BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00000878
         (1207 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   538   e-151
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   537   e-150
ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   536   e-150
ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II su...   526   e-147
ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II su...   522   e-146

>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
            gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
            II subunit, putative [Ricinus communis]
          Length = 318

 Score =  538 bits (1387), Expect = e-151
 Identities = 266/301 (88%), Positives = 291/301 (96%)
 Frame = -1

Query: 1207 KDDYAKFELRDTDASIANALRRVMISEVPTVAIDLVEIEINSTVLNDEFLAHRLGLVPLT 1028
            KDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIE+NS+VLNDEF+AHRLGL+PLT
Sbjct: 18   KDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 77

Query: 1027 SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCIGDQTLDVTSKDLYSSDHTVVPVDF 848
            SERAMSMRFSRDCDACDGDGQC++CSVEFHLRAKCI DQTLDVTSKDLYSSDHTVVPVDF
Sbjct: 78   SERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDVTSKDLYSSDHTVVPVDF 137

Query: 847  SDASGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPAIHINQ 668
            SD+SGY++SEQRGIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP IHIN+
Sbjct: 138  SDSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINE 197

Query: 667  EMMESLTLKEKQSFVDSSPTKVFEIDDETQQVKIVDSEAYAYDDEVLKKAEAMGKPGLVE 488
            ++MESL+L+EKQS+V+SSPTKVF+ID  TQQV +VD EAY YD+EV+KKAE+MGKPGLV 
Sbjct: 198  DLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVN 257

Query: 487  IYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSEDTVEADDQFGELGAHMRG 308
            I AKEDSFIFTVESTGAIKASQLVLNAI+ILKQKLDAVRLSEDTVEADDQFGELGAHMRG
Sbjct: 258  IQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRG 317

Query: 307  G 305
            G
Sbjct: 318  G 318


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  537 bits (1383), Expect = e-150
 Identities = 264/301 (87%), Positives = 292/301 (97%)
 Frame = -1

Query: 1207 KDDYAKFELRDTDASIANALRRVMISEVPTVAIDLVEIEINSTVLNDEFLAHRLGLVPLT 1028
            KDDYAKFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIE+NS+VLNDEF+AHRLGL+PLT
Sbjct: 18   KDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 77

Query: 1027 SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCIGDQTLDVTSKDLYSSDHTVVPVDF 848
            SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKC+ D+TLDVTSKDL SSDHTVVPVDF
Sbjct: 78   SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDF 137

Query: 847  SDASGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPAIHINQ 668
            SD+SGY++++++GIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP IHIN+
Sbjct: 138  SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 197

Query: 667  EMMESLTLKEKQSFVDSSPTKVFEIDDETQQVKIVDSEAYAYDDEVLKKAEAMGKPGLVE 488
            ++MESLTL+EK S+V+SSPTKVF+ID  +QQV + D+EAY YDDEVLKKAEAMGKPGLVE
Sbjct: 198  DLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVE 257

Query: 487  IYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSEDTVEADDQFGELGAHMRG 308
            IYAKEDSFIFTVESTGAIKASQLVLNAID+LKQKLDAVRLSEDTVEADDQFGELGAHMRG
Sbjct: 258  IYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRG 317

Query: 307  G 305
            G
Sbjct: 318  G 318


>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
            vinifera]
          Length = 318

 Score =  536 bits (1380), Expect = e-150
 Identities = 263/301 (87%), Positives = 292/301 (97%)
 Frame = -1

Query: 1207 KDDYAKFELRDTDASIANALRRVMISEVPTVAIDLVEIEINSTVLNDEFLAHRLGLVPLT 1028
            KDDYAKFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIE+NS+VLNDEF+AHRLGL+PLT
Sbjct: 18   KDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 77

Query: 1027 SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCIGDQTLDVTSKDLYSSDHTVVPVDF 848
            SERAM+MRFSRDCDACDGDGQCEFCSVEFHLRAKC+ D+TLDVTSKDL SSDHTVVPVDF
Sbjct: 78   SERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDVTSKDLISSDHTVVPVDF 137

Query: 847  SDASGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPAIHINQ 668
            SD+SGY++++++GIIIVKLRRGQEL+LRAIARKGIGKDHAKWSPAATVTFMYEP IHIN+
Sbjct: 138  SDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 197

