BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001545
         (1235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACD56611.1| putative photosystem II protein [Gossypioides kir...   315   2e-83
ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, ch...   310   4e-82
ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast p...   306   7e-81
gb|AFK43146.1| unknown [Lotus japonicus]                              304   3e-80
gb|ABO41835.1| putative photosystem II protein [Gossypium raimon...   304   3e-80

>gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]
          Length = 277

 Score =  315 bits (806), Expect = 2e-83
 Identities = 183/279 (65%), Positives = 195/279 (69%), Gaps = 7/279 (2%)
 Frame = +2

Query: 185  MAQTMLLMSSSTCVSGHAADNLKTPALPLL----QRLKPKSFSHSLLPHLSNI--SKSSS 346
            MAQTML+MSS++  + H   NLK    PLL    Q LKPK FSH L   LSN   + SS 
Sbjct: 1    MAQTMLVMSSTSVSASHVV-NLKRDH-PLLHFQAQGLKPKPFSHFLFNPLSNAVAASSSK 58

Query: 347  TFTTYALFKSKTXXXXXXXXXXXXXX-EDXXXXXXXXXXXXKQNELFVGRVAMIGFAASL 523
             FTT+ALFKSKT               ED            KQNELFVGRVAMIGFAASL
Sbjct: 59   AFTTFALFKSKTKAAPKKAEPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 118

Query: 524  LGEALTGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDPPTGLEK 703
            LGEA+TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGRFVD+PPTG+E 
Sbjct: 119  LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPPTGVEG 178

Query: 704  AVIKPGKGFRAALGLSEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 883
            AVI PGKG R ALGL EGGPLFGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNI
Sbjct: 179  AVIPPGKGVRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 238

Query: 884  ETGIPINDIEPXXXXXXXXXXXXXXXPGTGKFITDEEED 1000
            ETGIPI+DIEP               PGTGKF+TDEEED
Sbjct: 239  ETGIPISDIEPLVLFNVAFFFAAAINPGTGKFVTDEEED 277


>ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis
            vinifera] gi|302141814|emb|CBI19017.3| unnamed protein
            product [Vitis vinifera]
          Length = 270

 Score =  310 bits (795), Expect = 4e-82
 Identities = 178/275 (64%), Positives = 195/275 (70%), Gaps = 3/275 (1%)
 Frame = +2

Query: 185  MAQTMLLMSSSTCVSGHAADNLKTPALPLLQRLKPKSFSHSLLPHLSNISKSSS-TFTTY 361
            MAQTML+  S   VSGH+  +LK    PLLQRL+PK FSH LLP L   S +SS  FTT 
Sbjct: 1    MAQTMLITPS---VSGHSVLDLKRQ--PLLQRLRPKPFSHLLLPPLPTSSSTSSPAFTTL 55

Query: 362  ALFKSKTXXXXXXXXXXXXXX-EDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEAL 538
            ALFKSKT               ED            K+NELFVGRVAM+GFAASLLGEA+
Sbjct: 56   ALFKSKTKAAPSKKVTKPKPQVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASLLGEAI 115

Query: 539  TGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDD-PPTGLEKAVIK 715
            TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGRFVDD PPTG+E AVI 
Sbjct: 116  TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDDPPTGIEGAVIP 175

Query: 716  PGKGFRAALGLSEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 895
            PGKG R+ALGL EGGPLFGFTKSNELFVGRLAQLGI FS+IGEIITGKGALAQLNIETG+
Sbjct: 176  PGKGLRSALGLREGGPLFGFTKSNELFVGRLAQLGIVFSIIGEIITGKGALAQLNIETGV 235

Query: 896  PINDIEPXXXXXXXXXXXXXXXPGTGKFITDEEED 1000
            PI+DIEP               PG+GKF+TD+EE+
Sbjct: 236  PISDIEPLVLFNVIFFFFAALNPGSGKFVTDDEEE 270


>ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative
            [Ricinus communis] gi|223546847|gb|EEF48344.1|
            Photosystem II 22 kDa protein, chloroplast precursor,
            putative [Ricinus communis]
          Length = 275

 Score =  306 bits (784), Expect = 7e-81
 Identities = 175/277 (63%), Positives = 189/277 (68%), Gaps = 5/277 (1%)
 Frame = +2

