BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00000537
         (820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...   239   7e-61
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   234   2e-59
gb|AAO25119.1| ribulose-1,5-bisphosphate carboxylase small subun...   222   9e-56
sp|P08705.1|RBS_HELAN RecName: Full=Ribulose bisphosphate carbox...   219   4e-55
emb|CAD11990.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   218   2e-54

>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Aralia elata]
          Length = 183

 Score =  239 bits (609), Expect = 7e-61
 Identities = 126/187 (67%), Positives = 138/187 (73%), Gaps = 2/187 (1%)
 Frame = +3

Query: 60  MASSMISS--VAPVTRASPAQASMVAPFTGLKSIASFPVTRKAEDITSITSNGGRVQCMK 233
           MASS+ISS  VA V+RA+PAQASMVAPFTGLKS A+FPVTRK  DITS+ SNGGRVQCMK
Sbjct: 1   MASSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 234 VWPPLGLKKFETLSYLPPLTTEQLAKEVDYLLRSGWVPCLEFELEHGFVYRENNRSPGYX 413
           VWPPLGLKKFETLSYLPPLT E+LAKEVDYLLRSGWVPCLEFELEHG+VYREN+RSPGY 
Sbjct: 61  VWPPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGY- 119

Query: 414 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYPSAYVRIIGFDNVRQVQCI 593
                                                  EYP+A++RIIGFDNVRQVQCI
Sbjct: 120 --------YDGRYWTMWKLPMFGCTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCI 171

Query: 594 SFIAHQP 614
           SFIA +P
Sbjct: 172 SFIAFKP 178


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  234 bits (596), Expect = 2e-59
 Identities = 125/187 (66%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
 Frame = +3

Query: 60  MASSMISS--VAPVTRASPAQASMVAPFTGLKSIASFPVTRKAEDITSITSNGGRVQCMK 233
           MASS+ISS  VA V+RA PAQASMVAPFTGLKS A+FPVTRK  DITS+ SNGGRVQCMK
Sbjct: 1   MASSVISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMK 60

Query: 234 VWPPLGLKKFETLSYLPPLTTEQLAKEVDYLLRSGWVPCLEFELEHGFVYRENNRSPGYX 413
           VWPPLGLKKFETLSYLP LT EQL+KEVDYLLRSGWVPCLEFELEHGFVYRE++ SPGY 
Sbjct: 61  VWPPLGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHHHSPGY- 119

Query: 414 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYPSAYVRIIGFDNVRQVQCI 593
                                                  EYP+AY+RIIGFDNVRQVQCI
Sbjct: 120 --------YDGRYWTMWKLPMFGCTDSSQVLKEVEECKKEYPNAYIRIIGFDNVRQVQCI 171

Query: 594 SFIAHQP 614
           SFIA +P
Sbjct: 172 SFIAFKP 178


>gb|AAO25119.1| ribulose-1,5-bisphosphate carboxylase small subunit [Chrysanthemum
           x morifolium]
          Length = 179

 Score =  222 bits (565), Expect = 9e-56
 Identities = 115/186 (61%), Positives = 129/186 (69%)
 Frame = +3

Query: 60  MASSMISSVAPVTRASPAQASMVAPFTGLKSIASFPVTRKAEDITSITSNGGRVQCMKVW 239
           MAS   S+VA V R + AQASMVAPFTGLKS  +FPVT+K+ D +S+ SNGGRVQCMKVW
Sbjct: 1   MASISSSAVATVNRTTSAQASMVAPFTGLKSNVAFPVTKKSNDFSSLPSNGGRVQCMKVW 60

Query: 240 PPLGLKKFETLSYLPPLTTEQLAKEVDYLLRSGWVPCLEFELEHGFVYRENNRSPGYXXX 419
           PPLGLKK+ETLSYLPPLT  QLAKEV+YLLR+ WVPCLEFELEHGF YRENNRSPGY   
Sbjct: 61  PPLGLKKYETLSYLPPLTETQLAKEVEYLLRNKWVPCLEFELEHGFPYRENNRSPGY--- 117

Query: 420 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYPSAYVRIIGFDNVRQVQCISF 599
                                                EYP ++VRIIGFDNVRQVQCISF
Sbjct: 118 ------YDGRYWTMWKLPMFGCNDASQVLKELNECKKEYPQSWVRIIGFDNVRQVQCISF 171

Query: 600 IAHQPE 617
           IAH+P+
Sbjct: 172 IAHKPD 177


>sp|P08705.1|RBS_HELAN RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|18808|emb|CAA68490.1| ribulose bisphosphate
           carboxylase [Helianthus annuus]
           gi|755735|emb|CAA28737.1| RuBisCO (SSU) [Helianthus
           annuus]
          Length = 178

 Score =  219 bits (559), Expect = 4e-55
 Identities = 113/184 (61%), Positives = 128/184 (69%)
 Frame = +3

Query: 66  SSMISSVAPVTRASPAQASMVAPFTGLKSIASFPVTRKAEDITSITSNGGRVQCMKVWPP 245
           +S+ SSVA V+R +PAQA+MVAPFTGLKS A+FP T+KA D +++ SNGGRVQCMKVWPP
Sbjct: 2   ASISSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPP 61

Query: 246 LGLKKFETLSYLPPLTTEQLAKEVDYLLRSGWVPCLEFELEHGFVYRENNRSPGYXXXXX 425
           LGLKK+ETLSYLPPLT  QLAKEVDYLLR  WVPCLEFELEHGFVYREN RSPGY     
Sbjct: 62  LGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGY----- 116

Query: 426 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYPSAYVRIIGFDNVRQVQCISFIA 605
                                              EYP A++RIIGFDNVRQVQCI FIA
Sbjct: 117 ----YDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIA 172

Query: 606 HQPE 617
            +P+
Sbjct: 173 SRPD 176


>emb|CAD11990.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Coffea arabica] gi|24940140|emb|CAD11991.1|
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Coffea arabica]
          Length = 181

 Score =  218 bits (554), Expect = 2e-54
 Identities = 115/188 (61%), Positives = 132/188 (70%), Gaps = 2/188 (1%)
 Frame = +3

Query: 60  MASSMISS--VAPVTRASPAQASMVAPFTGLKSIASFPVTRKAEDITSITSNGGRVQCMK 233
           MASSMISS  VA  TRASPAQASMVAPF GLK+ +SFP+++K+ DITS+ +NGGRVQCM+
Sbjct: 1   MASSMISSAAVATTTRASPAQASMVAPFNGLKAASSFPISKKSVDITSLATNGGRVQCMQ 60

Query: 234 VWPPLGLKKFETLSYLPPLTTEQLAKEVDYLLRSGWVPCLEFELEHGFVYRENNRSPGYX 413
           VWPP GLKK+ETLSYLP LT EQL KE+DYL+RSGWVPCLEFELE GFVYRE +RSPGY 
Sbjct: 61  VWPPRGLKKYETLSYLPDLTDEQLLKEIDYLIRSGWVPCLEFELEKGFVYREYHRSPGY- 119

Query: 414 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYPSAYVRIIGFDNVRQVQCI 593
                                                  EYP+ +VRIIGFDNVRQVQCI
Sbjct: 120 --------YDGRYWTMWKLPMYGCTDATQVLNEVGECLKEYPNCWVRIIGFDNVRQVQCI 171

Query: 594 SFIAHQPE 617
           SFIA +P+
Sbjct: 172 SFIAAKPK 179