BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001483
         (1601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   697   0.0  
ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|2...   681   0.0  
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   678   0.0  
ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chlor...   667   0.0  
ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chlor...   665   0.0  

>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  697 bits (1799), Expect = 0.0
 Identities = 336/462 (72%), Positives = 378/462 (81%), Gaps = 2/462 (0%)
 Frame = +2

Query: 83   LMSSLFCNS--SLVGPLAFVRTLASTRTLMRRNSHLFTHTTRSNTIRSFCXXXXXXXXXX 256
            L+SSL+ ++  S   P+A  RTLAS+    RR+  +   +      R             
Sbjct: 14   LVSSLWNSNCRSFGTPVALARTLASSNVFSRRHKRVVWCSNNPTCTRELTASSDSANTSS 73

Query: 257  XXXXXNGNPEYGRLLPCPSHHGPPRIEHLVVKDGGTVLEYICKVLDLPPLFVADLIHFGA 436
                 NG PEY RLLPCPS +GPPR+EHLVV +GG VL+YI K LDLPPLFVADLIHFGA
Sbjct: 74   V----NGYPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHFGA 129

Query: 437  VYYALVCPKPPPTATPEEIELYKEYTEPSVLSKRVSIKGKTVREAQKTFRITSVDEFVET 616
            VYYALVCP+PPP+ATPE++ L+KE T PSVL KR SIKGKT+REAQKTFRIT V+EFVE 
Sbjct: 130  VYYALVCPEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFVEA 189

Query: 617  GTYLRVHVHPKRFPRCYEIDWRSRIISVTESYAVLDKPAGTSVGGTTDNIEESCATFATH 796
            GTYLRVHVHPKRFPRCYEIDW+SRII+VTESY VLDKPAGTSVGGTTDNIEESCATFAT 
Sbjct: 190  GTYLRVHVHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATR 249

Query: 797  ALGLTDPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPVPIGVI 976
            ALGLT PL TTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLY AL AAP+PIG++
Sbjct: 250  ALGLTTPLRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIGIV 309

Query: 977  THYMRPINIAPRLVSEEFTKRWYLCQLEVLECKRVPWPSAEIVYKYSVEDCGWPSQEFAY 1156
            THYMRP+NIAPRL+SE+F K WYLCQLEVLECK VPWPS  I  KY +ED GWP +  A+
Sbjct: 310  THYMRPVNIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNSAF 369

Query: 1157 ECKISLLTGRTHQIRAQLAACGAPIVGDAMYMPAASAEILRPGLNPLGKCRKQYASENDK 1336
            +CKI+LLTGRTHQIRAQLAACGAPIVGD+MYMPAA AEI  PGLNP GK +K+Y +END+
Sbjct: 370  KCKINLLTGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTENDR 429

Query: 1337 EVAIEDWIACHGKEPRIAIGLQACQISWDDGEHFYEARSPWW 1462
            E A+ +WIA HGKEP +AIGLQACQISWDDGEHFY+A SPWW
Sbjct: 430  ETAVAEWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_002304926.1| predicted protein [Populus trichocarpa] gi|222847890|gb|EEE85437.1|
            predicted protein [Populus trichocarpa]
          Length = 470

 Score =  681 bits (1758), Expect = 0.0
 Identities = 328/462 (70%), Positives = 372/462 (80%), Gaps = 2/462 (0%)
 Frame = +2

Query: 86   MSSLFCNS--SLVGPLAFVRTLASTRTLMRRNSHLFTHTTRSNTIRSFCXXXXXXXXXXX 259
            ++S+F  S  S   P+  +RTLA TR     N       + S    S             
Sbjct: 6    LASIFSYSYRSFSAPVTLLRTLAFTRAYSL-NKKALVWCSLSKKKLSCESLKQDIACTTA 64

Query: 260  XXXXNGNPEYGRLLPCPSHHGPPRIEHLVVKDGGTVLEYICKVLDLPPLFVADLIHFGAV 439
                NG PEY RLLPCPSH+ PPRIEHLVV + G VL+YICK LDLPPLFVADLIHFGAV
Sbjct: 65   TSSVNGYPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFGAV 124

Query: 440  YYALVCPKPPPTATPEEIELYKEYTEPSVLSKRVSIKGKTVREAQKTFRITSVDEFVETG 619
            +YALVCP+PP TATPE+I +++E T PSVL KR SIKGKTVREAQKTFRIT VD+F+E G
Sbjct: 125  HYALVCPQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAG 184

Query: 620  TYLRVHVHPKRFPRCYEIDWRSRIISVTESYAVLDKPAGTSVGGTTDNIEESCATFATHA 799
             YLRVHVHPKRFPRCY+IDW+SRII VTES+ VLDKPAGTSVGGTTDNIEESCATFAT A
Sbjct: 185  MYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRA 244

