BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00000688
         (631 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   315   6e-84
gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...   313   2e-83
ref|XP_002521232.1| Ribulose bisphosphate carboxylase small chai...   308   4e-82
gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subun...   306   2e-81
sp|Q96542.1|RBS_BETVE RecName: Full=Ribulose bisphosphate carbox...   304   8e-81

>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  315 bits (806), Expect = 6e-84
 Identities = 152/179 (84%), Positives = 166/179 (92%), Gaps = 2/179 (1%)
 Frame = -3

Query: 560 MASSMISS--VAPVTRASPAQANMVAPFTGLKSIASFPVTRKLDNDITSVASNGGRVQCM 387
           MASS+ISS  VA V+RA PAQA+MVAPFTGLKS A+FPVTRK+ NDITS+ SNGGRVQCM
Sbjct: 1   MASSVISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKV-NDITSLPSNGGRVQCM 59

Query: 386 KVWPPLGLKKFETLSYLPPLTTEQLAKEIDYLLRSGWVPCLEFELEHGFVYREHNRSPGY 207
           KVWPPLGLKKFETLSYLP LT EQL+KE+DYLLRSGWVPCLEFELEHGFVYREH+ SPGY
Sbjct: 60  KVWPPLGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGY 119

Query: 206 YDGRYWVMWKLPMFGCTDSSQVLKELDECVKEYPSAYVRIIGFDNVRQVQCISFIAHQP 30
           YDGRYW MWKLPMFGCTDSSQVLKE++EC KEYP+AY+RIIGFDNVRQVQCISFIA +P
Sbjct: 120 YDGRYWTMWKLPMFGCTDSSQVLKEVEECKKEYPNAYIRIIGFDNVRQVQCISFIAFKP 178


>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Aralia elata]
          Length = 183

 Score =  313 bits (802), Expect = 2e-83
 Identities = 150/179 (83%), Positives = 168/179 (93%), Gaps = 2/179 (1%)
 Frame = -3

Query: 560 MASSMISS--VAPVTRASPAQANMVAPFTGLKSIASFPVTRKLDNDITSVASNGGRVQCM 387
           MASS+ISS  VA V+RA+PAQA+MVAPFTGLKS A+FPVTRK+ NDITS+ SNGGRVQCM
Sbjct: 1   MASSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKV-NDITSLPSNGGRVQCM 59

Query: 386 KVWPPLGLKKFETLSYLPPLTTEQLAKEIDYLLRSGWVPCLEFELEHGFVYREHNRSPGY 207
           KVWPPLGLKKFETLSYLPPLT E+LAKE+DYLLRSGWVPCLEFELEHG+VYRE++RSPGY
Sbjct: 60  KVWPPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGY 119

Query: 206 YDGRYWVMWKLPMFGCTDSSQVLKELDECVKEYPSAYVRIIGFDNVRQVQCISFIAHQP 30
           YDGRYW MWKLPMFGCTDSSQVL E++EC KEYP+A++RIIGFDNVRQVQCISFIA +P
Sbjct: 120 YDGRYWTMWKLPMFGCTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKP 178


>ref|XP_002521232.1| Ribulose bisphosphate carboxylase small chain 1B, chloroplast
           precursor, putative [Ricinus communis]
           gi|223539597|gb|EEF41184.1| Ribulose bisphosphate
           carboxylase small chain 1B, chloroplast precursor,
           putative [Ricinus communis]
          Length = 181

 Score =  308 bits (790), Expect = 4e-82
 Identities = 146/177 (82%), Positives = 163/177 (92%)
 Frame = -3

Query: 560 MASSMISSVAPVTRASPAQANMVAPFTGLKSIASFPVTRKLDNDITSVASNGGRVQCMKV 381
           MASSMISS A V+R+SPAQA MVAPFTGLKS ASFPVTRK +NDITS+ASNGGRVQCM+V
Sbjct: 1   MASSMISS-ASVSRSSPAQATMVAPFTGLKSAASFPVTRKANNDITSIASNGGRVQCMQV 59

Query: 380 WPPLGLKKFETLSYLPPLTTEQLAKEIDYLLRSGWVPCLEFELEHGFVYREHNRSPGYYD 201
           WPPLG KKFETLSYLP LT EQLAKE+DYLLR GW+PCLEFELEHGFVYRE++RSPGYYD
Sbjct: 60  WPPLGKKKFETLSYLPDLTDEQLAKEVDYLLRKGWIPCLEFELEHGFVYRENHRSPGYYD 119

Query: 200 GRYWVMWKLPMFGCTDSSQVLKELDECVKEYPSAYVRIIGFDNVRQVQCISFIAHQP 30
           GRYW MWKLPMFGC+DS+QVLKELDE  K YP++++RIIGFDN RQVQCISFIA++P
Sbjct: 120 GRYWTMWKLPMFGCSDSTQVLKELDEAKKAYPNSFIRIIGFDNRRQVQCISFIAYKP 176


>gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subunit [Malus x
           domestica x Pyrus communis]
          Length = 179

 Score =  306 bits (784), Expect = 2e-81
 Identities = 145/177 (81%), Positives = 160/177 (90%)
 Frame = -3

Query: 560 MASSMISSVAPVTRASPAQANMVAPFTGLKSIASFPVTRKLDNDITSVASNGGRVQCMKV 381
           MASSMISS    T ++PAQA MVAPFTGLKS ++FPVTRK  NDITS+ASNGGRVQCM+V
Sbjct: 1   MASSMISSGTVATVSAPAQARMVAPFTGLKSSSAFPVTRK-SNDITSIASNGGRVQCMQV 59

Query: 380 WPPLGLKKFETLSYLPPLTTEQLAKEIDYLLRSGWVPCLEFELEHGFVYREHNRSPGYYD 201
           WPPLGLKKFETLSYLPPL+TE LAKE+DYLLR  WVPCLEFELEHGFVYRE+NRSPGYYD
Sbjct: 60  WPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYD 119

Query: 200 GRYWVMWKLPMFGCTDSSQVLKELDECVKEYPSAYVRIIGFDNVRQVQCISFIAHQP 30
           GRYW MWKLPMFGCTDSSQVLKEL+E  K YP +++RIIGFDNVRQVQCISFIA++P
Sbjct: 120 GRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 176


>sp|Q96542.1|RBS_BETVE RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|1536889|emb|CAA69102.1|
           ribulose-bisphosphate carboxylase [Betula pendula]
          Length = 182

 Score =  304 bits (779), Expect = 8e-81
 Identities = 145/179 (81%), Positives = 163/179 (91%), Gaps = 2/179 (1%)
 Frame = -3

Query: 560 MASSMISS--VAPVTRASPAQANMVAPFTGLKSIASFPVTRKLDNDITSVASNGGRVQCM 387
           MA SMISS  VA V+RASPAQ++MVAPFT LKS ++FPVT+K +NDITS+ASNGGRVQCM
Sbjct: 1   MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query: 386 KVWPPLGLKKFETLSYLPPLTTEQLAKEIDYLLRSGWVPCLEFELEHGFVYREHNRSPGY 207
           +VWPPLGLKKFETLSYLPPL++EQLAKE+DYLLR   +PCLEFELEHGFVYREHNRSPGY
Sbjct: 61  QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query: 206 YDGRYWVMWKLPMFGCTDSSQVLKELDECVKEYPSAYVRIIGFDNVRQVQCISFIAHQP 30
           YDGRYW MWKLPMFGC DSSQVLKEL+EC K YPSA++RIIGFDN RQVQ ISFIA++P
Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179