BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001043
         (2066 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   607   e-171
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   592   e-166
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   591   e-166
ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|2...   579   e-162
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-...   573   e-161

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  607 bits (1564), Expect = e-171
 Identities = 323/512 (63%), Positives = 377/512 (73%), Gaps = 2/512 (0%)
 Frame = -3

Query: 1941 MGVVTVSSSAA--RTPLGSSTRLLKYSFPTKRTSISMFKTDKTKNKALVAPKDAVSSAIE 1768
            MGVVTVSSSA+  RTP G + +   +  P +R  +  FK DK KN ALV P + +   IE
Sbjct: 1    MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 1767 KSKGKRKTLRQTKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKRSPAPELYDGQD 1588
             SK  +K LR+  KP +RV+A S  E   C ++LDY EAAAKLENIYK SPA ++ + +D
Sbjct: 61   TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 1587 KDHGAXXXXXXXXXXXXXXXXTANKCIDNVVRSQKTDSKRLNLKERIALRINXXXXXXXX 1408
             +                      +  DNVVR      KRL+L++RIAL           
Sbjct: 121  LERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALS-KMKQEKAVA 179

Query: 1407 XXXRKLTGENEIDKINRLVREYSVSTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMKAI 1228
               +K   +NE + I+ LVREYS STDLVSLDWKKMKIPPVL  SEH WLFKLMQPMK +
Sbjct: 180  SIQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGL 239

Query: 1227 LLVKDNLRNDLGREPTDGELAQATGMNVVQLRKQIAVGQAARSKLIKHNLRFILFVMNKY 1048
            L VKDNL+ DLGREPTDGELA+A  M+ VQ+R+ + VGQAAR+KLIKHNLR +LFV+NKY
Sbjct: 240  LEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKY 299

Query: 1047 FQEFANGPKFQDLCQAGVKGLITAIDRFEPKRRLRLSTYGLFWIRHAIIRSMTLASFTKV 868
            FQEFANGPKFQDLCQAGVKGLITAIDRFEPKR  RLSTYGLFWIRHAI+RSMTL+SFT+V
Sbjct: 300  FQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRV 359

Query: 867  SFGLESVRADIKKAKLQLMFELDREPTEEEITEKVGISMERYNEVMRASKPVASLHARHS 688
            SFGLESVR +I++AKL+L+F+L R PTEEEI EKVGIS ERY+EVMRASK V SLHARH+
Sbjct: 360  SFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHA 419

Query: 687  VTQEEFISGITDFEGAGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTL 508
             TQEE+I+GITD EG GGD+ RQ A            LKPKESLV+RQRYGLDGKGDRTL
Sbjct: 420  TTQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTL 479

Query: 507  GEIGGNLNISREMVRKHEVKAFMKLKHPARMD 412
            GEI GNL+ISREMVRKHEVKA MKLKHPAR+D
Sbjct: 480  GEIAGNLSISREMVRKHEVKALMKLKHPARVD 511


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  592 bits (1525), Expect = e-166
 Identities = 322/516 (62%), Positives = 381/516 (73%), Gaps = 6/516 (1%)
 Frame = -3

Query: 1941 MGVVTVSSSAARTPLGSSTRLLKYSFPTKRTSISMFKTDKTKNKALVAPKDAVSSAIEKS 1762
            MGVVTVSS+AARTP     +   +S   KR SI  FK DK  N  LV+P + V+  +E +
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 1761 KGKRKTLRQTKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKRSPAPELYDGQDKD 1582
              ++K    T KPL+RV+A  + EA  C LDLDY EAAAKLENI+K SP  E  D + KD
Sbjct: 61   NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 1581 HGAXXXXXXXXXXXXXXXXTANKCIDNVVRSQKTDSKRLNLKERIALRI------NXXXX 1420
              +                 AN+  D +VR+Q    KRL+L +RIAL+       N    
Sbjct: 121  GRSKRGQKRSKKS-------ANRPGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGK 173

Query: 1419 XXXXXXXRKLTGENEIDKINRLVREYSVSTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQP 1240
                   +K T +NE D+I+RLVR+YS STDLVSLDWKKMKIPPVL SSEHT LFKL+QP
Sbjct: 174  AVPSLRKQKET-KNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQP 232

Query: 1239 MKAILLVKDNLRNDLGREPTDGELAQATGMNVVQLRKQIAVGQAARSKLIKHNLRFILFV 1060
            MKA++ V++ L+  LGREPT+GELA AT MNV+Q+R+Q+ VG+AAR+KLIKHNLR +LFV
Sbjct: 233  MKALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFV 292

Query: 1059 MNKYFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRRLRLSTYGLFWIRHAIIRSMTLAS 880
            +NKYF++FA+GPKFQDLCQAGVKGLITAIDRFEPKR+ RLSTY LFWIRHAIIRSMTL+S
Sbjct: 293  INKYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSS 352

Query: 879  FTKVSFGLESVRADIKKAKLQLMFELDREPTEEEITEKVGISMERYNEVMRASKPVASLH 700
            FT+VSFGL+SVR +I++AKL+L+ EL R PTE EIT KVGIS ERY EVMRA+KPV SLH
Sbjct: 353  FTRVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLH 412