Query: 800  LGLTDPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPVPIGVIT 979
            LGLT PL TTHQIDNCTEGCVVLART+E CSVFHGKIREK VKKLY+AL A+PVPIGV+ 
Sbjct: 245  LGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGVVN 304

Query: 980  HYMRPINIAPRLVSEEFTKRWYLCQLEVLECKRVPWPSAEIVYKYSVEDCGWPSQEFAYE 1159
            HYMRPIN+APRLVSEEF K W+LCQLEV+ECKRVPWP A +  KY V+DCGWPS++ AYE
Sbjct: 305  HYMRPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHAYE 364

Query: 1160 CKISLLTGRTHQIRAQLAACGAPIVGDAMYMPAASAEILRPGLNPLGKCRKQYASENDKE 1339
            CKI+LLTGRTHQIRAQLAA GAP+VGD+MYMPAA AE++ PG NP GK +KQY SE+DK 
Sbjct: 365  CKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDDKA 424

Query: 1340 VAIEDWIACHGKEPRIAIGLQACQISWDDGEHFYEARSPWWR 1465
            +A+E+W+ CHGKEP +AIGLQACQISWDDG+H Y A SPWWR
Sbjct: 425  IAVEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  678 bits (1750), Expect = 0.0
 Identities = 325/471 (69%), Positives = 382/471 (81%), Gaps = 7/471 (1%)
 Frame = +2

Query: 74   NNILMSSLFCNS--SLVGPLAFVRTLASTRTLMRRNSHLFTHTTR---SNTIRSFCXXXX 238
            +++ ++S+F     S V P+  +RTLAST        H      R   ++  R FC    
Sbjct: 2    SSLSLASIFAGGYRSFVTPVTVLRTLASTHAYSFHRHHPKNALARFSLNSHERKFCCESS 61

Query: 239  XXXXXXXXXXX--NGNPEYGRLLPCPSHHGPPRIEHLVVKDGGTVLEYICKVLDLPPLFV 412
                         NGN +Y RLLPCPS++ PPRIEHLVV + G VL+YICK LDLPPLFV
Sbjct: 62   KPEVAYTTNTSCVNGNSDYDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFV 121

Query: 413  ADLIHFGAVYYALVCPKPPPTATPEEIELYKEYTEPSVLSKRVSIKGKTVREAQKTFRIT 592
            ADLI FGAV+YALVCP+PP TATPE+I L++++T PSVL KR SIKGKTVREAQKTFRIT
Sbjct: 122  ADLIDFGAVHYALVCPRPPTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRIT 181

Query: 593  SVDEFVETGTYLRVHVHPKRFPRCYEIDWRSRIISVTESYAVLDKPAGTSVGGTTDNIEE 772
             VD+++E GTYLRVHVHPKRFPRCY+IDW+SRII+VT+ Y VLDKPAGTSVGGT DNIEE
Sbjct: 182  HVDQYLEAGTYLRVHVHPKRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEE 241

Query: 773  SCATFATHALGLTDPLMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTA 952
            SCATFAT ALGLT PL TTHQIDNCTEGCVVLAR+KEYCSVFHGKIREKKVKKLYLAL A
Sbjct: 242  SCATFATRALGLTTPLKTTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAA 301

Query: 953  APVPIGVITHYMRPINIAPRLVSEEFTKRWYLCQLEVLECKRVPWPSAEIVYKYSVEDCG 1132
            +PVP+GVI +YMRP+NIAPRL+SEEF   W+LCQLEVLEC++VPWP A I  KYSVEDCG
Sbjct: 302  SPVPVGVIKNYMRPVNIAPRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCG 361

Query: 1133 WPSQEFAYECKISLLTGRTHQIRAQLAACGAPIVGDAMYMPAASAEILRPGLNPLGKCRK 1312
            WPS++FAYECKI+LLTGRTHQIRAQLAA GAP+VGD+MYMPAA AE+  PGLNP GK RK
Sbjct: 362  WPSKDFAYECKINLLTGRTHQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRK 421

Query: 1313 QYASENDKEVAIEDWIACHGKEPRIAIGLQACQISWDDGEHFYEARSPWWR 1465
            QY +E+D+ +A+ +W+A HGKEP++AIGLQAC+ISWD+G+H Y+A SPWWR
Sbjct: 422  QYTNESDESMAVAEWVAQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_003541622.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  667 bits (1721), Expect = 0.0
 Identities = 305/395 (77%), Positives = 349/395 (88%)
 Frame = +2

