BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001523
         (765 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06506.1| RNA polymerase [Elaeis guineensis]                     147   2e-33
ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymer...   139   5e-31
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   132   8e-29
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g...   130   3e-28
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi...   130   3e-28

>gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
          Length = 145

 Score =  147 bits (371), Expect = 2e-33
 Identities = 71/120 (59%), Positives = 94/120 (78%)
 Frame = +1

Query: 169 SRITARSEELDMSLVLDVNTEIYPIHVGDRFRMILSKSLYPDGSTVTEHNPQDKQKSLAD 348
           SRI ARSE+ DM + LDVNTEIYP+HVGD+F M+L+ +L  DG+  + +  Q ++KSLAD
Sbjct: 26  SRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVLAPTLSLDGTPDSGYYMQGQRKSLAD 85

Query: 349 KFEYVMHGLLYKMSEDTSDRNPAAEVYISFGGLQMMLKGDPTKIGNYNVDEKLFLLMRRL 528
           KFEYVMHG LYK+SE++S  N   E+Y SFGGL MMLKGDP+   N+ +D++LFLLMR++
Sbjct: 86  KFEYVMHGKLYKISEESSGPNVKVEIYASFGGLLMMLKGDPSNATNFELDQRLFLLMRKV 145


>ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
           subunit RPABC3-like [Cucumis sativus]
           gi|449509097|ref|XP_004163492.1| PREDICTED: probable
           DNA-directed RNA polymerases I, II, and III subunit
           RPABC3-like [Cucumis sativus]
          Length = 146

 Score =  139 bits (351), Expect = 5e-31
 Identities = 68/120 (56%), Positives = 89/120 (74%)
 Frame = +1

Query: 169 SRITARSEELDMSLVLDVNTEIYPIHVGDRFRMILSKSLYPDGSTVTEHNPQDKQKSLAD 348
           SRI ARSE+L M ++LDVNTEIYPI  G++  M+LS +L  DGS VT +  Q+ +KSLAD
Sbjct: 26  SRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLAD 85

Query: 349 KFEYVMHGLLYKMSEDTSDRNPAAEVYISFGGLQMMLKGDPTKIGNYNVDEKLFLLMRRL 528
           KFEY+MHG  YK+S++ S  +   EVY SFGGLQM+LKGDP     + VD+ +FLL+R+L
Sbjct: 86  KFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  132 bits (332), Expect = 8e-29
 Identities = 65/120 (54%), Positives = 88/120 (73%)
 Frame = +1

Query: 169 SRITARSEELDMSLVLDVNTEIYPIHVGDRFRMILSKSLYPDGSTVTEHNPQDKQKSLAD 348
           SRI A+SE+LDM + LDVNTEIYP+H G++F M L+ +L  DG+  T +  Q  +KSLAD
Sbjct: 26  SRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTLDLDGTPDTGYYTQAGRKSLAD 85

Query: 349 KFEYVMHGLLYKMSEDTSDRNPAAEVYISFGGLQMMLKGDPTKIGNYNVDEKLFLLMRRL 528
           KFEYVMHG LYK+SE+ S  N    +Y+SFGGL MML GDP      ++D+++FLL+R++
Sbjct: 86  KFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLMMLSGDPANTAKLDLDQRVFLLIRKV 145


>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
           gi|29244685|gb|AAO73277.1| putative RNA polymerase
           [Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
           putative RNA polymerase [Oryza sativa Japonica Group]
           gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
           Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
           protein OsJ_13351 [Oryza sativa Japonica Group]
           gi|215692970|dbj|BAG88390.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 148

 Score =  130 bits (327), Expect = 3e-28
 Identities = 67/123 (54%), Positives = 91/123 (73%), Gaps = 3/123 (2%)
 Frame = +1

Query: 169 SRITARSEELDMSLVLDVNTEIYPIHVGDRFRMILSKSLYPDGSTVTEHNPQDKQKSLAD 348
           SRI ARS++ DM + LDV T++YP+H GDRF M+L  +L  DG+  +    Q  +K+LAD
Sbjct: 26  SRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTLNLDGTPDSAFFTQAGRKTLAD 85

Query: 349 KFEYVMHGLLYKMSE--DTSDRN-PAAEVYISFGGLQMMLKGDPTKIGNYNVDEKLFLLM 519
           K+EYVMHG LYK+SE  DTSD+N    E+Y SFGGL +MLKGDP+   N+ +D++LFLLM
Sbjct: 86  KYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQRLFLLM 145

Query: 520 RRL 528
           R++
Sbjct: 146 RKV 148


>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
          Length = 215

 Score =  130 bits (327), Expect = 3e-28
 Identities = 67/123 (54%), Positives = 91/123 (73%), Gaps = 3/123 (2%)
 Frame = +1

Query: 169 SRITARSEELDMSLVLDVNTEIYPIHVGDRFRMILSKSLYPDGSTVTEHNPQDKQKSLAD 348
           SRI ARS++ DM + LDV T++YP+H GDRF M+L  +L  DG+  +    Q  +K+LAD
Sbjct: 93  SRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTLNLDGTPDSAFFTQAGRKTLAD 152

Query: 349 KFEYVMHGLLYKMSE--DTSDRN-PAAEVYISFGGLQMMLKGDPTKIGNYNVDEKLFLLM 519
           K+EYVMHG LYK+SE  DTSD+N    E+Y SFGGL +MLKGDP+   N+ +D++LFLLM
Sbjct: 153 KYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQRLFLLM 212

Query: 520 RRL 528
           R++
Sbjct: 213 RKV 215