BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001390
         (3833 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55141.1|PHYA_PETCR RecName: Full=Phytochrome A gi|556667|emb...  2014   0.0  
ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera] g...  1684   0.0  
sp|P33530.1|PHYA1_TOBAC RecName: Full=Phytochrome A1 gi|297478|e...  1682   0.0  
gb|ACC60969.1| phytochrome A [Vitis riparia]                         1679   0.0  
ref|NP_001234490.1| alternative transcript type 3 [Solanum lycop...  1664   0.0  

>sp|P55141.1|PHYA_PETCR RecName: Full=Phytochrome A gi|556667|emb|CAA53165.1| phytochrome A
            [Petroselinum crispum]
          Length = 1129

 Score = 2014 bits (5218), Expect = 0.0
 Identities = 1017/1116 (91%), Positives = 1047/1116 (93%)
 Frame = -3

Query: 3570 GRANQNARVVLTTLDAKIHADFEESGNSFDYSSSVRVTSAVGENLSIQSNKLTNAYLHHI 3391
            GRANQNARVVLTTLDAKIHADFEESGNSFDYSSSVRVTSAVGEN SIQSNKLT AYLHHI
Sbjct: 14   GRANQNARVVLTTLDAKIHADFEESGNSFDYSSSVRVTSAVGENSSIQSNKLTTAYLHHI 73

Query: 3390 QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHTVPSVGEHPALGIGTDVRTIFT 3211
            QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSH VPSVGEHP LGIGTDVRTIFT
Sbjct: 74   QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIFT 133

Query: 3210 APSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMTA 3031
            APSAAALQKAVGF DINLLNPILVHCKTSGKP+YAIAHRVTGSLIIDFEPVKPYEVPMTA
Sbjct: 134  APSAAALQKAVGFTDINLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEVPMTA 193

Query: 3030 AGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVTA 2851
            AGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVTA
Sbjct: 194  AGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVTA 253

Query: 2850 EVTKPGLEPYLGLHYPATDVPQAARFLFLKNKIRMICDCRAKHVPVLQDEKLPFELTLCG 2671
            EVTKPGLEPY GLHYPATDVPQAARFLFLKNK+RMICDCRA   PVLQDEKLPFELTLCG
Sbjct: 254  EVTKPGLEPYFGLHYPATDVPQAARFLFLKNKVRMICDCRANSAPVLQDEKLPFELTLCG 313

Query: 2670 STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTSP 2491
            STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTSP
Sbjct: 314  STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTSP 373

Query: 2490 RFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNIXXXXXXXXXXXXXDAPLGIVSQS 2311
            RFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNI             DAPLGIVSQS
Sbjct: 374  RFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQS 433

Query: 2310 PNMMDLVKCDGAALLFKNKVYRLGATPSDYQLQDIVSWLMEYHSDSTGLSTDSLYDAGFP 2131
            PNMMDLVKCDGAALL+KNKVYRLGATPSDYQL+DIVSWL EYH+DSTGLSTDSLYDAG+P
Sbjct: 434  PNMMDLVKCDGAALLYKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGYP 493

Query: 2130 GALALGDVVCGMAVVKITSRDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSFKA 1951
            GALALGDVVCGMAVVKITS DMLFWFRSHAAGHIRWGGAK EPDE  DGRKMHPRSSFKA
Sbjct: 494  GALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKAEPDENHDGRKMHPRSSFKA 553

Query: 1950 FLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKSMVPKSDEIRSNTDVIHSKLNDLKI 1771
            FLEVVKTRS+TWK+FEMDAIHSLQLILRKALS EK++  + DEIRSNTDVIH+KLNDLKI
Sbjct: 554  FLEVVKTRSTTWKEFEMDAIHSLQLILRKALSVEKAVAAQGDEIRSNTDVIHTKLNDLKI 613

Query: 1770 EGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDNAMGKHLLTLV 1591
            EGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVD AMGKHLLTLV
Sbjct: 614  EGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLTLV 673

