BLASTX nr result
ID: Cnidium21_contig00000417
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00000417
(1591 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277445.2| PREDICTED: splicing factor U2af small subuni... 286 1e-74
ref|XP_002528581.1| U2 snrnp auxiliary factor, small subunit, pu... 280 1e-72
gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus] 270 6e-70
ref|XP_003540217.1| PREDICTED: splicing factor U2af small subuni... 258 4e-66
ref|XP_004143302.1| PREDICTED: splicing factor U2af small subuni... 250 8e-64
>ref|XP_002277445.2| PREDICTED: splicing factor U2af small subunit B-like [Vitis vinifera]
Length = 343
Score = 286 bits (732), Expect = 1e-74
Identities = 153/278 (55%), Positives = 178/278 (64%), Gaps = 18/278 (6%)
Frame = +3
Query: 291 PLDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQ 470
PLDPRKIQ+H SKYGE+ESLNICDNLADHMVGNVY QFREEEHAA A++
Sbjct: 68 PLDPRKIQEHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127
Query: 471 SLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGK 650
+L GRFYAGRPIIVDFSPVTDFREATCRQYEEN+CNRGGYCNFMHLKKISRELRRQLFG+
Sbjct: 128 NLNGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNFMHLKKISRELRRQLFGR 187
Query: 651 NXXXXXXXXXXXPQHNRGYDERPH--------------XXXXXXXXXXDYADHRQND-XX 785
N P +RG++E PH D DHR +D
Sbjct: 188 NRRRRSRSRSRSPYRHRGHEEHPHGPHGPHGPHGPHGPRGPRGSNRRDDDRDHRYHDRGG 247
Query: 786 XXXXXXXXXXXXXXXXXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNKSANNYSN 965
+RNKSPVREGSAERRAKIEQWNRER+QA+ NK+ N++S+
Sbjct: 248 RRPRSRSPARRGGRSRSPGGRRNKSPVREGSAERRAKIEQWNREREQAEATNKNDNSHSD 307
Query: 966 DDRNSDGGNGKQNDQEQYYDP-HQK--RQNGPDDGGYS 1070
N + N + D +QYY+P HQ+ +Q GGY+
Sbjct: 308 ---NGNNNNDFEQDDQQYYNPQHQEEDQQQQQQHGGYN 342
Score = 82.0 bits (201), Expect = 4e-13
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36
>ref|XP_002528581.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
gi|223531977|gb|EEF33789.1| U2 snrnp auxiliary factor,
small subunit, putative [Ricinus communis]
Length = 313
Score = 280 bits (715), Expect = 1e-72
Identities = 143/245 (58%), Positives = 164/245 (66%), Gaps = 2/245 (0%)
Frame = +3
Query: 294 LDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQS 473
LDPRKIQDH SKYG++ESLNICDNLADHMVGNVY QFREE+HAA A+++
Sbjct: 71 LDPRKIQDHFEDFYQDLFEELSKYGDIESLNICDNLADHMVGNVYVQFREEDHAANALRN 130
Query: 474 LTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGKN 653
L GRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRR+LFG+N
Sbjct: 131 LNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRN 190
Query: 654 XXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXDYADHRQNDXXXXXXXXXXXXXXXXXX 833
P +RGYDERPH D A H ++
Sbjct: 191 RRRRSRSRSHSPSRHRGYDERPHGGRGFGRRDDDRAHH--HERGRRPRSRSPGRRGGRSR 248
Query: 834 XXXXKRNKS-PVREGSAERRAKIEQWNRERDQADTGNKSANNYSND-DRNSDGGNGKQND 1007
+RN+S PVRE SAERRAKIEQWNRER+Q ++GN+ N ND + N D NG D
Sbjct: 249 SPAGRRNRSPPVRESSAERRAKIEQWNREREQTESGNRDGQNLDNDRNSNGDAKNGGHYD 308
Query: 1008 QEQYY 1022
+Q++
Sbjct: 309 DDQHH 313
Score = 82.0 bits (201), Expect = 4e-13
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36
>gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]
Length = 310
Score = 270 bits (691), Expect = 6e-70
Identities = 142/249 (57%), Positives = 163/249 (65%)
Frame = +3
Query: 291 PLDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQ 470
PLDPRKIQ H SKYGE+ESLNICDNLADHMVGNVY QFREEEHA A++