Query: 699  ARHSVTQEEFISGITDFEGAGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKG 520
            +RHS T EE I+GITD EG GGD RRQPA            LKPKESLVIRQRYGLDGKG
Sbjct: 413  SRHSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKG 472

Query: 519  DRTLGEIGGNLNISREMVRKHEVKAFMKLKHPARMD 412
            +RTLGEI GNLNISREMVRKHEVKA MKLKHPAR+D
Sbjct: 473  NRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 508


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  591 bits (1523), Expect = e-166
 Identities = 320/514 (62%), Positives = 379/514 (73%), Gaps = 4/514 (0%)
 Frame = -3

Query: 1941 MGVVTVSSSAARTPLGSSTRLLKYSFPTKRTSISMFKTDKTKNKALVAPKDAVSSAIEKS 1762
            MGVVTVSS+AARTP     +   +S   KR SI  FK DK  N  LV+P + V+  +E +
Sbjct: 1    MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 1761 KGKRKTLRQTKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKRSPAPELYDGQDKD 1582
              ++K    T KPL+RV+A  + EA  C LDLDY EAAAKLENI+K SP  E  D + KD
Sbjct: 61   NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKECKD 120

Query: 1581 HGAXXXXXXXXXXXXXXXXTANKCIDNVVRSQKTDSKRLNLKERIALRINXXXXXXXXXX 1402
              +                 AN+  D +VR+Q    KRL+L +RIAL+            
Sbjct: 121  GRSKRGQKRSKKS-------ANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLR 173

Query: 1401 XRKLT----GENEIDKINRLVREYSVSTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMK 1234
             +K T     E + D+I+RLVR+YS STDLVSLDWKKMKIPPVL SSEHT LFKL+QPMK
Sbjct: 174  KQKDTKNEADEIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMK 233

Query: 1233 AILLVKDNLRNDLGREPTDGELAQATGMNVVQLRKQIAVGQAARSKLIKHNLRFILFVMN 1054
            A++ V++ L+  LGREPT+GELA AT MNV+Q+R+Q+ VG+AAR+KLIKHNLR +LFV+N
Sbjct: 234  ALVEVQEELQKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVIN 293

Query: 1053 KYFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRRLRLSTYGLFWIRHAIIRSMTLASFT 874
            KYF++FA+GPKFQDLCQAGVKGLITAIDRFEPKR+ RLSTY LFWIRHAIIRSMTL+SFT
Sbjct: 294  KYFEDFASGPKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFT 353

Query: 873  KVSFGLESVRADIKKAKLQLMFELDREPTEEEITEKVGISMERYNEVMRASKPVASLHAR 694
            +VSFGL+SVR +I++AKL+L+ EL R PTE EIT KVGIS ERY EVMRA+KPV SLH+R
Sbjct: 354  RVSFGLDSVRVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSR 413

Query: 693  HSVTQEEFISGITDFEGAGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDR 514
            HS T EE I+GITD EG GGD RRQPA            LKPKESLVIRQRYGLDGKG+R
Sbjct: 414  HSTTSEELINGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNR 473

Query: 513  TLGEIGGNLNISREMVRKHEVKAFMKLKHPARMD 412
            TLGEI GNLNISREMVRKHEVKA MKLKHPAR+D
Sbjct: 474  TLGEIAGNLNISREMVRKHEVKALMKLKHPARVD 507


>ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|222834948|gb|EEE73397.1|
            predicted protein [Populus trichocarpa]
          Length = 512

 Score =  579 bits (1492), Expect = e-162
 Identities = 316/510 (61%), Positives = 378/510 (74%)
 Frame = -3

Query: 1941 MGVVTVSSSAARTPLGSSTRLLKYSFPTKRTSISMFKTDKTKNKALVAPKDAVSSAIEKS 1762
            MGVV+VSSSA+RTPLG ST+   Y    KR  I  FK DK+ N +LVAP + +   +E +
Sbjct: 1    MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETT 60

Query: 1761 KGKRKTLRQTKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKRSPAPELYDGQDKD 1582
            KGK++ L ++KK   R++A     +P C L +DY EAAAKLENIYK SP  +  D +D  
Sbjct: 61   KGKKR-LGKSKKSSNRLKAVRTEVSP-CTLLVDYNEAAAKLENIYKLSPGTDTSDVEDAS 118

Query: 1581 HGAXXXXXXXXXXXXXXXXTANKCIDNVVRSQKTDSKRLNLKERIALRINXXXXXXXXXX 1402
                               T ++    +VR++   +KRL+L++RI+LRI           
Sbjct: 119  GVIRRGRQRKRKISEGGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAG 178

Query: 1401 XRKLTGENEIDKINRLVREYSVSTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMKAILL 1222
             RK   +NE +KI+ LVREYS STDLVSLDWKKMKIPPVL+SSEH WLFKLMQPMKA+L 
Sbjct: 179  KRK-DRKNENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQ 237