Query: 1590 EDSSVDTVEKMLAFALQGKEEQGIQFQFKTHGSKEDSVPITLVVNACASRGLHDNVVGVC 1411
            EDSSV TV  +LA ALQGKEEQGI F+FKT+GS+EDSVPIT+VVNACA+RGLHDNVVGVC
Sbjct: 674  EDSSVGTVVFLLALALQGKEEQGIPFEFKTYGSREDSVPITVVVNACATRGLHDNVVGVC 733

Query: 1410 FVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWH 1231
            FVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGW 
Sbjct: 734  FVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWR 793

Query: 1230 REDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQTTEKICFSFFARDGKYV 1051
            REDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQ +EKICFSFFA DGKYV
Sbjct: 794  REDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQISEKICFSFFATDGKYV 853

Query: 1050 ECLLCASKKLDGEGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQAKN 871
            ECLLCASKKL GEGTVTGIFCF           LHIQRLTEQTA+KRLKTL+YLRRQAKN
Sbjct: 854  ECLLCASKKLHGEGTVTGIFCFLQLASQELQQALHIQRLTEQTAMKRLKTLSYLRRQAKN 913

Query: 870  PLCGIDFIREKLEDIGLGEEQTKLLRTSVHCQRQLNKXXXXXXXXXXXDGYLDLEMSEFR 691
            PLCGI+F+REKLE+IG+GEEQTKL RTSVHCQR +NK           DGYLDLEMSEFR
Sbjct: 914  PLCGINFVREKLEEIGMGEEQTKLFRTSVHCQRHVNKILDDTDLDSIIDGYLDLEMSEFR 973

Query: 690  LHDVYVASRSQVLMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLTPV 511
            LHDVYVASRSQV MRSNGKAIQVVDNFSEEMMSETLYGDSLRLQ+VLADFMSVCVNLTPV
Sbjct: 974  LHDVYVASRSQVSMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQKVLADFMSVCVNLTPV 1033

Query: 510  GGHLGIIVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLLIS 331
            GGHLGI VTLT+DNLGQSVQLVHLEFRITH GAGVPE+ +SQMFGSDSETSEEGISLLIS
Sbjct: 1034 GGHLGISVTLTEDNLGQSVQLVHLEFRITHTGAGVPEEAVSQMFGSDSETSEEGISLLIS 1093

Query: 330  RKLVKLMNGDVHYLREAGKSTFIITVELAAASKRES 223
            RKLVKLMNGDVHYLREAGKSTFIITVELAAASKRES
Sbjct: 1094 RKLVKLMNGDVHYLREAGKSTFIITVELAAASKRES 1129


>ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera]
            gi|147838424|emb|CAN76586.1| hypothetical protein
            VITISV_020287 [Vitis vinifera]
            gi|183239014|gb|ACC60965.1| phytochrome A [Vitis
            vinifera] gi|296089871|emb|CBI39690.3| unnamed protein
            product [Vitis vinifera]
          Length = 1124

 Score = 1684 bits (4360), Expect = 0.0
 Identities = 834/1116 (74%), Positives = 950/1116 (85%), Gaps = 2/1116 (0%)
 Frame = -3

Query: 3570 GRANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRVTSAVGENLSIQSNKLTNAYLHH 3394
            GR+  +AR++  TT+DAK+HADFEESG+SFDYSSSVR T A G+    +S+K+T AYLHH
Sbjct: 14   GRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQP-RSDKVTTAYLHH 72

Query: 3393 IQKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHTVPSVGEHPALGIGTDVRTIF 3214
            IQKGKLIQP G LLA+DEK+FK++AYSENAPEMLTMVSH VPSVGEHP LGIGTDVRTIF
Sbjct: 73   IQKGKLIQPFGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF 132

Query: 3213 TAPSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMT 3034
            + PSA+AL KA+GF +++LLNPILVHCKTSGKP+YAI HRVTGSLIIDFEPVKPYEVPMT
Sbjct: 133  SGPSASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMT 192

