BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00001040
         (1259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK94471.1| unknown [Populus trichocarpa]                          447   e-123
ref|XP_002299862.1| predicted protein [Populus trichocarpa] gi|2...   445   e-122
ref|XP_002533746.1| ubiquitin fusion degradaton protein, putativ...   427   e-117
ref|XP_003547271.1| PREDICTED: ubiquitin fusion degradation prot...   411   e-112
ref|NP_973557.1| ubiquitin fusion degradation UFD1-like protein ...   399   e-109

>gb|ABK94471.1| unknown [Populus trichocarpa]
          Length = 314

 Score =  447 bits (1151), Expect = e-123
 Identities = 223/312 (71%), Positives = 257/312 (82%)
 Frame = +1

Query: 61  TSAFEQNYRCYPVAFIEKAHLEKGDKVIMPPSALDRLAYLQIDYPMLFEVSNPTSGKITH 240
           +S+FEQ+YRCYPV+FI+KAHLEKGDK+IMPPSALDRLA L IDYPMLFE+ NP++G+ +H
Sbjct: 8   SSSFEQSYRCYPVSFIDKAHLEKGDKIIMPPSALDRLATLHIDYPMLFELHNPSAGRTSH 67

Query: 241 CGVLEFIADEGMIYLPYWMMENMLLREGDIVNIKNASLSKGTFVKLQPHTKDFLDVSNPK 420
           CGVLEFIADEGMIYLPYWMMENMLL+EGDIV ++N SL KGTFVKLQPHTKDFLD+SNPK
Sbjct: 68  CGVLEFIADEGMIYLPYWMMENMLLQEGDIVQLRNTSLEKGTFVKLQPHTKDFLDISNPK 127

Query: 421 AILETTLRSYSCLTTGDTIMVAYNNKKFYIDIVETKPSSAISIIETDCEVDFAPPLDYQE 600
           AILET+LR+YSCLTTGDTIMVAYNNKK+YIDIVE KPSSAISIIETDCEVDFAPPLDY+E
Sbjct: 128 AILETSLRNYSCLTTGDTIMVAYNNKKYYIDIVEAKPSSAISIIETDCEVDFAPPLDYKE 187

Query: 601 PEKPSKASISKKRPPEDQAEEETANKVPKFSAFTGSSKRLDGKPSTESIVEASSSLLKHH 780
           PEKP     S K PPE    EE A K+P+FSAFTGS++RLDGKP+T+         LK H
Sbjct: 188 PEKPKSIPRSNKIPPEGM--EEPAAKMPRFSAFTGSARRLDGKPATQPTASTICPALKQH 245

Query: 781 KPEASKTNVSTPSSSTSRKHCGKLVFGSNGDQPSHATPKTETKQKEHSQEEQPKKGEETK 960
           +PEA + N S   SS S +  GKLVFGS  +QP + TPK   K+   S +E P+K E+ K
Sbjct: 246 QPEA-ENNGSKLLSSLSHQQSGKLVFGSTSNQPQNETPKVPLKK---STQEPPQKVEDPK 301

Query: 961 FQAFTGKKYSLK 996
           FQAFTGKKYSLK
Sbjct: 302 FQAFTGKKYSLK 313


>ref|XP_002299862.1| predicted protein [Populus trichocarpa] gi|222847120|gb|EEE84667.1|
           predicted protein [Populus trichocarpa]
          Length = 306

 Score =  445 bits (1144), Expect = e-122
 Identities = 222/312 (71%), Positives = 256/312 (82%)
 Frame = +1

Query: 61  TSAFEQNYRCYPVAFIEKAHLEKGDKVIMPPSALDRLAYLQIDYPMLFEVSNPTSGKITH 240
           +S+FEQ+YRCYPV+FI+KAHLEKGDK+IMPPSALDRLA L IDYPMLFE+ NP++G+ +H
Sbjct: 3   SSSFEQSYRCYPVSFIDKAHLEKGDKIIMPPSALDRLATLHIDYPMLFELHNPSAGRTSH 62

Query: 241 CGVLEFIADEGMIYLPYWMMENMLLREGDIVNIKNASLSKGTFVKLQPHTKDFLDVSNPK 420
           CGVLEFIADEGMIYLPYWMMENMLL+EGDIV ++N SL KGTFVKLQPHTKDFLD+SNPK
Sbjct: 63  CGVLEFIADEGMIYLPYWMMENMLLQEGDIVQLRNTSLEKGTFVKLQPHTKDFLDISNPK 122

Query: 421 AILETTLRSYSCLTTGDTIMVAYNNKKFYIDIVETKPSSAISIIETDCEVDFAPPLDYQE 600
           AILET+LR+YSCLTTGDTIMVAYNNKK+YIDIVE KPSSAISIIETDCEVDFAPPLDY+E
Sbjct: 123 AILETSLRNYSCLTTGDTIMVAYNNKKYYIDIVEAKPSSAISIIETDCEVDFAPPLDYKE 182