Query: 667  EMMESLTLKEKQSFVDSSPTKVFEIDDETQQVKIVDSEAYAYDDEVLKKAEAMGKPGLVE 488
            ++MESLTL+EK S+V+SSPTKVF+ID  +QQV + D+EAY YDDEVLKKAEAMGKPGLVE
Sbjct: 198  DLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVE 257

Query: 487  IYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSEDTVEADDQFGELGAHMRG 308
            IYAKEDSFIFTVESTGAIKASQLVLNAID+LKQKLDAVRLSEDTVEADDQFGELGAHMRG
Sbjct: 258  IYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRG 317

Query: 307  G 305
            G
Sbjct: 318  G 318


>ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 319

 Score =  526 bits (1355), Expect = e-147
 Identities = 262/301 (87%), Positives = 284/301 (94%)
 Frame = -1

Query: 1207 KDDYAKFELRDTDASIANALRRVMISEVPTVAIDLVEIEINSTVLNDEFLAHRLGLVPLT 1028
            KDDYAKFELRDTDASIANALRRVMI+EVPTVAIDLVEIE+NS+VLNDEF+AHRLGL+PLT
Sbjct: 19   KDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 78

Query: 1027 SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCIGDQTLDVTSKDLYSSDHTVVPVDF 848
            SERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC+ DQTLDVTSKDLYSSD TV PVDF
Sbjct: 79   SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSDPTVSPVDF 138

Query: 847  SDASGYENSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPAIHINQ 668
            SD S  ++   RGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEP IHIN+
Sbjct: 139  SDPSATDSDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINE 198

Query: 667  EMMESLTLKEKQSFVDSSPTKVFEIDDETQQVKIVDSEAYAYDDEVLKKAEAMGKPGLVE 488
            ++ME+LTL+EK+ +VDSSPT+VFEID  TQQV +VD+EAY YDDEVLKKAEAMGKPGLVE
Sbjct: 199  DLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVE 258

Query: 487  IYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSEDTVEADDQFGELGAHMRG 308
            I A++DSFIFTVESTGA+KASQLVLNAI+ILKQKLDAVRLSEDTVEADDQFGELGAHMRG
Sbjct: 259  IIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRG 318

Query: 307  G 305
            G
Sbjct: 319  G 319


>ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
            [Glycine max]
          Length = 320

 Score =  522 bits (1344), Expect = e-146
 Identities = 262/302 (86%), Positives = 285/302 (94%), Gaps = 1/302 (0%)
 Frame = -1

Query: 1207 KDDYAKFELRDTDASIANALRRVMISEVPTVAIDLVEIEINSTVLNDEFLAHRLGLVPLT 1028
            KDDYAKFELRDTDASIANALRRVMI+EVPTVAIDLVEIE+NS+VLNDEF+AHRLGL+PLT
Sbjct: 19   KDDYAKFELRDTDASIANALRRVMIAEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 78

Query: 1027 SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCIGDQTLDVTSKDLYSSDHTVVPVDF 848
            SERAMSMRFSRDCDACDGDGQCEFCSVEFHLR KC+ DQTLDVTSKDLYSSD TV PVDF
Sbjct: 79   SERAMSMRFSRDCDACDGDGQCEFCSVEFHLRVKCMTDQTLDVTSKDLYSSDPTVSPVDF 138

Query: 847  SDASGYENSEQ-RGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPAIHIN 671
            SD S  ++ +  RGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEP IHIN
Sbjct: 139  SDPSATDSPDNNRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHIN 198

Query: 670  QEMMESLTLKEKQSFVDSSPTKVFEIDDETQQVKIVDSEAYAYDDEVLKKAEAMGKPGLV 491
            +++ME+LTL+EK+ +VDSSPT+VFEID  TQQV +VD+EAY YDDEVLKKAEAMGKPGLV
Sbjct: 199  EDLMETLTLEEKREWVDSSPTRVFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLV 258

Query: 490  EIYAKEDSFIFTVESTGAIKASQLVLNAIDILKQKLDAVRLSEDTVEADDQFGELGAHMR 311
            EI A++DSFIFTVESTGA+KASQLVLNAI+ILKQKLDAVRLSEDTVEADDQFGELGAHMR
Sbjct: 259  EIIARQDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMR 318

Query: 310  GG 305
            GG
Sbjct: 319  GG 320