Query: 3033 AAGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVT 2854
            AAGALQSYKLA+KA+ RLQ+LP GS+ERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEV 
Sbjct: 193  AAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVV 252

Query: 2853 AEVTKPGLEPYLGLHYPATDVPQAARFLFLKNKIRMICDCRAKHVPVLQDEKLPFELTLC 2674
            +E+TKPGLEPYLGLHYPATD+PQAARFLF+KNK+RMICDCRAKH+ VLQDEKLPF+LTLC
Sbjct: 253  SEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLC 312

Query: 2673 GSTLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSV-KSKKLWGLVVCHNT 2497
            GSTLRAPHSCH+QYMENMNSIASLVMAVV+ND DE  ESS+     K K+LWGLVVCH+T
Sbjct: 313  GSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHT 372

Query: 2496 SPRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNIXXXXXXXXXXXXXDAPLGIVS 2317
            +PRFVPFPLRYACEFLAQVFAIHV+KELELE+QI+EKNI             DAPLGIVS
Sbjct: 373  TPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVS 432

Query: 2316 QSPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLQDIVSWLMEYHSDSTGLSTDSLYDAG 2137
            QSPN+MDLVKCDGAALL+KNKV+RLG TPSD+QL DI SWL EYH DSTGLSTDSLYDAG
Sbjct: 433  QSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAG 492

Query: 2136 FPGALALGDVVCGMAVVKITSRDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSF 1957
            +PGALALGD VCGMA VKITS+D LFWFRSH A  +RWGGAKHEP EKDDGRKMHPRSSF
Sbjct: 493  YPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSF 552

Query: 1956 KAFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKSMVPKSDEIRSNTDVIHSKLNDL 1777
            KAFLEVVKTRS  WKD+EMDAIHSLQLILR A  D ++M         NT+ IH+KLNDL
Sbjct: 553  KAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAM-------DVNTNAIHTKLNDL 605

Query: 1776 KIEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDNAMGKHLLT 1597
            KIEG+QELEAVTSEMVRLIETA+VPI AVD D +VNGWNTKI+ELT LPVD A+G HLLT
Sbjct: 606  KIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLT 665

Query: 1596 LVEDSSVDTVEKMLAFALQGKEEQGIQFQFKTHGSKEDSVPITLVVNACASRGLHDNVVG 1417
            LVEDSS DTV+KML  ALQG+EEQ +QF+ KTHGSK DS PI+LVVNACASR LH+NVVG
Sbjct: 666  LVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHENVVG 725

Query: 1416 VCFVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSG 1237
            VCFVAQD+TSQKT+MDKFTRI+GDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AM +LSG
Sbjct: 726  VCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSG 785

Query: 1236 WHREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQTTEKICFSFFARDGK 1057
            W+RE+VM+KMLLGE+FG   +CC LK++EAFV LG+VLN+ +TG+ +EK+ F FF++ GK
Sbjct: 786  WNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGK 845

Query: 1056 YVECLLCASKKLDGEGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQA 877
            YVECLL  SKKLD EG VTG+FCF           LHIQRL+EQTA+KRLK LAY++RQ 
Sbjct: 846  YVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQI 905

Query: 876  KNPLCGIDFIREKLEDIGLGEEQTKLLRTSVHCQRQLNKXXXXXXXXXXXDGYLDLEMSE 697
            KNPL GI F R+ +ED  LGEEQ ++L TS  CQRQL+K           +GYLDLEM E
Sbjct: 906  KNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVE 965

Query: 696  FRLHDVYVASRSQVLMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLT 517
            F L +V VAS SQV+++SNGK IQ+V++  E +M+ETLYGD LRLQQVLADF+ + VN T
Sbjct: 966  FTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFT 1025

Query: 516  PVGGHLGIIVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLL 337
            P GG L +  +L KD LG+SV LVHLE RITHAG GVPE LL+QMFG++ + SEEGISLL
Sbjct: 1026 PGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLL 1085