Query: 601 PEKPSKASISKKRPPEDQAEEETANKVPKFSAFTGSSKRLDGKPSTESIVEASSSLLKHH 780
           PEKP     S K PP     EE A K+P+FSAFTGS++RLDGKP+T+         LK H
Sbjct: 183 PEKPKSIPRSNKIPP-----EEPAAKMPRFSAFTGSARRLDGKPATQPTASTICPALKQH 237

Query: 781 KPEASKTNVSTPSSSTSRKHCGKLVFGSNGDQPSHATPKTETKQKEHSQEEQPKKGEETK 960
           +PEA + N S   SS S +  GKLVFGS  +QP + TPK   K+   S +E P+K E+ K
Sbjct: 238 QPEA-ENNGSKLLSSLSHQQSGKLVFGSTSNQPQNETPKVPLKK---STQEPPQKVEDPK 293

Query: 961 FQAFTGKKYSLK 996
           FQAFTGKKYSLK
Sbjct: 294 FQAFTGKKYSLK 305


>ref|XP_002533746.1| ubiquitin fusion degradaton protein, putative [Ricinus communis]
           gi|223526334|gb|EEF28633.1| ubiquitin fusion degradaton
           protein, putative [Ricinus communis]
          Length = 315

 Score =  427 bits (1097), Expect = e-117
 Identities = 207/313 (66%), Positives = 255/313 (81%), Gaps = 1/313 (0%)
 Frame = +1

Query: 61  TSAFEQNYRCYPVAFIEKAHLEKGDKVIMPPSALDRLAYLQIDYPMLFEVSNPTSGKITH 240
           +S FE++YRCYP +FI+K HLEKGDK+IMPPSALD+LA L IDYPMLFE+ NP++ ++TH
Sbjct: 8   SSMFERSYRCYPGSFIDKPHLEKGDKIIMPPSALDQLASLHIDYPMLFELRNPSAERVTH 67

Query: 241 CGVLEFIADEGMIYLPYWMMENMLLREGDIVNIKNASLSKGTFVKLQPHTKDFLDVSNPK 420
           CGVLEF+ADEG+I+LPYWMMENMLL+EGD+V +KNASL KGT+VKLQPHT DFLD+SNPK
Sbjct: 68  CGVLEFVADEGLIFLPYWMMENMLLQEGDLVQLKNASLMKGTYVKLQPHTTDFLDISNPK 127

Query: 421 AILETTLRSYSCLTTGDTIMVAYNNKKFYIDIVETKPSSAISIIETDCEVDFAPPLDYQE 600
           AILET+LR+YSCLTTGDTIMVAYNNKK+YIDIVETKPS A+SIIETDCEVDFAPPLDY+E
Sbjct: 128 AILETSLRNYSCLTTGDTIMVAYNNKKYYIDIVETKPSPAVSIIETDCEVDFAPPLDYKE 187

Query: 601 PEKPSKASISKKRPPEDQAEEETANKVPKFSAFTGSSKRLDGKPSTESIVEASSSLLKHH 780
           PEKPS +  S +  P  + EEE A K+PKFS F+G+++RLDGK ST+ +   +  +LK H
Sbjct: 188 PEKPSPSPRSNQTRP--KVEEEPAKKIPKFSPFSGAARRLDGKLSTQPVAAVTEPVLKQH 245

Query: 781 KPEA-SKTNVSTPSSSTSRKHCGKLVFGSNGDQPSHATPKTETKQKEHSQEEQPKKGEET 957
           + EA +    S PS++ SR H GKL+FGSN +QP +   +   K+   S  E P+K E  
Sbjct: 246 QSEAGTDIRGSKPSNAASRSHSGKLIFGSNANQPQNEAREIAAKK---SSPEAPQKAEPP 302

Query: 958 KFQAFTGKKYSLK 996
           KFQAFTGK+YSLK
Sbjct: 303 KFQAFTGKRYSLK 315


>ref|XP_003547271.1| PREDICTED: ubiquitin fusion degradation protein 1 homolog [Glycine
           max]
          Length = 318

 Score =  411 bits (1057), Expect = e-112
 Identities = 204/314 (64%), Positives = 251/314 (79%), Gaps = 3/314 (0%)
 Frame = +1

Query: 64  SAFEQNYRCYPVAFIEKAHLEKGDKVIMPPSALDRLAYLQIDYPMLFEVSNPTSGKITHC 243
           + FEQ YRCYPV+FIEK  LEKGDK+IMPPSALDRLA L I+YPMLF++ NP++ ++THC
Sbjct: 10  ATFEQFYRCYPVSFIEKPDLEKGDKIIMPPSALDRLASLHIEYPMLFQIKNPSAERVTHC 69

