEVVAISHKPKR 1816
CRLFNNG AVKGTLL+NRKL TIQIR SMIKVE D L + NS+E+ S++P+R
Sbjct: 407 CRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRR 466
Query: 1815 CTLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWKDRDNVDLMRR 1636
LSK LIALLS+GGVP ++F+N+L+ ALE+ + + AAL+ ++ + D+ ++ R
Sbjct: 467 SYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDD-SIVTR 525
Query: 1635 LLLSGIALDEPCLHNSLTHLASEAKKRLQRGKLPISESYYLMGTADPTGLLENDQVCVIL 1456
++LSGI +DEP LH+ L+ + +E +K L+ GKLP+++ +YLMGTADPTG L++D+VC+IL
Sbjct: 526 MILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIIL 585
Query: 1455 GGGQVTGDVLVYRNPGLHFGDIHVLKATYLESISDVVGNAKYAIFFSVKGQRSMANEIGD 1276
GQV G VLVY++PGLHFGDIHVL ATY+E++ + VGNAKYAIFF +KG RS+A+E+ +
Sbjct: 586 DHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMAN 645
Query: 1275 GDLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKVSDFSSEQLEQALMQQYLIIR 1096
D DGDMYWVS+N +LL YF+AS PW R H + +DFS ++LE L Q +L R
Sbjct: 646 SDFDGDMYWVSRNQQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTR 705
Query: 1095 NQ-SSNIAAAADSWLAFMDRLLILGHNNPCETEHMKKTMLHLIDIYYNALDAAKSGKKVE 919
Q SS I AAD+WL FMDRLL L + E E +K+ ML L DIYY+ALDA KSG KV
Sbjct: 706 FQTSSAIGMAADNWLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVN 765
Query: 918 FPKELKAELFPHHMERTNIYASTSILGLIYDAVQPRQTQTASVEDIWKRRNFKEAKVPHE 739
KELKAE FPH M R + Y STSILG IYDAV+ Q + S ++IW+ F VP
Sbjct: 766 VSKELKAEKFPHFMGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQA 825
Query: 738 CLMLWKERYNDYRKELCNAMK-SDEFKSASIDIIIQQYKQMLYGAKELEQSKRKMNDIYV 562
CL WK+RY+ YR E+ A++ E K +I +YKQ+LYGA E E+S R + DI+
Sbjct: 826 CLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFD 885
Query: 561 DALAIHHVVYDYANSVQDAGKCLFAWKVAGDALCKFYARKET*ELSVFSPSVL 403
+ALAI+HV Y++ + C F W+VAG ALCK Y K + V PSVL
Sbjct: 886 EALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLGEKSMVCVPSVL 938
>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
RNA polymerase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 981
Score = 484 bits (1246), Expect = e-134
Identities = 263/534 (49%), Positives = 354/534 (66%), Gaps = 4/534 (0%)
Frame = -2
Query: 1992 RLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTEHSFNSLEVVAISHKPKRC 1813
R+F +G AVKGT L+N+KL T+Q+R SMIKV D +L +FN+LEVV S+ P+R
Sbjct: 447 RMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRT 506
Query: 1812 TLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWKDRDNVDLMRRL 1633
LSKNL+ALLS+GG+P +FFL+IL LEE++ I ++ AAL + + D+ + + +
Sbjct: 507 KLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMI 566
Query: 1632 LLSGIALDEPCLHNSLTHLASEAKKRLQRGKLPISESYYLMGTADPTGLLENDQVCVILG 1453
L+ GI LDEP L N L+ L K L+ G+LP++ESYYLMGT DPTG L+ D+VCVIL
Sbjct: 567 LV-GIPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILE 625