Query: 336  ISRKLVKLMNGDVHYLREAGKSTFIITVELAAASKR 229
            ISRKLVKLMNGDV YLREAGKSTFII++ELAAA K+
Sbjct: 1086 ISRKLVKLMNGDVQYLREAGKSTFIISIELAAARKK 1121


>sp|P33530.1|PHYA1_TOBAC RecName: Full=Phytochrome A1 gi|297478|emb|CAA47284.1| type-A
            phytochrome [Nicotiana tabacum]
          Length = 1124

 Score = 1682 bits (4356), Expect = 0.0
 Identities = 829/1114 (74%), Positives = 951/1114 (85%), Gaps = 2/1114 (0%)
 Frame = -3

Query: 3567 RANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRVTSAVGENLSIQSNKLTNAYLHHI 3391
            R+  +AR++  TT+DAK+HADFEESG+SFDYSSSVRVTS  G+    +S+++T AYL+ I
Sbjct: 15   RSKHSARIIAQTTIDAKLHADFEESGDSFDYSSSVRVTSVAGDERKPKSDRVTTAYLNQI 74

Query: 3390 QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHTVPSVGEHPALGIGTDVRTIFT 3211
            QKGK IQP GCLLA+DEK+FK++A+SENAPEMLTMVSH VPSVGE PALGIGTD+RTIFT
Sbjct: 75   QKGKFIQPFGCLLALDEKTFKVIAFSENAPEMLTMVSHAVPSVGELPALGIGTDIRTIFT 134

Query: 3210 APSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMTA 3031
             PSAAALQKA+GF +++LLNP+LVHCKTSGKPYYAI HRVTGSLIIDFEPVKPYEVPMTA
Sbjct: 135  GPSAAALQKALGFGEVSLLNPVLVHCKTSGKPYYAIVHRVTGSLIIDFEPVKPYEVPMTA 194

Query: 3030 AGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVTA 2851
            AGALQSYKLA+KA+ RLQALP GSMERLCDTMVQEVFELTGYDRVM YKFHDDDHGEV A
Sbjct: 195  AGALQSYKLAAKAITRLQALPSGSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVVA 254

Query: 2850 EVTKPGLEPYLGLHYPATDVPQAARFLFLKNKIRMICDCRAKHVPVLQDEKLPFELTLCG 2671
            E+TKPGL+PYLGLHYPATD+PQAARFLF+KNK+RMICDCRAKHV V+QDEKLPF+LTLCG
Sbjct: 255  EITKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCG 314

Query: 2670 STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRN-SVKSKKLWGLVVCHNTS 2494
            STLRAPH CHLQYMENM+SIASLVMAVV+ND DE  ESSD   S K K+LWGLVVCHNT+
Sbjct: 315  STLRAPHYCHLQYMENMSSIASLVMAVVVNDGDEEGESSDSTQSQKRKRLWGLVVCHNTT 374

Query: 2493 PRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNIXXXXXXXXXXXXXDAPLGIVSQ 2314
            PRFVPFPLRYACEFLAQVFAIHV+KELELE+QI+EKNI              APLGIVSQ
Sbjct: 375  PRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRVAPLGIVSQ 434

Query: 2313 SPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLQDIVSWLMEYHSDSTGLSTDSLYDAGF 2134
            SPN+MDLVKCDGAALL+KNK++RLG TPSD+QL DIVSWL EYH+DSTGLSTDSLYDAGF
Sbjct: 435  SPNIMDLVKCDGAALLYKNKIHRLGMTPSDFQLHDIVSWLSEYHTDSTGLSTDSLYDAGF 494

Query: 2133 PGALALGDVVCGMAVVKITSRDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSFK 1954
            PGALALGDVVCGMA V+I+ +  LFW+RSH A  +RWGGAKHEP EKDDGRKMHPRSSFK
Sbjct: 495  PGALALGDVVCGMAAVRISDKGWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFK 554

