BLASTX nr result
ID: Cnidium21_contig00001631
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cnidium21_contig00001631 (573 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera] 227 9e-58 ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription f... 213 2e-53 ref|XP_004134713.1| PREDICTED: general transcription factor IIH ... 213 2e-53 ref|NP_974564.1| transcription initiation factor TFIIH subunit H... 212 3e-53 dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana] 212 3e-53 >emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera] Length = 451 Score = 227 bits (579), Expect = 9e-58 Identities = 114/148 (77%), Positives = 126/148 (85%), Gaps = 2/148 (1%) Frame = -1 Query: 438 MPQVRIIAKNFMDMVASLPATKLDNLYHNVFICEAILRSLPPLAKKYVLQMLYIFDAINA 259 MPQV+IIAKNFMDMVASLPA KLD LYHN FICEAILRSLPPLAKKY+LQMLYI + A Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYIDVPVTA 60 Query: 258 KLMEEWVPVEGMSKHRVAIDKLVQLRIFTETVDRKRETSYRLNSTFQKNLQNHIIHGGVL 79 K MEEWV +G SKHRVAID+L+QLR+FTET DRK+ETSYRLN TFQ NLQ H+I+GGVL Sbjct: 61 KAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGVL 120 Query: 78 PREPM--QISVRLPSSVDLDAYASEQWE 1 PREPM I+VRLPS DL+AYA QWE Sbjct: 121 PREPMPSNITVRLPSLDDLEAYALGQWE 148 >ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like, partial [Cucumis sativus] Length = 296 Score = 213 bits (541), Expect = 2e-53 Identities = 107/148 (72%), Positives = 124/148 (83%), Gaps = 2/148 (1%) Frame = -1 Query: 438 MPQVRIIAKNFMDMVASLPATKLDNLYHNVFICEAILRSLPPLAKKYVLQMLYIFDAINA 259 MPQV+IIAKNFMDMVASLPA KLD LY N FICEAILRSLPPLAKK+VLQMLYI ++A Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60 Query: 258 KLMEEWVPVEGMSKHRVAIDKLVQLRIFTETVDRKRETSYRLNSTFQKNLQNHIIHGGVL 79 K MEEWV +G+SK++VA+D+L+QLR+F ET DRKRET+YRLN TFQ NLQ +IHG VL Sbjct: 61 KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120 Query: 78 PREPM--QISVRLPSSVDLDAYASEQWE 1 REPM I+VRLPS DL+AYA +QWE Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWE 148 >ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis sativus] Length = 451 Score = 213 bits (541), Expect = 2e-53 Identities = 107/148 (72%), Positives = 124/148 (83%), Gaps = 2/148 (1%) Frame = -1 Query: 438 MPQVRIIAKNFMDMVASLPATKLDNLYHNVFICEAILRSLPPLAKKYVLQMLYIFDAINA 259 MPQV+IIAKNFMDMVASLPA KLD LY N FICEAILRSLPPLAKK+VLQMLYI ++A Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYIDGPVSA 60 Query: 258 KLMEEWVPVEGMSKHRVAIDKLVQLRIFTETVDRKRETSYRLNSTFQKNLQNHIIHGGVL 79 K MEEWV +G+SK++VA+D+L+QLR+F ET DRKRET+YRLN TFQ NLQ +IHG VL Sbjct: 61 KSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEVL 120 Query: 78 PREPM--QISVRLPSSVDLDAYASEQWE 1 REPM I+VRLPS DL+AYA +QWE Sbjct: 121 AREPMPSNITVRLPSLEDLEAYALDQWE 148 >ref|NP_974564.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis thaliana] gi|332658438|gb|AEE83838.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis thaliana] Length = 462 Score = 212 bits (540), Expect = 3e-53 Identities = 108/148 (72%), Positives = 122/148 (82%), Gaps = 2/148 (1%) Frame = -1 Query: 438 MPQVRIIAKNFMDMVASLPATKLDNLYHNVFICEAILRSLPPLAKKYVLQMLYIFDAINA 259 MPQV+IIAKNFMDMVASLPA KLD LY+NVFICEAILRSLPPLAKKYVLQMLYI + A Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60 Query: 258 KLMEEWVPVEGMSKHRVAIDKLVQLRIFTETVDRKRETSYRLNSTFQKNLQNHIIHGGVL 79 +MEEWV +G SKHRVAID+L+QLRIF+E DRKR TSY LN TFQ NLQ HII GGVL Sbjct: 61 TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120 Query: 78 PREPMQI--SVRLPSSVDLDAYASEQWE 1 PREPM +++LPS +L+ YA +QWE Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWE 148 >dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana] Length = 452 Score = 212 bits (540), Expect = 3e-53 Identities = 108/148 (72%), Positives = 122/148 (82%), Gaps = 2/148 (1%) Frame = -1 Query: 438 MPQVRIIAKNFMDMVASLPATKLDNLYHNVFICEAILRSLPPLAKKYVLQMLYIFDAINA 259 MPQV+IIAKNFMDMVASLPA KLD LY+NVFICEAILRSLPPLAKKYVLQMLYI + A Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA 60 Query: 258 KLMEEWVPVEGMSKHRVAIDKLVQLRIFTETVDRKRETSYRLNSTFQKNLQNHIIHGGVL 79 +MEEWV +G SKHRVAID+L+QLRIF+E DRKR TSY LN TFQ NLQ HII GGVL Sbjct: 61 TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL 120 Query: 78 PREPMQI--SVRLPSSVDLDAYASEQWE 1 PREPM +++LPS +L+ YA +QWE Sbjct: 121 PREPMNSDNAIKLPSLQELETYALKQWE 148