BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001175
         (3238 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...  1538   0.0  
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...  1531   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1519   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1518   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1505   0.0  

>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score = 1538 bits (3983), Expect = 0.0
 Identities = 738/1065 (69%), Positives = 880/1065 (82%), Gaps = 5/1065 (0%)
 Frame = -1

Query: 3181 MGSEESERNVVVTQISVGGFDDSITAKTLLDYFEENVGIVWRCRLKTSSTPFDVYPEFAI 3002
            M +E S +  VVTQ+SVGGFD  +TAK LL+Y +  +G+VWRCRLKTS TP + YP F I
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3001 -DTTKIKRLNSYDNVIPHAFVHFAIPDSARSALDAAGRGELILEYNPLKIRLGPENPHRM 2825
             D TKI+R   Y  V+PHAFVHFA+P SA  A++A+GR EL L    LK+ LGP+NP  +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 2824 NQSRRDKAPFKLPDVIIEIGSWVSKDKFFVGWRGPPTGVEFLVDPFDGTCKFVFTMDTAF 2645
            NQ RR   PFKL DV  EIG+ VS+D+FFVGWRGPP+GV+FLVDPFDGTCKF F+ +TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 2644 SDQGTRNHAVIKCNFKVEFLVRDIQWMKNYSDTSHLVILLHLESSPKLYYRTADDDIEES 2465
            S + T  HAVIKC+FKVEFLVRDI  +  Y++TS LV+LL L S+P ++YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 2464 VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILIQPRHGLKLRKAMQYLKEQRVSI---R 2294
            VPFD+LDDDDPWIRTTDFTASGAIGRC+ YR+ I PRHG KLRKA++YLKE+RV +    
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 2293 DLQTQLTIKDEPDFGMPVTDPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNL 2114
            + + ++ I DEPDFGMP++DP FCIH KEGI F+ LFLVNAV+HKGIF+Q+ LS+ FF+L
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 2113 LKSQKEEVNIAALKHICSTKRPYFNACERMKTVQDWLLKNPKLLRT-RELDDIVEVRRLI 1937
            L++Q  EVN++ALKHIC+ +RP FNA  R+K VQ+WLLKNP L +  ++L D+VE+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1936 ITPTRAYCLPPEVELSNRVLRHYKLVADRFLRVTFMDDGMQTLNKNVITYYPAPIVRDIT 1757
            ITPT+AYCLPPEVELSNRVLR YK VADRFLRVTFMD+G+Q +N NV+ YY APIVRDIT
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 1756 SNANAQKTSVFKRVKDITIDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVFDVLS 1577
            SN+  QKT +FKRV+ I  +GF+LCGR+YSFLAFSANQLRD+SAWFF+ ++N SV DV S
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1576 WMGHFTNKNVAKCAARMGLCFSSTYATVDVPHCNVDFELADIKRNDYDFSDGIGKISHDL 1397
            WMG FTN+N+AKCAARMG CFSSTYAT++VP   V+ +L DI+RN Y FSDGIG I+ DL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 1396 AMEVAERLHLNVSPPCAYQIRYGGCKGVVACWPASKSGIRLSLRPSMNKFESNHTILEIC 1217
            A EVAE+L L++ PPCAYQIRY GCKGVVACWP    G+RLSLRPSMNKF+SNHT LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 1216 SWPRFQPGFLNRQIITLLSALNVGDKVFWKMQESMISKLNQMLVSVDIAFDVVTSSCAEE 1037
            SW RFQPGFLNRQIITLLS LNV D VFWKMQE+M+SKLNQM V+ D+AFDV+T+SCA++
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 1036 GNTAAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILE 857
            GN AAIMLSAGFKP  EPHLRGMLT +RAAQ  DLREK RI+V SGRWLMGCLDEL +LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 856  QGQCFVQVSNPSLENCFVKHGLEFSETKRDLQVIKGLVVMAKNPCLHPGDVRILEAVDVP 677
            QGQCF+QVSN SLE CF+KHG +FSE +++LQVIKG VV+AKNPCLHPGDVR+LEAVDVP
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 676  SLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPGKVSWPAMDYDPAEAK 497
             LHHLYDCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIPP K SW  M YD AEAK
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 496  EMLREVKLKHVADFFARNMVNESLGTICNGHVVHADSSEYGAMDENCIVLADLAAKAVDF 317
             + R V  + + +FFA+NMVN++LG ICN HVVHAD SEYGA D+NC+ LA+LAA AVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 316  PKTGKIVNMPSHLRPKLYPDFMGKEDFQSYKSTKILGRLYRKIKDDYDIDLTDSMEINFL 137
            PKTGK+V+MP +L+PK+YPDFMGKE++QSYKS KILGRLYR+IKD YD D+  S E+N +
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 136  PREIPYDRDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKE 2
            P +IPYD DLE  G++ +I+DAW  KCSYD QLN LL QYKV +E
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKRE 1065