Query: 1953 AFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKSMVPKSDEIRSNTDVIHSKLNDLK 1774
            AFLEVVKTRS  WKD+EMDAIHSLQLILR A  D       +D + SNT++IH+KLNDLK
Sbjct: 555  AFLEVVKTRSVPWKDYEMDAIHSLQLILRNASKD-------ADAMDSNTNIIHTKLNDLK 607

Query: 1773 IEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDNAMGKHLLTL 1594
            I+G+QELEAVT+EMVRLIETA+VPIFAVD D  +NGWNTKIAELTGLPVD A+G HLLTL
Sbjct: 608  IDGLQELEAVTAEMVRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLLTL 667

Query: 1593 VEDSSVDTVEKMLAFALQGKEEQGIQFQFKTHGSKEDSVPITLVVNACASRGLHDNVVGV 1414
            VEDSSVDTV KML  ALQGKEE+ ++F+ KTHG   DS PI+L+VNACASR + D+VVGV
Sbjct: 668  VEDSSVDTVSKMLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDSVVGV 727

Query: 1413 CFVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGW 1234
            CF+AQD+T QK IMDKFTRI+GDY+AI+QNP+PLIPPIFGTD+FGWCSEWN AMT+L+GW
Sbjct: 728  CFIAQDITGQKNIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGW 787

Query: 1233 HREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQTTEKICFSFFARDGKY 1054
             R+DV++KMLLGE+FG Q +CC LK++EAFVN GVVLNNA+TGQ   KI F FFAR+GKY
Sbjct: 788  RRDDVIDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFARNGKY 847

Query: 1053 VECLLCASKKLDGEGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQAK 874
            VECLLC SK+LD EG VTG+FCF           LHIQRL+EQTA+KRLK LAY+RRQ +
Sbjct: 848  VECLLCVSKRLDREGAVTGLFCFLQLASHELQQALHIQRLSEQTALKRLKVLAYIRRQIR 907

Query: 873  NPLCGIDFIREKLEDIGLGEEQTKLLRTSVHCQRQLNKXXXXXXXXXXXDGYLDLEMSEF 694
            NPL GI F R+ LE   LGEEQ  +LRTS  CQRQLNK           DGYLDLEM EF
Sbjct: 908  NPLSGIIFSRKMLEGTNLGEEQKNILRTSSQCQRQLNKILDDTDLDSIIDGYLDLEMLEF 967

Query: 693  RLHDVYVASRSQVLMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLTP 514
            +LH+V VAS SQ++M+SNGK I +V++  E++++ETLYGDS RLQQVLA+F+ VCVN TP
Sbjct: 968  KLHEVLVASISQIMMKSNGKNIMIVNDMVEDLLNETLYGDSPRLQQVLANFLLVCVNSTP 1027

Query: 513  VGGHLGIIVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLLI 334
             GG L I  TLTKD +G+SVQL  LE RI+H G GVPE+LLSQMFG+++E SEEGISLLI
Sbjct: 1028 SGGQLSISGTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGISLLI 1087

Query: 333  SRKLVKLMNGDVHYLREAGKSTFIITVELAAASK 232
            SRKLVKLMNG+V YLREAG+STFII+VELA A+K
Sbjct: 1088 SRKLVKLMNGEVQYLREAGRSTFIISVELAVATK 1121


>gb|ACC60969.1| phytochrome A [Vitis riparia]
          Length = 1124

 Score = 1679 bits (4348), Expect = 0.0
 Identities = 832/1116 (74%), Positives = 949/1116 (85%), Gaps = 2/1116 (0%)
 Frame = -3

Query: 3570 GRANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRVTSAVGENLSIQSNKLTNAYLHH 3394
            GR+  +AR++  TT+DAK+HADFEESG+SFDYSSSVR T A G+    +S+K+T AYLHH
Sbjct: 14   GRSKHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQP-RSDKVTTAYLHH 72

Query: 3393 IQKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHTVPSVGEHPALGIGTDVRTIF 3214
            IQKGKLIQP G LLA+D+K+FK++AYSENAPEMLTMVSH VPSVGEHP LGIGTDVRTIF
Sbjct: 73   IQKGKLIQPFGSLLALDDKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF 132

