BLASTX nr result
ID: Cnidium21_contig00000196
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00000196
(7233 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 3619 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1233 0.0
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 951 0.0
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v... 917 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 508 e-140
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
[Strawberry latent ringspot virus]
Length = 2227
Score = 3619 bits (9384), Expect = 0.0
Identities = 1781/2229 (79%), Positives = 1933/2229 (86%), Gaps = 20/2229 (0%)
Frame = -2
Query: 7061 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 6882
MGYSRGSRG ADK KLCGICFA FPDAQERK HYRKYNCRDS GQLGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6881 KNLQVERXXXXXXXXXXXXXXXXXXXXXFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 6702
+NL+VE FMS+L +F F I+ G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6701 YAGRKILKAKGLDVEEYAKFQAPKAGA--RNFLQPNRRTDVEVLTTIVRTAIENPGFGNP 6528
Y R I +A GLDV +YA FQ K R FL +R+ D EVLT++VRTAI GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6527 SFDYTGLGGDEFKYXXXXXXXXXXXXXXXXXFVSAGFTEGSKPNVFDVAPLTSGDFNVMM 6348
+FDYTGLGGD KY FVSAGFTE +K ++ LT D + M
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTKGSLD--LKLTLQDVDEMT 238
Query: 6347 RALSDEWVEWCYFEEDYEEALTEGFELFFSPHNGVETLKSSFGSG--------------- 6213
+ALSDEW EW YFEED EE L E + + LK
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 6212 --PLSPTCVLDSADSYLSGTKWVYDSDEEEYVPVAPVDRFHNKKFNLDFIDYCDLEYIEQ 6039
P+SP VL SA+SYLSGTKW YDS++E+Y+PVAP+D+FHNKK ++DF+D CD EY Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 6038 PVGSLRTETWFIDGCLPGPWFKRGALIDEAVVCEKLPLIGKSPLELMIQYQVAPTGDLLL 5859
P G++ TETWFIDGCLPG WFKRG IDEAVVCEKLPLIGK+PLELMIQYQV PTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5858 DIQRALFAYYEREALPNKKFFDLNGVPTLLVFEDWRADLRYCLFAPFIPGNQLKHLMVVI 5679
DIQRALFAYYE+EALPNKK+F+LNGVPT++V EDWR DLRYCL+APFI G+QLKHLMVV+
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5678 DSPLPGWLLDFPKRQRSGLLQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 5499
++PLPGWL+DFPKR++SG+LQASGWNPLRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5498 VWDLVIKAKDYAFSMLDEMISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVGKLGVP 5319
VWDL+IKAKD+AF L++MI KRGEIL+ALLQPLLYV G L+FLGSLKGL+TIV G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 5318 LAVLTAAAIGIGVYILVQFLGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILVE 5139
LA+LT AAIG+GVY+LV FLG AHMGALKRSTKIW+LVQ WDKPSEVKCID +II++LVE
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 5138 ESPEKEEWLRELMASPHSVPECVIDLTHMKDLLGG-KCSTFKEAFEVGAPVASSPGMLFG 4962
ESP+KEEW+REL+ASPH VPECVIDLTHMKDLL KC+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4961 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGG 4782
SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG
Sbjct: 719 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778
Query: 4781 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 4602
KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779 KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838
Query: 4601 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYXX 4422
SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQY
Sbjct: 839 SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898
Query: 4421 XXXXXXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 4242
DYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958
Query: 4241 XXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCKRAFENRRLILAEVTAVEGGR 4062
LEAKGNTCCTSDFVFITANQAGLTPSAV+HCK+AFENRRLILAEVTAVEGGR
Sbjct: 959 PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018
Query: 4061 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYAVNQSKQHFSEQVDLRDAPHTQIFSAA 3882
YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF+AA
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078
Query: 3881 DQIAAEAEEGFQTAGIKIPFCMLKSLSGDQLTYYSEEKMMEVTETLAPEDADIIRSRLDP 3702
DQIAAEAEEGF+TAGI IPFCMLK + G +TYY EEK E+T L+ DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138
Query: 3701 GMITQQLQALLPKAAYVNLKNHFSLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLE 3522