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score = 1531 bits (3963), Expect = 0.0
 Identities = 744/1063 (69%), Positives = 866/1063 (81%), Gaps = 3/1063 (0%)
 Frame = -1

Query: 3181 MGSEESERNVVVTQISVGGFDDSITAKTLLDYFEENVGIVWRCRLKTSSTPFDVYPEFAI 3002
            M +E S +  VVTQ+S+GGFD  +TAK LL+Y E  +G+VWRCRLKTS TP + YP F I
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 3001 -DTTKIKRLNSYDNVIPHAFVHFAIPDSARSALDAAGRGELILEYNPLKIRLGPENPHRM 2825
             D TKI R   Y  V PHAFVHFA+P SA  A+DAA R EL L    LK  LGPENP  +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 2824 NQSRRDKAPFKLPDVIIEIGSWVSKDKFFVGWRGPPTGVEFLVDPFDGTCKFVFTMDTAF 2645
            NQ RR   PFKL  V +EIG+ VS+D+FFVGWRGPPTGV+FLVDPFDGTC+F F+ +TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 2644 SDQGTRNHAVIKCNFKVEFLVRDIQWMKNYSDTSHLVILLHLESSPKLYYRTADDDIEES 2465
            S + T  HAVIKC+FKVEFLVRDI  +K Y++TS LV+LL L S+P+++YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 2464 VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILIQPRHGLKLRKAMQYLKEQRVSIRDLQ 2285
            VPFD+LDDDDPWIRTTDFTASGAIGRC+ YR+ I PRHG KLRKA+ +LKE+RV    L+
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 2284 TQLTIKDEPDFGMPVTDPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLLKS 2105
              + I+DEPDFGMP+TDP FCIH KEGI F  LFLVNAV+HKGIF+Q+ LS+ FF+LL++
Sbjct: 301  RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 360

Query: 2104 QKEEVNIAALKHICSTKRPYFNACERMKTVQDWLLKNPKLLRT-RELDDIVEVRRLIITP 1928
            Q  EVN+AALKHI   +RP F+A +++K  Q+WLLKNPK  +  ++LDDI E+RRL+ITP
Sbjct: 361  QPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVITP 420

Query: 1927 TRAYCLPPEVELSNRVLRHYKLVADRFLRVTFMDDGMQTLNKNVITYYPAPIVRDITSNA 1748
            T+AYCLPPEVELSNRVLR YK VADRFLRVTFMD+G+QT+N N + Y+ APIVR ITS +
Sbjct: 421  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYS 480

Query: 1747 NAQKTSVFKRVKDITIDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVFDVLSWMG 1568
              QKT +FKRV+ I  +GF+LCGR+YSFLAFS+NQLRDRSAWFFA D+N +V  + SWMG
Sbjct: 481  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMG 540

Query: 1567 HFTNKNVAKCAARMGLCFSSTYATVDVPHCNVDFELADIKRNDYDFSDGIGKISHDLAME 1388
             FTNKN+AKCAARMG CFSSTYAT++VP   V+ +L DIKRN YDFSDGIG I+ DLA E
Sbjct: 541  KFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE 600

Query: 1387 VAERLHLNVSPPCAYQIRYGGCKGVVACWPASKSGIRLSLRPSMNKFESNHTILEICSWP 1208
            VAE+L  +  PPCAYQIRY GCKGVVACWP    GIRLSLR SMNKF+SNHTILEICSW 
Sbjct: 601  VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWT 660

Query: 1207 RFQPGFLNRQIITLLSALNVGDKVFWKMQESMISKLNQMLVSVDIAFDVVTSSCAEEGNT 1028
            RFQPGFLNRQIITLLSALNV D VFWKMQE M+SKLNQMLV  D+AFDV+T+SCAE+GN 
Sbjct: 661  RFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNV 720