Query: 3213 TAPSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMT 3034
            + PSA+AL KA+GF +++LLNPILVHCKTSGKP+YAI HRVTGSLIIDFEPVKPYEVPMT
Sbjct: 133  SGPSASALHKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMT 192

Query: 3033 AAGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVT 2854
            AAGALQSYKLA+KA+ RLQ+LP GS+ERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEV 
Sbjct: 193  AAGALQSYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVV 252

Query: 2853 AEVTKPGLEPYLGLHYPATDVPQAARFLFLKNKIRMICDCRAKHVPVLQDEKLPFELTLC 2674
            +E+TKPGLEPYLGLHYPATD+PQAARFLF+KNK+RMICDCRAKH+ VLQDEKLPF+LTLC
Sbjct: 253  SEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLC 312

Query: 2673 GSTLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSV-KSKKLWGLVVCHNT 2497
            GSTLRAPHSCH+QYMENMNSIASLVMAVV+ND DE  ESS+     K K+LWGLVVCH+T
Sbjct: 313  GSTLRAPHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHT 372

Query: 2496 SPRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNIXXXXXXXXXXXXXDAPLGIVS 2317
            +PRFVPFPLRYACEFLAQVFAIHV+KELELE+QI+EKNI             DAPLGIVS
Sbjct: 373  TPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVS 432

Query: 2316 QSPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLQDIVSWLMEYHSDSTGLSTDSLYDAG 2137
            QSPN+MDLVKCDGAALL+KNKV+RLG TPSD+QL DI SWL EYH DSTGLSTDSLYDAG
Sbjct: 433  QSPNVMDLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAG 492

Query: 2136 FPGALALGDVVCGMAVVKITSRDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSF 1957
            +PGALALGD VCGMA VKITS+D LFWFRSH A  +RWGGAKHEP EKDDGRKMHPRSSF
Sbjct: 493  YPGALALGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSF 552

Query: 1956 KAFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKSMVPKSDEIRSNTDVIHSKLNDL 1777
            KAFLEVVKTRS  WKD+EMDAIHSLQLILR A  D ++M         NT+ IH+KLNDL
Sbjct: 553  KAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAM-------DVNTNAIHTKLNDL 605

Query: 1776 KIEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDNAMGKHLLT 1597
            KIEG+QELEAVTSEMVRLIETA+VPI AVD D +VNGWNTKI+ELT LPVD A+G HLLT
Sbjct: 606  KIEGMQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLLT 665

Query: 1596 LVEDSSVDTVEKMLAFALQGKEEQGIQFQFKTHGSKEDSVPITLVVNACASRGLHDNVVG 1417
            LVEDSS DTV+KML  ALQG+EEQ +QF+ KTHGSK DS PI+LVVNACASR L +NVVG
Sbjct: 666  LVEDSSADTVKKMLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLDENVVG 725

Query: 1416 VCFVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSG 1237
            VCFVAQD+TSQKT+MDKFTRI+GDYKAIVQNPNPLIPPIFGTDEFGWCSEWN AM +LSG
Sbjct: 726  VCFVAQDITSQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSG 785

Query: 1236 WHREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQTTEKICFSFFARDGK 1057
            W+RE+VM+KMLLGE+FG   +CC LK++EAFV LG+VLN+ +TG+ +EK+ F FF++ GK
Sbjct: 786  WNREEVMDKMLLGEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGK 845

Query: 1056 YVECLLCASKKLDGEGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQA 877
            YVECLL  SKKLD EG VTG+FCF           LHIQRL+EQTA+KRLK LAY++RQ 
Sbjct: 846  YVECLLSVSKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQI 905

Query: 876  KNPLCGIDFIREKLEDIGLGEEQTKLLRTSVHCQRQLNKXXXXXXXXXXXDGYLDLEMSE 697
            KNPL GI F R+ +ED  LGEEQ ++L TS  CQRQL+K           +GYLDLEM E
Sbjct: 906  KNPLSGIIFSRKMMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVE 965

Query: 696  FRLHDVYVASRSQVLMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLT 517
            F L +V VAS SQV+++SNGK IQ+V++  E +M+ETLYGD LRLQQVLADF+ + VN T
Sbjct: 966  FTLREVLVASISQVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFT 1025

Query: 516  PVGGHLGIIVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLL 337
            P GG L +  +L KD LG+SV LVHLE RITHAG GVPE LL+QMFG++ + SEEGISLL
Sbjct: 1026 PGGGQLSVAASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMFGNNGDASEEGISLL 1085

Query: 336  ISRKLVKLMNGDVHYLREAGKSTFIITVELAAASKR 229
            ISRKLVKLMNGDV YLREAGKSTFII++ELAAA K+
Sbjct: 1086 ISRKLVKLMNGDVQYLREAGKSTFIISIELAAARKK 1121


>ref|NP_001234490.1| alternative transcript type 3 [Solanum lycopersicum]
            gi|3492795|emb|CAA05086.1| phyA [Solanum lycopersicum]
            gi|3492797|emb|CAA05087.1| phyA [Solanum lycopersicum]
            gi|3492799|emb|CAA05088.1| phyA [Solanum lycopersicum]
            gi|3492801|emb|CAA05089.1| phyA [Solanum lycopersicum]
          Length = 1123

 Score = 1664 bits (4308), Expect = 0.0
 Identities = 819/1113 (73%), Positives = 941/1113 (84%), Gaps = 2/1113 (0%)
 Frame = -3

Query: 3567 RANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRVTSAVGENLSIQSNKLTNAYLHHI 3391
            R+  +AR+V  T++DAK+HADFEESG+SFDYSSSVRVTS  G+    +S+K+T AYLH I
Sbjct: 15   RSKHSARIVAQTSIDAKLHADFEESGDSFDYSSSVRVTSVAGDEEKPKSDKVTTAYLHQI 74

Query: 3390 QKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHTVPSVGEHPALGIGTDVRTIFT 3211
            QKGK IQP GCLLA+DEK+ K++A+SENAPEMLTMVSH VPSVGEHP LGIGTD+RTIFT
Sbjct: 75   QKGKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGTDIRTIFT 134

Query: 3210 APSAAALQKAVGFADINLLNPILVHCKTSGKPYYAIAHRVTGSLIIDFEPVKPYEVPMTA 3031
             PS AALQKA+GF +++LLNP+LVHCK SGKP+YAI HRVTGSLI+DFEPVKPYEVPMTA
Sbjct: 135  GPSGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLILDFEPVKPYEVPMTA 194

Query: 3030 AGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVTA 2851
            AGALQSYKLA+KA+ RLQ+LP GSMERLCDTMVQEVFELTGYDRVM YKFH+DDHGEV +
Sbjct: 195  AGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHEDDHGEVVS 254

Query: 2850 EVTKPGLEPYLGLHYPATDVPQAARFLFLKNKIRMICDCRAKHVPVLQDEKLPFELTLCG 2671
            E+TKPGLEPYLGLHYPATD+PQAARFLF+KNK+RMICDCRAKHV V+QDEKLPF+LTLCG
Sbjct: 255  EITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCG 314

Query: 2670 STLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRN-SVKSKKLWGLVVCHNTS 2494
            STLRAPH CHLQYMENMNSIASLVMAVV+ND DE  ESSD + S K K+LWGLVVCHNT+
Sbjct: 315  STLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVCHNTT 374

Query: 2493 PRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNIXXXXXXXXXXXXXDAPLGIVSQ 2314
            PRFVPFPLRYACEFLAQVFAIHV+KELELENQ +EKNI             DAPLGIVSQ
Sbjct: 375  PRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQ 434

