BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001200
         (341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   167   6e-40
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   114   8e-24
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   113   1e-23
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   113   2e-23
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   113   2e-23

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  167 bits (424), Expect = 6e-40
 Identities = 82/113 (72%), Positives = 96/113 (84%)
 Frame = -1

Query: 341 RTHDGKFYTLNDVRHVPLMTKNLISLSILDNKGFSFQGEGGVLHVCKGSNVILKGVKRGT 162
           RTHDG F TLN+VRHVPLMTKNLISLS+LD+KGFS+ G+ GVL V KGSN+ILKGV RGT
Sbjct: 326 RTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGT 385

Query: 161 LYLLQGSTLSGSAAVASSEIDKENMTRFWHMRLGHMSVRGMQILLKADLLCGY 3
           LY LQGST++GSA VASSE  +++MT+ WH+RLGHM  RGMQIL K DLL G+
Sbjct: 386 LYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGH 438


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  114 bits (285), Expect = 8e-24
 Identities = 60/113 (53%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
 Frame = -1

Query: 341 RTHDGKFYTLNDVRHVPLMTKNLISLSILDNKGFSFQGEGGVLHVCKGSNVILKG-VKRG 165
           +THDG   TL DVRH+P M +NLISLS LD +G+ + G GGV+ V KGS V + G +   
Sbjct: 340 KTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSA 399

Query: 164 TLYLLQGSTLSGSAAVASSEIDKENMTRFWHMRLGHMSVRGMQILLKADLLCG 6
            LY+L+GSTL GS   A+   D+ N T  WHMRLGHMS  GM  L+K +LL G
Sbjct: 400 NLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDG 452


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1156

 Score =  113 bits (283), Expect = 1e-23
 Identities = 60/113 (53%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
 Frame = -1

Query: 341 RTHDGKFYTLNDVRHVPLMTKNLISLSILDNKGFSFQGEGGVLHVCKGSNVILKGVKRGT 162
           +THDG   TL DVRH+P M +NLISLS LD +G+ + G GGV+ V KGS V + G    T
Sbjct: 280 KTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNST 339

Query: 161 -LYLLQGSTLSGSAAVASSEIDKENMTRFWHMRLGHMSVRGMQILLKADLLCG 6
            LY+L+GSTL GS   A+   D+ + T  WHMRLGHMS  GM  L+K +LL G
Sbjct: 340 NLYVLRGSTLHGSITAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDG 392


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group] gi|22655747|gb|AAN04164.1| Putative
           retrotransposon protein [Oryza sativa Japonica Group]
           gi|31431214|gb|AAP53029.1| retrotransposon protein,
           putative, Ty1-copia subclass, expressed [Oryza sativa
           Japonica Group]
          Length = 1229

 Score =  113 bits (282), Expect = 2e-23
 Identities = 59/113 (52%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
 Frame = -1

Query: 341 RTHDGKFYTLNDVRHVPLMTKNLISLSILDNKGFSFQGEGGVLHVCKGSNVILKG-VKRG 165
           +THDG   TL DVRH+P M +NLISLS LD +G+ + G GGV+ V KGS V + G +   
Sbjct: 337 KTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSA 396

Query: 164 TLYLLQGSTLSGSAAVASSEIDKENMTRFWHMRLGHMSVRGMQILLKADLLCG 6
            LY+L+GSTL GS   A+   D+ + T  WHMRLGHMS  GM  L+K +LL G
Sbjct: 397 NLYVLRGSTLHGSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDG 449


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|53370655|gb|AAU89150.1| integrase core domain
           containing protein [Oryza sativa Japonica Group]
           gi|108710286|gb|ABF98081.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1322

 Score =  113 bits (282), Expect = 2e-23
 Identities = 59/113 (52%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
 Frame = -1

Query: 341 RTHDGKFYTLNDVRHVPLMTKNLISLSILDNKGFSFQGEGGVLHVCKGSNVILKG-VKRG 165
           +THDG   TL DVRH+P M +NLISLS LD +G+ + G GGV+ V KGS V + G +   
Sbjct: 340 KTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSA 399

Query: 164 TLYLLQGSTLSGSAAVASSEIDKENMTRFWHMRLGHMSVRGMQILLKADLLCG 6
            LY+L+GSTL GS   A+   D+ + T  WHMRLGHMS  GM  L+K +LL G
Sbjct: 400 NLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDG 452