Query: 1027 AAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQGQ 848
            AAIMLSAGFKP  EPHLRGMLT +RAAQ   LREKARI+V SGRWLMGCLDEL +LEQGQ
Sbjct: 721  AAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQ 780

Query: 847  CFVQVSNPSLENCFVKHGLEFSETKRDLQVIKGLVVMAKNPCLHPGDVRILEAVDVPSLH 668
            CF+QVSN  LENCFVKHG +FSETK++LQV+KG VV+AKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLH 840

Query: 667  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPGKVSWPAMDYDPAEAKEML 488
            HLYDCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPP K SW  M YD AEAK++ 
Sbjct: 841  HLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT 900

Query: 487  REVKLKHVADFFARNMVNESLGTICNGHVVHADSSEYGAMDENCIVLADLAAKAVDFPKT 308
            R V  + + +FFA+NM NE+LG ICN HVV AD SEYGA+DE C+ LA+LAA AVDFPKT
Sbjct: 901  RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKT 960

Query: 307  GKIVNMPSHLRPKLYPDFMGKEDFQSYKSTKILGRLYRKIKDDY-DIDLTDSMEINFLPR 131
            GKIV+MPS L+PK+YPDFMGKE+ QSYKS KILGRLYR+IKD Y D D+  S E+NF+  
Sbjct: 961  GKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFVRG 1020

Query: 130  EIPYDRDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKE 2
            +IPYD DLE  G+  FI+DAW  KCSYD QLN LL QYKV +E
Sbjct: 1021 DIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKRE 1063


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1519 bits (3934), Expect = 0.0
 Identities = 746/1064 (70%), Positives = 873/1064 (82%), Gaps = 4/1064 (0%)
 Frame = -1

Query: 3181 MGSEESERNVVVTQISVGGFDDSITAKTLLDYFEENVGIVWRCRLKTSSTPFDVYPEFAI 3002
            M SE SE+++VVTQIS+GGFD  +TA  L  Y E+ +G V RCRLKTSSTP + YP+F I
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 3001 -DTTKIKRLNSYDNVIPHAFVHFAIPDSARSALDAAGRGELILEYNPLKIRLGPENPHRM 2825
             DT KI+R   Y  V PHAFVHF  P++A  ALDAAG+ EL L   PLK+ LGPE P  +
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 2824 NQSRRDKAPFKLPDVIIEIGSWVSKDKFFVGWRGPPTGVEFLVDPFDGTCKFVFTMDTAF 2645
            NQ RR   PFK PDV +EIG  VS+D++F GWRGP +GV+FLVDPFDGTCKF+FT DTAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 2644 SDQGTRNHAVIKCNFKVEFLVRDIQWMKNYSDTSHLVILLHLESSPKLYYRTADDDIEES 2465
            S +G   HAVIKCNFKVEFLVR+I  ++   D S L++LL L SSP +YYRTADDDIEE+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 2464 VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILIQPRHGLKLRKAMQYLKEQRVSIRD-- 2291
            VPFD+LDDDDPWIRTTDFT SGAIGRCN YRI I PR+G KL+KAM YL+ +RV++ +  
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 2290 LQTQLTIKDEPDFGMPVTDPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLL 2111
             + QL ++DEPDFG+P++DP FCI  KEGI+F+ +FLVNAV+HKGI +Q+ LSD+FF+LL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 2110 KSQKEEVNIAALKHICSTKRPYFNACERMKTVQDWLLKNPKLLRT-RELDDIVEVRRLII 1934
            +SQ++++NIAALKHICS + P F+A +R+K V  WLLKNPKLL++ +ELDDIVEVRRL+I
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 1933 TPTRAYCLPPEVELSNRVLRHYKLVADRFLRVTFMDDGMQTLNKNVITYYPAPIVRDITS 1754
            TP++AYCLPPEVELSNRVLR+YK V+DRFLRVTFMD+GMQT+N NV+ YY APIV+ ITS
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 1753 NANAQKTSVFKRVKDITIDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVFDVLSW 1574
            N+  QKT VFKRVK I  DGF+LCGRKYSFLAFS+NQLRDRSAWFFA D+ TSV  + SW
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 1573 MGHFTNKNVAKCAARMGLCFSSTYATVDVPHCNVDFELADIKRNDYDFSDGIGKISHDLA 1394
            MG FTN+NVAKCAARMG CFSSTYATV+VP   V  EL DIKRN YDFSDGIGKI  DLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 1393 MEVAERLHLNVSPPCAYQIRYGGCKGVVACWPASKSGIRLSLRPSMNKFESNHTILEICS 1214
            MEVAE+L L    P AYQIRY GCKGVVACWP+   GIRLS RPSMNKF S+HTILEICS
Sbjct: 600  MEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658

