BLASTX nr result

ID: Cnidium21_contig00000417 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cnidium21_contig00000417
         (1591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277445.2| PREDICTED: splicing factor U2af small subuni...   286   1e-74
ref|XP_002528581.1| U2 snrnp auxiliary factor, small subunit, pu...   280   1e-72
gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]                  270   6e-70
ref|XP_003540217.1| PREDICTED: splicing factor U2af small subuni...   258   4e-66
ref|XP_004143302.1| PREDICTED: splicing factor U2af small subuni...   250   8e-64

>ref|XP_002277445.2| PREDICTED: splicing factor U2af small subunit B-like [Vitis vinifera]
          Length = 343

 Score =  286 bits (732), Expect = 1e-74
 Identities = 153/278 (55%), Positives = 178/278 (64%), Gaps = 18/278 (6%)
 Frame = +3

Query: 291  PLDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQ 470
            PLDPRKIQ+H            SKYGE+ESLNICDNLADHMVGNVY QFREEEHAA A++
Sbjct: 68   PLDPRKIQEHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALR 127

Query: 471  SLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGK 650
            +L GRFYAGRPIIVDFSPVTDFREATCRQYEEN+CNRGGYCNFMHLKKISRELRRQLFG+
Sbjct: 128  NLNGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNFMHLKKISRELRRQLFGR 187

Query: 651  NXXXXXXXXXXXPQHNRGYDERPH--------------XXXXXXXXXXDYADHRQND-XX 785
            N           P  +RG++E PH                        D  DHR +D   
Sbjct: 188  NRRRRSRSRSRSPYRHRGHEEHPHGPHGPHGPHGPHGPRGPRGSNRRDDDRDHRYHDRGG 247

Query: 786  XXXXXXXXXXXXXXXXXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNKSANNYSN 965
                                +RNKSPVREGSAERRAKIEQWNRER+QA+  NK+ N++S+
Sbjct: 248  RRPRSRSPARRGGRSRSPGGRRNKSPVREGSAERRAKIEQWNREREQAEATNKNDNSHSD 307

Query: 966  DDRNSDGGNGKQNDQEQYYDP-HQK--RQNGPDDGGYS 1070
               N +  N  + D +QYY+P HQ+  +Q     GGY+
Sbjct: 308  ---NGNNNNDFEQDDQQYYNPQHQEEDQQQQQQHGGYN 342



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 59  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36


>ref|XP_002528581.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
            gi|223531977|gb|EEF33789.1| U2 snrnp auxiliary factor,
            small subunit, putative [Ricinus communis]
          Length = 313

 Score =  280 bits (715), Expect = 1e-72
 Identities = 143/245 (58%), Positives = 164/245 (66%), Gaps = 2/245 (0%)
 Frame = +3

Query: 294  LDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQS 473
            LDPRKIQDH            SKYG++ESLNICDNLADHMVGNVY QFREE+HAA A+++
Sbjct: 71   LDPRKIQDHFEDFYQDLFEELSKYGDIESLNICDNLADHMVGNVYVQFREEDHAANALRN 130

Query: 474  LTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGKN 653
            L GRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRR+LFG+N
Sbjct: 131  LNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRN 190

Query: 654  XXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXDYADHRQNDXXXXXXXXXXXXXXXXXX 833
                       P  +RGYDERPH          D A H  ++                  
Sbjct: 191  RRRRSRSRSHSPSRHRGYDERPHGGRGFGRRDDDRAHH--HERGRRPRSRSPGRRGGRSR 248

Query: 834  XXXXKRNKS-PVREGSAERRAKIEQWNRERDQADTGNKSANNYSND-DRNSDGGNGKQND 1007
                +RN+S PVRE SAERRAKIEQWNRER+Q ++GN+   N  ND + N D  NG   D
Sbjct: 249  SPAGRRNRSPPVRESSAERRAKIEQWNREREQTESGNRDGQNLDNDRNSNGDAKNGGHYD 308

Query: 1008 QEQYY 1022
             +Q++
Sbjct: 309  DDQHH 313



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 59  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36


>gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]
          Length = 310

 Score =  270 bits (691), Expect = 6e-70
 Identities = 142/249 (57%), Positives = 163/249 (65%)
 Frame = +3