Query: 2313 SPNMMDLVKCDGAALLFKNKVYRLGATPSDYQLQDIVSWLMEYHSDSTGLSTDSLYDAGF 2134
            SPN+MDLVKCDGAALL+KNK++RLG  PSD+QLQDIVSWL EYH+DSTGLSTDSLYDAGF
Sbjct: 435  SPNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLQDIVSWLCEYHTDSTGLSTDSLYDAGF 494

Query: 2133 PGALALGDVVCGMAVVKITSRDMLFWFRSHAAGHIRWGGAKHEPDEKDDGRKMHPRSSFK 1954
            PGALALGD VCGMA V+I+ +D LFWFRSH A  +RWGGAKHEP EKDDGRKMHPRSSFK
Sbjct: 495  PGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFK 554

Query: 1953 AFLEVVKTRSSTWKDFEMDAIHSLQLILRKALSDEKSMVPKSDEIRSNTDVIHSKLNDLK 1774
            AFLEVVKTRS  WKD+EMDAIHSLQLILR A  D       ++ + SNT+ I+ KLNDLK
Sbjct: 555  AFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKD-------AEVVNSNTNSIYKKLNDLK 607

Query: 1773 IEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDNAMGKHLLTL 1594
            I+G+QELE+VT+EMVRLIETA VPI AVD D  VNGWNTKIAELTGLPVD A+GKHLLTL
Sbjct: 608  IDGMQELESVTAEMVRLIETALVPILAVDVDGQVNGWNTKIAELTGLPVDEAIGKHLLTL 667

Query: 1593 VEDSSVDTVEKMLAFALQGKEEQGIQFQFKTHGSKEDSVPITLVVNACASRGLHDNVVGV 1414
            VEDSSVDTV KML  ALQGKEE+ ++F+ KTHG   DS PI+L+VNACAS+ + DNVVGV
Sbjct: 668  VEDSSVDTVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDVRDNVVGV 727

Query: 1413 CFVAQDVTSQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGW 1234
            CF+A D+T QK+IMDKFTRI+GDY+AI+QNP+PLIPPIFGTD+FGWCSEWN AMT+L+GW
Sbjct: 728  CFMAHDITGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTAMTKLTGW 787

Query: 1233 HREDVMNKMLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQTTEKICFSFFARDGKY 1054
             R+DVM+KMLLGE+FG Q +CC LK++EAFVN GVVLNNA+TGQ +EKI F FFAR GKY
Sbjct: 788  RRDDVMDKMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAITGQESEKIPFGFFARYGKY 847

Query: 1053 VECLLCASKKLDGEGTVTGIFCFXXXXXXXXXXXLHIQRLTEQTAVKRLKTLAYLRRQAK 874
            VECLLC SK+LD EG VTG+FCF           L++QRL+EQTA+KRLK LAY+RRQ +
Sbjct: 848  VECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKVLAYIRRQIR 907

Query: 873  NPLCGIDFIREKLEDIGLGEEQTKLLRTSVHCQRQLNKXXXXXXXXXXXDGYLDLEMSEF 694
            NPL GI F R+ LE   LGEEQ  +L TS  CQRQLNK           DGYLDLEM EF
Sbjct: 908  NPLSGIIFSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYLDLEMLEF 967

Query: 693  RLHDVYVASRSQVLMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQQVLADFMSVCVNLTP 514
            +LH+V VAS SQV+M+SNGK I + ++  E++++ETLYGDS RLQQVLA+F+ V VN TP
Sbjct: 968  KLHEVLVASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNATP 1027

Query: 513  VGGHLGIIVTLTKDNLGQSVQLVHLEFRITHAGAGVPEDLLSQMFGSDSETSEEGISLLI 334
             GG L I   LTKD +G+SVQL  LEFRI H G GVPE+LL QMFGS+++ SEEGISLL+
Sbjct: 1028 SGGQLSISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMFGSEADASEEGISLLV 1087

Query: 333  SRKLVKLMNGDVHYLREAGKSTFIITVELAAAS 235
            SRKLVKLMNG+V YLREAG+STFII+VELA A+
Sbjct: 1088 SRKLVKLMNGEVQYLREAGQSTFIISVELAVAT 1120