Query: 1221 VKDNLRNDLGREPTDGELAQATGMNVVQLRKQIAVGQAARSKLIKHNLRFILFVMNKYFQ 1042
            VK++L+ +LG EPTD ELA+A  M+V+Q+RKQIAVG+AAR+KLIKHNLR +LFV+ KYFQ
Sbjct: 238  VKEHLQENLGGEPTDVELAKAINMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQ 297

Query: 1041 EFANGPKFQDLCQAGVKGLITAIDRFEPKRRLRLSTYGLFWIRHAIIRSMTLASFTKVSF 862
            +FANG KFQD CQAGVKGLITAIDRFEPKRR RLSTYGLFWIRHAIIRSMTL+SFT+VSF
Sbjct: 298  DFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSF 357

Query: 861  GLESVRADIKKAKLQLMFELDREPTEEEITEKVGISMERYNEVMRASKPVASLHARHSVT 682
            GLES+R++I+KAKL+L F+L R+P E+EI EKV IS ERY+EV RASKPV SLH+RH  T
Sbjct: 358  GLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTT 417

Query: 681  QEEFISGITDFEGAGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGE 502
            QEEFI GI D +  GGD RRQ A            LKPKESLV+RQRYGLDGKGDRTLGE
Sbjct: 418  QEEFIGGIADVD--GGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGE 475

Query: 501  IGGNLNISREMVRKHEVKAFMKLKHPARMD 412
            I GNLNISREMVRKHEVKA MKLKHP R+D
Sbjct: 476  IAGNLNISREMVRKHEVKALMKLKHPTRVD 505


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 512

 Score =  573 bits (1477), Expect = e-161
 Identities = 301/510 (59%), Positives = 377/510 (73%)
 Frame = -3

Query: 1941 MGVVTVSSSAARTPLGSSTRLLKYSFPTKRTSISMFKTDKTKNKALVAPKDAVSSAIEKS 1762
            MGV+TVS+SAARTPL  +TRL+ +    KR  I  FK +K+    LV+P++ +   +E +
Sbjct: 1    MGVITVSTSAARTPLRLNTRLISHQQVHKRPIILAFKGNKSNKTTLVSPQEKIPLPLETA 60

Query: 1761 KGKRKTLRQTKKPLERVQAFSVAEAPSCPLDLDYFEAAAKLENIYKRSPAPELYDGQDKD 1582
            K  +K + +T + L+RV+A S  E   C LD+DY EAAAKLENIYK SP  +  + +D D
Sbjct: 61   KKHQKRVGKTSESLKRVRAVSTVETSPCTLDVDYNEAAAKLENIYKLSPVSDTCNVEDID 120

Query: 1581 HGAXXXXXXXXXXXXXXXXTANKCIDNVVRSQKTDSKRLNLKERIALRINXXXXXXXXXX 1402
              +                    C DNVVR+Q   +KRL+L +RIAL+ N          
Sbjct: 121  --SKIERVLRRRKKVSEERDDGNC-DNVVRNQNKKAKRLSLDKRIALK-NNAKEEVIDQT 176

Query: 1401 XRKLTGENEIDKINRLVREYSVSTDLVSLDWKKMKIPPVLSSSEHTWLFKLMQPMKAILL 1222
             +K   +N +  I+ L+R+YS STDLVS+DWKKMKIPPVL SSEH WLFKLMQPMKA+L 
Sbjct: 177  QKKRNVKNRVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQ 236

Query: 1221 VKDNLRNDLGREPTDGELAQATGMNVVQLRKQIAVGQAARSKLIKHNLRFILFVMNKYFQ 1042
             K++L+ ++ +E T GELA AT M+++Q+RK I VG+AAR+KLIKHNLR +LFV+NKYFQ
Sbjct: 237  AKEDLK-EVDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQ 295

Query: 1041 EFANGPKFQDLCQAGVKGLITAIDRFEPKRRLRLSTYGLFWIRHAIIRSMTLASFTKVSF 862
            +FA+GP+FQDLCQAGVKGLITAIDRFEPKRRL+LSTY LFWIRH+I+RS+TL+SFT+V F
Sbjct: 296  DFASGPRFQDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPF 355

Query: 861  GLESVRADIKKAKLQLMFELDREPTEEEITEKVGISMERYNEVMRASKPVASLHARHSVT 682
            GLE VR DI++ KL+L FEL R PTEEE+ E++GIS+ERY+EVM+ASKP+ SLH+RH  T
Sbjct: 356  GLERVRVDIQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITT 415

Query: 681  QEEFISGITDFEGAGGDKRRQPAXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGE 502
            QEE+I+GITD +G  GD RRQ A            LKPKESLVIRQRYGLDGKGDRTLGE
Sbjct: 416  QEEYINGITDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGE 475

Query: 501  IGGNLNISREMVRKHEVKAFMKLKHPARMD 412
            I GNLNISRE+VRKHEVKA MKLKHPAR+D
Sbjct: 476  IAGNLNISREIVRKHEVKALMKLKHPARLD 505