Query: 291  PLDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQ 470
            PLDPRKIQ H            SKYGE+ESLNICDNLADHMVGNVY QFREEEHA  A++
Sbjct: 68   PLDPRKIQQHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEEHAGEALR 127

Query: 471  SLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGK 650
            +L+GRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFG+
Sbjct: 128  NLSGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGR 187

Query: 651  NXXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXDYADHRQNDXXXXXXXXXXXXXXXXX 830
                        PQ +RG+ +RPH          D  + R +D                 
Sbjct: 188  YRRRHSRSRSRSPQAHRGHGDRPHGGRGYGRRDDD-RNQRYHD-KGRRPRSRSPGHRGRS 245

Query: 831  XXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNKSANNYSNDDRNSDGGNGKQNDQ 1010
                 +R++SPVRE S ERRAKI QWNRE++QADTGN   N+    D   +  NG Q++ 
Sbjct: 246  RSPPGRRDRSPVRENSEERRAKIAQWNREKEQADTGNNDVNH----DVTDNHANGFQDNG 301

Query: 1011 EQYYDPHQK 1037
            E YYD  Q+
Sbjct: 302  EDYYDHPQQ 310



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 59  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36


>ref|XP_003540217.1| PREDICTED: splicing factor U2af small subunit A-like [Glycine max]
          Length = 315

 Score =  258 bits (658), Expect = 4e-66
 Identities = 131/243 (53%), Positives = 156/243 (64%), Gaps = 1/243 (0%)
 Frame = +3

Query: 291  PLDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQ 470
            P+DPRKIQDH            SKYG++ESLN+CDNLADHMVGNVY QFREEEHAA AV+
Sbjct: 68   PIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEEHAANAVR 127

Query: 471  SLTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGK 650
            +LTGRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLK+ISRELRRQLFGK
Sbjct: 128  NLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRELRRQLFGK 187

Query: 651  NXXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXDYADHRQNDXXXXXXXXXXXXXXXXX 830
            +           P  +R ++ER H          D+  H                     
Sbjct: 188  SHGRHSRSRSRSPYRHRSHEERSHRSHSRKYDDRDH-HHESRSRRHRSTSPRHRRGRSRS 246

Query: 831  XXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNK-SANNYSNDDRNSDGGNGKQND 1007
                 +R+ SPVR+GS ERRA+IEQWNRER+  + G K +A   +N + +   G+ +Q  
Sbjct: 247  RSPGGRRHHSPVRDGSEERRARIEQWNREREDQEPGYKVNAEEINNGNASKHHGHQQQEQ 306

Query: 1008 QEQ 1016
            + Q
Sbjct: 307  EPQ 309



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 59  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36


>ref|XP_004143302.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
            sativus]
          Length = 317

 Score =  250 bits (638), Expect = 8e-64
 Identities = 134/254 (52%), Positives = 156/254 (61%), Gaps = 6/254 (2%)
 Frame = +3

Query: 294  LDPRKIQDHXXXXXXXXXXXXSKYGELESLNICDNLADHMVGNVYAQFREEEHAAAAVQS 473
            LDPRK+QDH            SKYG+LESLNICDNLADHMVGNVY QFREEE AA A+ +
Sbjct: 69   LDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEEQAANALHN 128

Query: 474  LTGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRQLFGKN 653
            L GRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRR+LFG++
Sbjct: 129  LNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRS 188

Query: 654  --XXXXXXXXXXXPQHNRGYDERPHXXXXXXXXXXD----YADHRQNDXXXXXXXXXXXX 815
                         P  + GY+ER H                 D R +D            
Sbjct: 189  RRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEKDPRYHDRSRRPRSRSPRH 248

Query: 816  XXXXXXXXXXKRNKSPVREGSAERRAKIEQWNRERDQADTGNKSANNYSNDDRNSDGGNG 995
                      +RN+SPVRE SAERRAKIEQWNR+R++ D G+      ++ D    GG+ 
Sbjct: 249  RGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKEDNGS------NHQDVKDVGGSN 302

Query: 996  KQNDQEQYYDPHQK 1037
                 E  +DP ++
Sbjct: 303  DLVQNEDEFDPSKQ 316



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 59  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 166
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRL 36


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