Query: 281  PEYGRLLPCPSHHGPPRIEHLVVKDGGTVLEYICKVLDLPPLFVADLIHFGAVYYALVCP 460
            P+Y RLLPCPSH  PPRIEHLV+ +GG VLE ICK LDLPPL+V+DLI FGAVYYALVCP
Sbjct: 78   PKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLPPLYVSDLIQFGAVYYALVCP 137

Query: 461  KPPPTATPEEIELYKEYTEPSVLSKRVSIKGKTVREAQKTFRITSVDEFVETGTYLRVHV 640
            +PPP AT E+I ++KE TEPSVL KR SIKGKTVREAQKTFR+T VD+FVE GTYLRVHV
Sbjct: 138  QPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVHV 197

Query: 641  HPKRFPRCYEIDWRSRIISVTESYAVLDKPAGTSVGGTTDNIEESCATFATHALGLTDPL 820
            HPKRFPR YEIDWRSRII+V ESY VLDKPAGTSVGGTTDNIEESCATFAT ALG+T PL
Sbjct: 198  HPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTPL 257

Query: 821  MTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPVPIGVITHYMRPIN 1000
            MTTHQIDNCTEGCVVLARTK+YCS+FHGKIREKKVKKLYLAL A+P+P G+ITHYMRPIN
Sbjct: 258  MTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTGIITHYMRPIN 317

Query: 1001 IAPRLVSEEFTKRWYLCQLEVLECKRVPWPSAEIVYKYSVEDCGWPSQEFAYECKISLLT 1180
            +APRL+SE+F K W+LCQLEVLEC+++PWP+  I  KY VEDCGWPSQ++AYECKI+LLT
Sbjct: 318  MAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDYAYECKINLLT 377

Query: 1181 GRTHQIRAQLAACGAPIVGDAMYMPAASAEILRPGLNPLGKCRKQYASENDKEVAIEDWI 1360
            G+THQIRAQ AA  AP++GD+MYMPAA A++  PGLNP GK +K ++SE++KE A+ +W+
Sbjct: 378  GKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYKKDFSSESEKETAVVNWM 437

Query: 1361 ACHGKEPRIAIGLQACQISWDDGEHFYEARSPWWR 1465
            A HGKEP +AIGLQACQISWDD EHFYEA  PWWR
Sbjct: 438  AQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 472


>ref|XP_003547248.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Glycine
            max]
          Length = 473

 Score =  665 bits (1716), Expect = 0.0
 Identities = 307/394 (77%), Positives = 347/394 (88%)
 Frame = +2

Query: 284  EYGRLLPCPSHHGPPRIEHLVVKDGGTVLEYICKVLDLPPLFVADLIHFGAVYYALVCPK 463
            +Y RLLPCPSH  PPRIEHLVV +GG VLE+ICK LDLPPL+V+DLI FGAVYYALVCP+
Sbjct: 79   KYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLYVSDLIQFGAVYYALVCPQ 138

Query: 464  PPPTATPEEIELYKEYTEPSVLSKRVSIKGKTVREAQKTFRITSVDEFVETGTYLRVHVH 643
            PPP AT E+I ++KE TEPSVL KR SIKGKTVREAQKTFR+T VD+FVE GTYLRVHVH
Sbjct: 139  PPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVHVH 198

Query: 644  PKRFPRCYEIDWRSRIISVTESYAVLDKPAGTSVGGTTDNIEESCATFATHALGLTDPLM 823
            PKR PRCYEIDWRSRII+V ESY VLDKPAGTSVGGTTDNIEESCATFAT ALG+T PLM
Sbjct: 199  PKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTPLM 258

Query: 824  TTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPVPIGVITHYMRPINI 1003
            TTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKK YLAL A P+P G+ITHYMRPI++
Sbjct: 259  TTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGIITHYMRPIDM 318

Query: 1004 APRLVSEEFTKRWYLCQLEVLECKRVPWPSAEIVYKYSVEDCGWPSQEFAYECKISLLTG 1183
            APRL+SE+F K W+LCQLEVLEC++VPWP+  I  KY +EDCGWPSQ++AYECKI+LLTG
Sbjct: 319  APRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAYECKINLLTG 378

Query: 1184 RTHQIRAQLAACGAPIVGDAMYMPAASAEILRPGLNPLGKCRKQYASENDKEVAIEDWIA 1363
            +THQIRAQ AA  AP++GD+MYMPAA A +  PGLNP GK +K ++SE++KE A+ +WIA
Sbjct: 379  KTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYKKDFSSESEKETAVVNWIA 438

Query: 1364 CHGKEPRIAIGLQACQISWDDGEHFYEARSPWWR 1465
             HGKEP +AIGLQACQISWDD EHFYEA SPWWR
Sbjct: 439  QHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 472