MITQ+LQ LLPKAAYVNLKNHF LGTDPFEQPNPYFNCSQRAKVIGRF+KPKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198
Query: 3521 HHKRGFMMIAKELAQGAYKAVSDAPFLVKLLLGFGALYFVGAPLLSWLKSLYTAPCLLTF 3342
KRGF+ + KELAQGA +A+SDAPFLVKLLLGFGALYFVG P+L WLKSLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258
Query: 3341 TTLGAMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPGAVEAKAQDVETELASLSKHL 3162
LG M+ASGSLSSSQDQ RYLLEASGPGA+EAK QDVETELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318
Query: 3161 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLTKTFPFTVNRKHCRFQR 2982
+GFTSID+PDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSL+KTFPFTVNRK+C+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378
Query: 2981 LGLKDLVIIDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFMEMLFQKNGVLEVAREEAD 2802
+GLKDLVI+DFPPTFVSFPVLKLEKWLL+SHDPFMAGSGWFMEM+FQ+NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438
Query: 2801 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGKGKGL 2622
YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYGKGKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498
Query: 2621 KIASIHVVHHFSATEKDTIIAGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGE 2442
KIASIHVVHHFSATEKDTIIAGSGSL+TKEEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558
Query: 2441 EFFDAETVFPEGLLQPSDAPRQATSSEIKKSSISADLEMLTGEKRKTEPAIIHNRDTRLH 2262
EFFDAETVFPEGLL PS APRQATSSEI KSSIS LE L GEKRKTEPAII NRDTRL
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618
Query: 2261 DRHLDIFKKGMMKYKAVAADMSPVTEDEEKIWNLTWDSIFDLPGGIASKCHLLSEDENLN 2082
DR+LDIFKKGMMKYKAVAADMSPVT++EEKIWN+TWDSIFDLPGGI SKCHLLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678
Query: 2081 GVNGDNEYRGMVVTTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRIVDMDE 1902
GVNGDNEYRGMVV+TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRI+D+D
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738
Query: 1901 LCKTTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1722
L TTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798
Query: 1721 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLVEISRRITLLYGD 1542
N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLL+EIS RIT LYGD
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858
Query: 1541 DQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 1362
+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918
Query: 1361 SSLFFSDCVELAVVGDDNLVSVKQIAAADFNLKKLSSFLAGFGFTLKDGSDKNKEILPEF 1182
SSLFF+DCVELAVVGDDNLVSVKQ+AA DFNLKKLS+FLAGFGFTLKDGSDKNKEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978
Query: 1181 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNSAATQNNVEGFLRELFH 1002
NPPEKCDFLKRCFKARGDRYLAP LHWVRETNM+N+AATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038
Query: 1001 YGDKELYCKWRRDLIDLCSRNRVPHPTTYSFEELERSWLSGKTVASIFEKEEPEVIVIRD 822
YGDKELYCKWRRDLI LC+ NRVPHPT+YSFEELERSWLSGKTVASIFEKEEPE++V++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098
Query: 821 GASDIAPDVHIIPVQQCLKWRSDEVPNVVWCGPNCPNQLKNASTCFQIQAPQGSKYPLRS 642
ASD+AP+VHI+P Q CLKW+ +EVP VVWCGPNCPNQL+NA+ CF IQAPQGS+YPLRS
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158
Query: 641 TIRNFLKKVHQRGDKVYFTGAINQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLL 462
T+RN LK+VHQR D+VYF GA++QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218
Query: 461 ESTIAAKGW 435
E+ AAKGW
Sbjct: 2219 EAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1233 bits (3191), Expect = 0.0
Identities = 590/675 (87%), Positives = 628/675 (93%)
Frame = -2
Query: 2459 GCLSGEEFFDAETVFPEGLLQPSDAPRQATSSEIKKSSISADLEMLTGEKRKTEPAIIHN 2280
GCLSG+EFFDAETVFPEGLL PS APRQATSSEI KSSIS LE L GEKRKTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 2279 RDTRLHDRHLDIFKKGMMKYKAVAADMSPVTEDEEKIWNLTWDSIFDLPGGIASKCHLLS 2100
RDTRL DR+LDIFKKGMMKYKAVAADMSPVT++EEKIWN+TWDSIFDLPGGI SKCHLLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 2099 EDENLNGVNGDNEYRGMVVTTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 1920
EDENLNGVNGDNEYRGMVV+TSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 1919 IVDMDELCKTTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 1740
I+D+D L TTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 1739 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLVEISRRI 1560