Query: 1213 WPRFQPGFLNRQIITLLSALNVGDKVFWKMQESMISKLNQMLVSVDIAFDVVTSSCAEEG 1034
            W RFQPGFLNRQI+TLLSALNV DK+FWKMQESMISKLNQML   D+AFDV+ +SCAE+G
Sbjct: 659  WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718

Query: 1033 NTAAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQ 854
            NTAAIMLSAGFKP  EPHL+GMLT IRAAQF  LREKARI+V SGRWLMGCLDEL +LEQ
Sbjct: 719  NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 853  GQCFVQVSNPSLENCFVKHGLEFSETKRDLQVIKGLVVMAKNPCLHPGDVRILEAVDVPS 674
            GQCF+QVS+PSLENCF+KHG  FS  K +L+VIKG+V +AKNPCLHPGDVRILEAVD P 
Sbjct: 779  GQCFIQVSSPSLENCFLKHGSRFSAQK-NLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 673  LHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPGKVSWPAMDYDPAEAKE 494
            L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPP K SWP M YD AEAK 
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 493  MLREVKLKHVADFFARNMVNESLGTICNGHVVHADSSEYGAMDENCIVLADLAAKAVDFP 314
            + REV    + DFF +NMVNE+LG ICN HVVHAD SEYGA+DE C+ LA+ AA AVDFP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 313  KTGKIVNMPSHLRPKLYPDFMGKEDFQSYKSTKILGRLYRKIKDDYDIDLTDSMEINFLP 134
            KTGK+V +P +L+PK+YPDFMGKE+FQ+Y+S KILG++YR+IKD Y+ D+++S E  F  
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 133  REIPYDRDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKE 2
             ++P+D DL  PGSA FINDAW  KCSYD QLN LLGQYKV +E
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKRE 1061


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1518 bits (3929), Expect = 0.0
 Identities = 736/1068 (68%), Positives = 862/1068 (80%), Gaps = 8/1068 (0%)
 Frame = -1

Query: 3181 MGSEESERNVVVTQISVGGFDDSITAKTLLDYFEENVGIVWRCRLKTSSTPFDVYPEFAI 3002
            M ++  E+  VVTQ+S GGFD  +TA+ L+ Y +  +G VWRCRLKTS TP + YP F I
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 3001 -DTTKIKRLNSYDNVIPHAFVHFAIPDSARSALDAAGRGELILEYNPLKIRLGPENPHRM 2825
             DT  I+R+++Y  V PHAFVHFA PDSA  A +AAG  EL     P+K+ LGPENP  +
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 2824 NQSRRDKAPFKLPDVIIEIGSWVSKDKFFVGWRGPPTGVEFLVDPFDGTCKFVFTMDTAF 2645
            NQ RR   PFKL DV +EIG+ VS+D+F VGWRGPP+GV+FLVDPFDG CKF FT DTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 2644 SDQGTRNHAVIKCNFKVEFLVRDIQWMKNYSDTSHLVILLHLESSPKLYYRTADDDIEES 2465
            S +GT  HAVI+C+FK+EFLVRDI  +K Y+DTS LVILL L S+P ++YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 2464 VPFDILDDDDPWIRTTDFTASGAIGRCNIYRILIQPRHGLKLRKAMQYLKEQRVSIRDLQ 2285
            VPFD+LDDDDPWIRTTDFT SGAIGRCN YR+ I PRHG KL++A+ +L+E+RV    L+
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 2284 TQLTIKDEPDFGMPVTDPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLLKS 2105
              L +  EP++ MP++DP FCIH +EG++F  +FLVNAV+HKGIF+Q+ LSD FF+LL++
Sbjct: 301  RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRN 360