Query: 185  MAQTMLLMSSSTCVSGHAADNLKTPALPL-LQRLKPKSFSHSLLPHLSNISKS---SSTF 352
            MAQTML MS  +  + H  D  + P L   + RL+PK FS  L   L   S S   S TF
Sbjct: 1    MAQTMLFMSGVS--TRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLPTNSSSFAPSKTF 58

Query: 353  TTYALFKSKTXXXXXXXXXXXXXX-EDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLG 529
            TT+ALFKSK                ED            KQNELFVGRVAM+GFAASLLG
Sbjct: 59   TTFALFKSKAKAAPKKTVVKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASLLG 118

Query: 530  EALTGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDPPTGLEKAV 709
            E LTGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+FVDDPPTG+E AV
Sbjct: 119  EGLTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPTGIEGAV 178

Query: 710  IKPGKGFRAALGLSEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 889
            I PGKGFRAALGL EGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET
Sbjct: 179  IPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 238

Query: 890  GIPINDIEPXXXXXXXXXXXXXXXPGTGKFITDEEED 1000
            GIP+N+IEP               PGTGKF+TDEE++
Sbjct: 239  GIPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEEDE 275


>gb|AFK43146.1| unknown [Lotus japonicus]
          Length = 273

 Score =  304 bits (779), Expect = 3e-80
 Identities = 180/275 (65%), Positives = 190/275 (69%), Gaps = 3/275 (1%)
 Frame = +2

Query: 185  MAQTMLLMSSSTCVSGHAADNLKTPALPLL-QRLKPKSFSHSLLPHLSNISK-SSSTFTT 358
            MAQTMLLMSS +  S ++ D  K P L L  QRL+PK    S  P  SN S  SS TFTT
Sbjct: 1    MAQTMLLMSSVS--SSYSVDLKKDPLLHLQSQRLRPKFSQLSFNPLPSNSSLFSSRTFTT 58

Query: 359  YALFKSKTXXXXXXXXXXXXXXEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEAL 538
             ALFKSK               ED            KQNELFVGRVAMIGFAASLLGEAL
Sbjct: 59   LALFKSKAKAPPPKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAL 118

Query: 539  TGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDP-PTGLEKAVIK 715
            TGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+FVDD  PTGL+KAVI 
Sbjct: 119  TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESPTGLDKAVIP 178

Query: 716  PGKGFRAALGLSEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 895
            PGKG R ALGLSEGGPLFGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETGI
Sbjct: 179  PGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGI 238

Query: 896  PINDIEPXXXXXXXXXXXXXXXPGTGKFITDEEED 1000
            PIN+IEP               PGTGKF++D+ ED
Sbjct: 239  PINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGED 273


>gb|ABO41835.1| putative photosystem II protein [Gossypium raimondii]
          Length = 278

 Score =  304 bits (779), Expect = 3e-80
 Identities = 176/278 (63%), Positives = 192/278 (69%), Gaps = 6/278 (2%)
 Frame = +2

Query: 185  MAQTMLLMSSSTCVSGHAADNLKTPALPL---LQRLKPKSFSHSLL-PHLSNISKSSS-T 349
            MAQTML+MSS++  + H   NLK     L    Q LKPK  SH L  PH + ++ SSS  
Sbjct: 1    MAQTMLVMSSTSVSTSHVV-NLKRDHTLLHFQAQGLKPKPSSHFLFNPHSNTVAASSSKA 59

Query: 350  FTTYALFKSKTXXXXXXXXXXXXXX-EDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLL 526
            FTT+ALFK KT               ED            KQNELFVGRVAMIGFAASLL
Sbjct: 60   FTTFALFKPKTKAAPKKAAPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLL 119

Query: 527  GEALTGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDPPTGLEKA 706
            GEA+TGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+FVD+PPTG+E A
Sbjct: 120  GEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPPTGIEGA 179

Query: 707  VIKPGKGFRAALGLSEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 886
            VI PGKG R ALGL EGGPLFGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE
Sbjct: 180  VIPPGKGIRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 239

Query: 887  TGIPINDIEPXXXXXXXXXXXXXXXPGTGKFITDEEED 1000
            TGIPI+DIEP               PGTGKF+TDE E+
Sbjct: 240  TGIPISDIEPLVLFNVAFFFFAAINPGTGKFVTDEAEE 277