BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00000716
         (2321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31099.3| unnamed protein product [Vitis vinifera]               70   3e-09
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi...    53   6e-07
gb|AAD37020.1| putative retroelement pol polyprotein [Arabidopsi...    53   6e-07
gb|AAL31683.1|AC092390_4 putative polyprotein [Oryza sativa Japo...    54   7e-07
gb|ABC94893.1| polyprotein [Oryza australiensis]                       53   2e-06

>emb|CBI31099.3| unnamed protein product [Vitis vinifera]
          Length = 385

 Score = 69.7 bits (169), Expect = 3e-09
 Identities = 31/37 (83%), Positives = 34/37 (91%)
 Frame = -2

Query: 613 CTESKGLGIQWCNVKRSCDMKTLIAIWGEFPSGNNGS 503
           C E++ LGIQWCNVKRSCDMKTLIAIWG+FPSGNN S
Sbjct: 151 CFENR-LGIQWCNVKRSCDMKTLIAIWGKFPSGNNAS 186


>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1611

 Score = 52.8 bits (125), Expect(2) = 6e-07
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = -2

Query: 226 GHIIGSSGVKIDPEKTKSVREWSTPKSLAEVRSFLGM 116
           GH+I   GV +DPEK +S++EW  P++  E+RSFLG+
Sbjct: 859 GHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGL 895



 Score = 29.3 bits (64), Expect(2) = 6e-07
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 339 HLKHVEAVLEALREHQLKAHTEK 271
           H +H+ AVLE LREH+L A   K
Sbjct: 825 HQEHLRAVLERLREHELFAKLSK 847


>gb|AAD37020.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 949

 Score = 52.8 bits (125), Expect(2) = 6e-07
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = -2

Query: 226 GHIIGSSGVKIDPEKTKSVREWSTPKSLAEVRSFLGM 116
           GH+I   GV +DPEK +S++EW  P++  E+RSFLG+
Sbjct: 354 GHVISDQGVSVDPEKIRSIKEWPRPRNATEIRSFLGL 390



 Score = 29.3 bits (64), Expect(2) = 6e-07
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 339 HLKHVEAVLEALREHQLKAHTEK 271
           H +H+ AVLE LREH+L A   K
Sbjct: 320 HQEHLRAVLERLREHELFAKLSK 342


>gb|AAL31683.1|AC092390_4 putative polyprotein [Oryza sativa Japonica Group]
           gi|108709934|gb|ABF97729.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 962

 Score = 53.9 bits (128), Expect(2) = 7e-07
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = -2

Query: 226 GHIIGSSGVKIDPEKTKSVREWSTPKSLAEVRSFLGM 116
           GHII   GV +DP+K K+V EW TP S++E+RSFLG+
Sbjct: 524 GHIITKEGVAVDPQKIKAVMEWKTPTSVSEIRSFLGL 560



 Score = 27.7 bits (60), Expect(2) = 7e-07
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 339 HLKHVEAVLEALREHQLKAHTEK 271
           H +H+  VLE LR+HQL A   K
Sbjct: 490 HKQHLRLVLEKLRQHQLYAKLSK 512


>gb|ABC94893.1| polyprotein [Oryza australiensis]
          Length = 1469

 Score = 53.1 bits (126), Expect(2) = 2e-06
 Identities = 20/44 (45%), Positives = 32/44 (72%)
 Frame = -2

Query: 247 MRKLVCSGHIIGSSGVKIDPEKTKSVREWSTPKSLAEVRSFLGM 116
           ++++   GH++ + GV +DP K ++V EW  PKS+ EVRSFLG+
Sbjct: 734 LKEVAFLGHVVSAGGVAVDPAKVEAVMEWKAPKSVTEVRSFLGL 777



 Score = 27.3 bits (59), Expect(2) = 2e-06
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 339 HLKHVEAVLEALREHQLKAHTEK 271
           H +H+  VLE LREH+L A   K
Sbjct: 707 HAEHLRLVLEKLREHRLYAKFSK 729