Query: 2104 QKEEVNIAALKHICSTKRPYFNACERMKTVQDWLLKNPKLLRT-RELDDIVEVRRLIITP 1928
            Q  +VNIAAL+HICS K P F+A +R+K VQ WLLKNPKL R+ ++LDDIVE+RRL ITP
Sbjct: 361  QPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAITP 420

Query: 1927 TRAYCLPPEVELSNRVLRHYKLVADRFLRVTFMDDGMQTLNKNVITYYPAPIVRDITSNA 1748
            TRAYCLPPEVELSNRVLR YK +AD+FLRVTFMD+G+QT+N N +TYY APIVRDITSN+
Sbjct: 421  TRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITSNS 480

Query: 1747 NAQKTSVFKRVKDITIDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVFDVLSWMG 1568
             +QKT +FKRVK I  DGF+LCGRKYSFLAFS+NQLRDRSAWFFA D  TSV  + +WMG
Sbjct: 481  FSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNWMG 540

Query: 1567 HFTNKNVAKCAARMGLCFSSTYATVDVPHCNVDFELADIKRNDYDFSDGIGKISHDLAME 1388
             FTN+N+AKCAARMG CFSSTYATV+VP      +L DI+RN+Y FSDGIG I+ DLA E
Sbjct: 541  KFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLAKE 600

Query: 1387 VAERLHLNVSPPCAYQIRYGGCKGVVACWPASKSGIRLSLRPSMNKFESNHTILEICSWP 1208
            VAE+L L V+PPCAYQIRY GCKGVVACWPA   GIRLSLR SMNKF SNHT LEICSW 
Sbjct: 601  VAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWT 660

Query: 1207 RFQPGFLNRQIITLLSALNVGDKVFWKMQESMISKLNQMLVSVDIAFDVVTSSCAEEGNT 1028
            RFQPGFLNRQIITLLS L+V D++FWKMQ  M+SKLNQM +  D+AFDVVT+SCAE+GNT
Sbjct: 661  RFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNT 720

Query: 1027 AAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQGQ 848
            AAIMLSAGF P  EPHL GMLT IRAAQ   LREK RI+V SGRWLMGCLDEL +LE GQ
Sbjct: 721  AAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQ 780

Query: 847  CFVQVSNPSLENCFVKHGLEFSETKRDLQVIKGLVVMAKNPCLHPGDVRILEAVDVPSLH 668
            CF+QVSNPSLE+CF KHG  FSE+K+ LQV+KG VV+AKNPCLHPGD+RILEAVD P LH
Sbjct: 781  CFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELH 840

Query: 667  HLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPGKVSWPAMDYDPAEAKEML 488
            HL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP K SW  M YD AEAK++ 
Sbjct: 841  HLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLN 900

Query: 487  REVKLKHVADFFARNMVNESLGTICNGHVVHADSSEYGAMDENCIVLADLAAKAVDFPKT 308
            R V  + + DFFA+NMVNE+LG ICN HVVHAD SEYGA+DENCI LA+LAA AVDFPKT
Sbjct: 901  RPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKT 960

Query: 307  GKIVNMPSHLRPKLYPDFMGKEDFQSYKSTKILGRLYRKIKDDY------DIDLTDSMEI 146
            GK+V MP HL+PKLYPDFMGKED+QSY S KILGRLYR++KDDY      D D   S E+
Sbjct: 961  GKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSSEL 1020

Query: 145  NFLPREIPYDRDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKE 2
            N +  +IPYD+DLE  GS+ +I DAW  KCSYD QL  LL QYKV +E
Sbjct: 1021 NLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKRE 1068


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1505 bits (3896), Expect = 0.0
 Identities = 732/1063 (68%), Positives = 867/1063 (81%), Gaps = 3/1063 (0%)
 Frame = -1