Sbjct: 68 PLDPRKIQQHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAGEALR 127
Query: 471 SLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGK 650
+L+GRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFG+
Sbjct: 128 NLSGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGR 187
Query: 651 NXXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXDYADHRQNDXXXXXXXXXXXXXXXXX 830
PQ +RG+ +RPH D + R +D
Sbjct: 188 YRRRHSRSRSRSPQAHRGHGDRPHGGRGYGRRDDD-RNQRYHD-KGRRPRSRSPGHRGRS 245
Query: 831 XXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNKSANNYSNDDRNSDGGNGKQNDQ 1010
+R++SPVRE S ERRAKI QWNRE++QADTGN N+ D + NG Q++
Sbjct: 246 RSPPGRRDRSPVRENSEERRAKIAQWNREKEQADTGNNDVNH----DVTDNHANGFQDNG 301
Query: 1011 EQYYDPHQK 1037
E YYD Q+
Sbjct: 302 EDYYDHPQQ 310
Score = 82.0 bits (201), Expect = 4e-13
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36
>ref|XP_003540217.1| PREDICTED: splicing factor U2af small subunit A-like [Glycine max]
Length = 315
Score = 258 bits (658), Expect = 4e-66
Identities = 131/243 (53%), Positives = 156/243 (64%), Gaps = 1/243 (0%)
Frame = +3
Query: 291 PLDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQ 470
P+DPRKIQDH SKYG++ESLN+CDNLADHMVGNVY QFREEEHAA AV+
Sbjct: 68 PIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEEHAANAVR 127
Query: 471 SLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGK 650
+LTGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+ISRELRRQLFGK
Sbjct: 128 NLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRELRRQLFGK 187
Query: 651 NXXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXDYADHRQNDXXXXXXXXXXXXXXXXX 830
+ P +R ++ER H D+ H
Sbjct: 188 SHGRHSRSRSRSPYRHRSHEERSHRSHSRKYDDRDH-HHESRSRRHRSTSPRHRRGRSRS 246
Query: 831 XXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNK-SANNYSNDDRNSDGGNGKQND 1007
+R+ SPVR+GS ERRA+IEQWNRER+ + G K +A +N + + G+ +Q
Sbjct: 247 RSPGGRRHHSPVRDGSEERRARIEQWNREREDQEPGYKVNAEEINNGNASKHHGHQQQEQ 306
Query: 1008 QEQ 1016
+ Q
Sbjct: 307 EPQ 309
Score = 82.0 bits (201), Expect = 4e-13
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36
>ref|XP_004143302.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
sativus]
Length = 317
Score = 250 bits (638), Expect = 8e-64
Identities = 134/254 (52%), Positives = 156/254 (61%), Gaps = 6/254 (2%)
Frame = +3
Query: 294 LDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQS 473
LDPRK+QDH SKYG+LESLNICDNLADHMVGNVY QFREEE AA A+ +
Sbjct: 69 LDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEEQAANALHN 128
Query: 474 LTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGKN 653
L GRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRR+LFG++
Sbjct: 129 LNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRS 188
Query: 654 --XXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXD----YADHRQNDXXXXXXXXXXXX 815
P + GY+ER H D R +D
Sbjct: 189 RRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEKDPRYHDRSRRPRSRSPRH 248
Query: 816 XXXXXXXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNKSANNYSNDDRNSDGGNG 995
+RN+SPVRE SAERRAKIEQWNR+R++ D G+ ++ D GG+
Sbjct: 249 RGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKEDNGS------NHQDVKDVGGSN 302
Query: 996 KQNDQEQYYDPHQK 1037
E +DP ++
Sbjct: 303 DLVQNEDEFDPSKQ 316
Score = 82.0 bits (201), Expect = 4e-13
Identities = 36/36 (100%), Positives = 36/36 (100%)
Frame = +2
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36