Query: 1452 GGQVTGDVLVYRNPGLHFGDIHVLKATYLESISDVVGNAKYAIFFSVKGQRSMANEIGDG 1273
GQ++G+VLVYRNPGLHFGDIH+LKATY++++ + VGN+KYA+FF KG RS+ +EI G
Sbjct: 626 SGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGG 685
Query: 1272 DLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKV-SDFSSEQLEQALMQQYLIIR 1096
D DGDMY++S+NP+LL +F+ S PW P + S S E+LE+ L + +L
Sbjct: 686 DFDGDMYFISRNPELLEHFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLKAG 745
Query: 1095 NQSSN-IAAAADSWLAFMDRLLILGHNNPCETEHMKKTMLHLIDIYYNALDAAKSGKKVE 919
+SN I AADSWL MDRLLILG E MKK ML LIDIYY+ALDA K G KV
Sbjct: 746 FHASNVIGIAADSWLTIMDRLLILGDERAEEKAEMKKKMLKLIDIYYDALDAPKKGDKVY 805
Query: 918 FPKELKAELFPHHMERTNIYASTSILGLIYDAVQPRQTQTAS-VEDIWKRRNFKEAKVPH 742
P EL+ ++FPH+MER + STSILGLIYD V+ + T+ + +I K F++ V
Sbjct: 806 LPNELRPDIFPHYMEREKKFKSTSILGLIYDFVKSQTTEEPTPSSEISKLPCFEDEPVSE 865
Query: 741 ECLMLWKERYNDYRKELCNAMKSDEFKSASIDIIIQQYKQMLYGAKELEQSKRKMNDIYV 562
+ + Y++YR E+ AMK+D K S + +IQ+YKQ YGA E SK+ + ++Y
Sbjct: 866 FHMEKCRRWYDNYRSEMTQAMKTD--KDESANEVIQRYKQEFYGAAGFEDSKKSLEELYP 923
Query: 561 DALAIHHVVYDYANSVQDAGKCLFAWKVAGDALCKFYARKET*ELS-VFSPSVL 403
AL ++ +VYDYA KC F WKVAG LC+FY K+ E S V +PSVL
Sbjct: 924 QALTLYKIVYDYAIHA-GVSKCGFVWKVAGPVLCRFYLMKKMQEKSLVCAPSVL 976
>ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5 gi|330251850|gb|AEC06944.1| RNA-dependent RNA
polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 483 bits (1242), Expect = e-133
Identities = 263/534 (49%), Positives = 353/534 (66%), Gaps = 4/534 (0%)
Frame = -2
Query: 1992 RLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTEHSFNSLEVVAISHKPKRC 1813
R+F +G AVKGT L+N+KL T+Q+R SMIKV D +L +FN+LEVV S+ PKR
Sbjct: 443 RMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRT 502
Query: 1812 TLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWKDRDNVDLMRRL 1633
LSKNL+ALLS+GG+P +FFL+IL LEE++ I ++ AAL + + D+ + + +
Sbjct: 503 KLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMI 562
Query: 1632 LLSGIALDEPCLHNSLTHLASEAKKRLQRGKLPISESYYLMGTADPTGLLENDQVCVILG 1453
L+ GI LDEP L N L+ L K L+ GKLP++ESYYLMGT DPTG L+ D+VCVIL
Sbjct: 563 LV-GIPLDEPHLKNYLSILLKTEKNDLKAGKLPVTESYYLMGTVDPTGALKEDEVCVILE 621
Query: 1452 GGQVTGDVLVYRNPGLHFGDIHVLKATYLESISDVVGNAKYAIFFSVKGQRSMANEIGDG 1273
GQ++G+VLVYRNPGLHFGDIH+LKATY++++ + VGN+K+A+FF KG RS+ +EI G
Sbjct: 622 SGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGG 681
Query: 1272 DLDGDMYWVSQNPKLLGYFQASPPWKRTYPVPHGLQSKV-SDFSSEQLEQALMQQYLIIR 1096
D DGDMY++S+NP+LL F+ S PW P + S S E+LE+ L + +L
Sbjct: 682 DFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAG 741
Query: 1095 NQSSN-IAAAADSWLAFMDRLLILGHNNPCETEHMKKTMLHLIDIYYNALDAAKSGKKVE 919
+SN I AADSWL MDR LILG + E MKK ML LIDIYY+ALDA K G KV
Sbjct: 742 FHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVY 801