Query: 244 GVLEFIADEGMIYLPYWMMENMLLREGDIVNIKNASLSKGTFVKLQPHTKDFLDVSNPKA 423
           GVLEF++DEG+IY+PYWMMENMLL+EGDIV +KN +L+KGT+VKLQPHTKDFLD+SNPKA
Sbjct: 70  GVLEFVSDEGIIYIPYWMMENMLLQEGDIVKVKNTNLAKGTYVKLQPHTKDFLDISNPKA 129

Query: 424 ILETTLRSYSCLTTGDTIMVAYNNKKFYIDIVETKPSSAISIIETDCEVDFAPPLDYQEP 603
           ILETTLRSYSCLTTGDTIMV YNNKK+YIDIVETKPS A+SIIETDCEVDFAPPLDY+EP
Sbjct: 130 ILETTLRSYSCLTTGDTIMVPYNNKKYYIDIVETKPSPAVSIIETDCEVDFAPPLDYKEP 189

Query: 604 EKPSKASI-SKKRPPEDQAEEETANKVPKFSAFTGSSKRLDGKPSTESIVEASSSLLKHH 780
           EK +K  +  +KRP   + E+E   K+ + + FTGS +RLDGKPS  S+ + SS  LK  
Sbjct: 190 EKQAKPVVFDRKRP---KVEDEPPTKIARLTPFTGSGRRLDGKPSAPSVEQTSSPELKQR 246

Query: 781 KPEAS-KTNVSTPSSSTSRKHCGKLVFGSNGDQPS-HATPKTETKQKEHSQEEQPKKGEE 954
           + +   K + S  S++ SR+H GKLVFGSN        TPK     +E++ +E+ +K EE
Sbjct: 247 QTDKEIKGSDSKSSNTVSRRHSGKLVFGSNATTSDIQTTPKV---SQENTSQEKSQKEEE 303

Query: 955 TKFQAFTGKKYSLK 996
            KF+AFTGKKYSLK
Sbjct: 304 PKFKAFTGKKYSLK 317


>ref|NP_973557.1| ubiquitin fusion degradation UFD1-like protein [Arabidopsis
           thaliana] gi|44917441|gb|AAS49045.1| At2g29070
           [Arabidopsis thaliana] gi|45773886|gb|AAS76747.1|
           At2g29070 [Arabidopsis thaliana]
           gi|111609944|gb|ABH11522.1| UFD1c [synthetic construct]
           gi|330253112|gb|AEC08206.1| ubiquitin fusion degradation
           UFD1-like protein [Arabidopsis thaliana]
          Length = 312

 Score =  399 bits (1026), Expect = e-109
 Identities = 197/310 (63%), Positives = 241/310 (77%)
 Frame = +1

Query: 64  SAFEQNYRCYPVAFIEKAHLEKGDKVIMPPSALDRLAYLQIDYPMLFEVSNPTSGKITHC 243
           S+FEQ YRCYPV FI+KAHLEKGDK+IMPPSALDRLA L I+YPMLF++SN +  K +HC
Sbjct: 6   SSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSHC 65

Query: 244 GVLEFIADEGMIYLPYWMMENMLLREGDIVNIKNASLSKGTFVKLQPHTKDFLDVSNPKA 423
           GVLEF ADEG++YLPYWMM+NM L EGD++ +KN SL KGT++KLQPHT+DFLD+SNPKA
Sbjct: 66  GVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKA 125

Query: 424 ILETTLRSYSCLTTGDTIMVAYNNKKFYIDIVETKPSSAISIIETDCEVDFAPPLDYQEP 603
           ILETTLRSYSCLTTGDTIMV YNNK++YI++VE KPSSA+SIIETDCEVDFAPPLDY+EP
Sbjct: 126 ILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKEP 185

Query: 604 EKPSKASISKKRPPEDQAEEETANKVPKFSAFTGSSKRLDGKPSTESIVEASSSLLKHHK 783
           EKP K + S KRP + + EEE A+KVPKF+ FTGS KRLDGK  T++  E +    +  K
Sbjct: 186 EKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKRLDGKAQTQTEPEDTK---QQEK 242

Query: 784 PEASKTNVSTPSSSTSRKHCGKLVFGSNGDQPSHATPKTETKQKEHSQEEQPKKGEETKF 963
           P  +  +    S +T R+  GKLVFGSN    +  T K +    ++  +E   K +E KF
Sbjct: 243 PTENGKDDEKLSVTTPRQISGKLVFGSNSKSAAKETAKVD--DPKNIVQESSTKSDEAKF 300

Query: 964 QAFTGKKYSL 993
           + FTGKKYSL
Sbjct: 301 KVFTGKKYSL 310