Query: 3181 MGSEESERNVVVTQISVGGFDDSITAKTLLDYFEENVGIVWRCRLKTSSTPFDVYPEFAI 3002
            MGSE SE+++VVTQISVGGFD+ + AK L +Y EE VG VWRCRLK SSTP D YP F +
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 3001 DTTKIKRLNSYDNVIPHAFVHFAIPDSARSALDAAGRGELILEYNPLKIRLGPENPHRMN 2822
            D  +++R+  Y+ V+PHAFVHFA  +SA+ AL AAG  ELIL   PL + LGPENP+R+N
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 2821 QSRRDKAPFKLPDVIIEIGSWVSKDKFFVGWRGPPTGVEFLVDPFDGTCKFVFTMDTAFS 2642
            Q RR   PFK  DV IE+G  VSKD F VGWRGP TGV+FLVDPF+G CK +FT DTAFS
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 2641 DQGTRNHAVIKCNFKVEFLVRDIQWMKNYSDTSHLVILLHLESSPKLYYRTADDDIEESV 2462
             +G   HA+IKCNFK+EFLVR+I  +K   D + LVILL L SSP ++YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 2461 PFDILDDDDPWIRTTDFTASGAIGRCNIYRILIQPRHGLKLRKAMQYLKEQRVSIRDL-- 2288
             FD+LDDDD WIRTTD T SGAIGRCN YRI I+PR+G    KAM Y    RV + ++  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 2287 QTQLTIKDEPDFGMPVTDPLFCIHFKEGINFKTLFLVNAVLHKGIFSQYTLSDQFFNLLK 2108
            +  L ++DEPDFG+ ++DP FC    EGI+FK +FLVNAVLHKGI +Q+ ++++FF LL+
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 2107 SQKEEVNIAALKHICSTKRPYFNACERMKTVQDWLLKNPKLL-RTRELDDIVEVRRLIIT 1931
            S +EEVN+AALKH+ S K P  +A +++  ++ WLLKNPKLL RT ELDDIVEVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1930 PTRAYCLPPEVELSNRVLRHYKLVADRFLRVTFMDDGMQTLNKNVITYYPAPIVRDITSN 1751
            PT+AYCLPP VELSNRVLR+YK VADRFLRVTFMD+GM+ LN+NV+TYY A IVR+ITSN
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1750 ANAQKTSVFKRVKDITIDGFHLCGRKYSFLAFSANQLRDRSAWFFAGDQNTSVFDVLSWM 1571
            +N Q+T++F+RVK I   GFHLCGRKYSFLAFSANQLRDRSAWFFA D    V  ++SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1570 GHFTNKNVAKCAARMGLCFSSTYATVDVPHCNVDFELADIKRNDYDFSDGIGKISHDLAM 1391
            G F+N+NVAKCAARMG CFSSTYATV+VP   V+ EL DI+RN Y FSDGIG IS DLA+
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 1390 EVAERLHLNVSPPCAYQIRYGGCKGVVACWPASKSGIRLSLRPSMNKFESNHTILEICSW 1211
            EVAE+LHL+V+PP AYQIRY GCKGVVACWP    GIRLSLRPSM KF+SNHTILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 1210 PRFQPGFLNRQIITLLSALNVGDKVFWKMQESMISKLNQMLVSVDIAFDVVTSSCAEEGN 1031
             RFQPGFLNRQI+TLLS+L+V D +FW+MQ+ MIS L++MLV  D+AFDV+T+SCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 1030 TAAIMLSAGFKPHNEPHLRGMLTSIRAAQFGDLREKARIYVSSGRWLMGCLDELAILEQG 851
            TAAIMLSAGFKP +EPHLRGML+SIRA+Q GDLR KARI+V SGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 850  QCFVQVSNPSLENCFVKHGLEFSETKRDLQVIKGLVVMAKNPCLHPGDVRILEAVDVPSL 671
            QCF+QVS+PSLENCF+KHG +FS+ K++LQV+KGLVV+AKNPCLHPGDVRILEAVDVP L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 670  HHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPGKVSWPAMDYDPAEAKEM 491
            HHLYDCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPP K SW  M+Y+PAE K+M
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 490  LREVKLKHVADFFARNMVNESLGTICNGHVVHADSSEYGAMDENCIVLADLAAKAVDFPK 311
             R+V    + DFF++NMV ESLG ICN HVVHAD SE+GA+DE C+ LA+LAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 310  TGKIVNMPSHLRPKLYPDFMGKEDFQSYKSTKILGRLYRKIKDDYDIDLTDSMEINFLPR 131
            TGK+V MP  L+PK+YPDFMGKE+FQSYKS KILG+LYR++KD  D +   S  +  +P 
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 130  EIPYDRDLETPGSATFINDAWGIKCSYDEQLNSLLGQYKVNKE 2
            +IPYD  LE PGS  FI+DAW  KCSYD QL+ LLGQYKVN+E
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNRE 1062