Query: 918 FPKELKAELFPHHMERTNIYASTSILGLIYDAVQPRQTQTAS-VEDIWKRRNFKEAKVPH 742
P +LK ++FPH+MER + STSILGLI+D V+ + T+ S +I K F++ V
Sbjct: 802 LPNKLKPDIFPHYMERDKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSE 861
Query: 741 ECLMLWKERYNDYRKELCNAMKSDEFKSASIDIIIQQYKQMLYGAKELEQSKRKMNDIYV 562
+ + Y++YR E+ AMK+D K S + +IQ+YKQ YGA E SK+ + ++Y
Sbjct: 862 FHMQKCRLWYDNYRTEMTQAMKTD--KDESANEVIQRYKQEFYGAAGFEDSKKSLEELYP 919
Query: 561 DALAIHHVVYDYANSVQDAGKCLFAWKVAGDALCKFYARKET*E-LSVFSPSVL 403
ALA++ +VYDYA KC F WKVAG LC+FY K+ E V +PSVL
Sbjct: 920 QALALYKIVYDYAIHA-GVSKCRFVWKVAGPVLCRFYLNKKMQEKCLVCAPSVL 972
>ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3 gi|330251848|gb|AEC06942.1| RNA-dependent RNA
polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 465 bits (1196), Expect = e-128
Identities = 257/538 (47%), Positives = 341/538 (63%), Gaps = 6/538 (1%)
Frame = -2
Query: 1992 RLFNNGLAVKGTLLVNRKLKSGTIQIRRSMIKVEADSTLPTEHSFNSLEVVAISHKPKRC 1813
R+F NG AVKGT L N+KL T+Q+R SMIKV D TL +FNSLEVV S+ P++
Sbjct: 456 RIFYNGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKA 515
Query: 1812 TLSKNLIALLSFGGVPKDFFLNILEKALEETRIILLDRSAALQFLKKWKDRDNVDLMRRL 1633
LS+NL+ALLS+GGVP DFFLNIL LEE++ I AA + + D M
Sbjct: 516 RLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYTADM--- 572
Query: 1632 LLSGIALDEPCLHNSLTHLASEAKKRLQRGKLPISESYYLMGTADPTGLLENDQVCVILG 1453
+L GI LDEP L + L++L + L+ G+ PI ESYY+MGT DPTG L+ +++CVIL
Sbjct: 573 ILVGIPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILH 632
Query: 1452 GGQVTGDVLVYRNPGLHFGDIHVLKATYLESISDVVGNAKYAIFFSVKGQRSMANEIGDG 1273
GQ++GDVLVYRNPGLHFGDIHVLKATY++++ D VGNAK+A+FF KG RS+ +EI G
Sbjct: 633 SGQISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGG 692
Query: 1272 DLDGDMYWVSQNPKLLGYFQASPPW-KRTYPVPHGLQSKVSDFSSEQLEQALMQQYLIIR 1096
D DGDMY++S+NPKLL +F+ S PW + P K S+ S E+LE+ L + +L R
Sbjct: 693 DFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKAR 752
Query: 1095 -NQSSNIAAAADSWLAFMDRLLILGHNNPCETEHMKKTMLHLIDIYYNALDAAKSGKKVE 919
+ I AAD WL MD L LG + E KK +L LIDIYY+ALDA K G KV+
Sbjct: 753 FCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVD 812
Query: 918 FPKELKAELFPHHMER--TNIYASTSILGLIYDAVQPRQTQTASVEDIWKRRNFKEAKVP 745
P +L+ + FPH+MER + STSILGLI+D V + +I K F++ VP
Sbjct: 813 LPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPSEISKLWYFEDEPVP 872
Query: 744 HECLMLWKERYNDYRKELCNA-MKSDEFKSASI-DIIIQQYKQMLYGAKELEQSKRKMND 571
+ + Y +YR E+ A M++D+ K + + +IQ+YKQ YGA E S + + +
Sbjct: 873 KSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFYGAAGFEDSNKSLEE 932
Query: 570 IYVDALAIHHVVYDYANSVQDAGKCLFAWKVAGDALCKFYARKET*ELSVFSPSVLPK 397
+Y ALA+++VVYDYA + KC FAW VAG LCKFY +K + V S SVL K
Sbjct: 933 LYPQALALYNVVYDYAIQ-EGVAKCTFAWNVAGPVLCKFYLKKTKDKSVVASTSVLKK 989