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLL+EIS RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 1559 TLLYGDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 1380
T LYGD+ +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 1379 EHMMASSSLFFSDCVELAVVGDDNLVSVKQIAAADFNLKKLSSFLAGFGFTLKDGSDKNK 1200
EHMMASSSLFF+DCVELAVVGDDNLVSVKQ+AA DFNLKKLS+FLAGFGFTLKDGSDKNK
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 1199 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNSAATQNNVEGF 1020
EILPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETNM+N+AATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 1019 LRELFHYGDKELYCKWRRDLIDLCSRNRVPHPTTYSFEELERSWLSGKTVASIFEKEEPE 840
LRELFHYGDKELYCKWRRDLI LC+ NRVPHPT+YSFEELERSWLSGKTVASIFEKEEPE
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 839 VIVIRDGASDIAPDVHIIPVQQCLKWRSDEVPNVVWCGPNCPNQLKNASTCFQIQAPQGS 660
++V++D ASD+AP+VHI+P Q CLKW+ +EVP VVWCGPNCPNQL+NA+ CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 659 KYPLRSTIRNFLKKVHQRGDKVYFTGAINQSLVHWVAAFYASMYRESFHHSAYMKAYFGD 480
+YPLRST+RN LK+VHQR D+VYF GA++QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 479 NDAGLLESTIAAKGW 435
ND GLLE+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 951 bits (2459), Expect = 0.0
Identities = 468/548 (85%), Positives = 495/548 (90%)
Frame = -2
Query: 4958 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGGK 4779
GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60
Query: 4778 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 4599
SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61 SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120
Query: 4598 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYXXX 4419
RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQY
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180
Query: 4418 XXXXXXDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 4239
DYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240
Query: 4238 XXXXXXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCKRAFENRRLILAEVTAVEGGRY 4059
LEAKGNTCCTSDFVFITANQAGLTPSAV+HCK+AFENRRLILAEVTAVEGGRY
Sbjct: 241 LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300
Query: 4058 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYAVNQSKQHFSEQVDLRDAPHTQIFSAAD 3879
RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF+AAD
Sbjct: 301 RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360
Query: 3878 QIAAEAEEGFQTAGIKIPFCMLKSLSGDQLTYYSEEKMMEVTETLAPEDADIIRSRLDPG 3699
QIAAEAEEGF+TAGI IPFCMLK + G +TYY EEK E+T L+ DADII SRLDP
Sbjct: 361 QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420
Query: 3698 MITQQLQALLPKAAYVNLKNHFSLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEH 3519
MITQ+LQ LLPKAAYVNLKNHF LGTDPFEQPNPYFNCSQRAKVIGRF+KPKVTE QLE
Sbjct: 421 MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480
Query: 3518 HKRGFMMIAKELAQGAYKAVSDAPFLVKLLLGFGALYFVGAPLLSWLKSLYTAPCLLTFT 3339
KRGF+ + KELAQGA +A+SDAPFLVKLLLGFGALYFVG P+L WLKSLY+AP L+TF
Sbjct: 481 SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540
Query: 3338 TLGAMKAS 3315
LG M+AS
Sbjct: 541 ALGTMRAS 548
>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
Length = 719
Score = 917 bits (2370), Expect = 0.0
Identities = 466/721 (64%), Positives = 539/721 (74%), Gaps = 20/721 (2%)
Frame = -2
Query: 7061 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 6882
MGYSRGSRG ADK KLCGICFA FPDAQERK HYRKYNCRDS GQLGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6881 KNLQVERXXXXXXXXXXXXXXXXXXXXXFMSELMDFIAPFPFPGISFGTVSMTDPKIGSS 6702
+NL+VE FMS+L +F F I+ G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6701 YAGRKILKAKGLDVEEYAKFQAPKAGA--RNFLQPNRRTDVEVLTTIVRTAIENPGFGNP 6528
Y R I +A GLDV +YA FQ K R FL +R+ D EVLT++VRTAI GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6527 SFDYTGLGGDEFKYXXXXXXXXXXXXXXXXXFVSAGFTEGSKPNVFDVAPLTSGDFNVMM 6348
+FDYTGLGGD KY FVSAGFTE +K ++ LT D + M
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTKGSLD--LKLTLQDVDEMT 238
Query: 6347 RALSDEWVEWCYFEEDYEEALTEGFELFFSPHNGVETLKSSFGSG--------------- 6213
+ALSDEW EW YFEED EE L E + + LK
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 6212 --PLSPTCVLDSADSYLSGTKWVYDSDEEEYVPVAPVDRFHNKKFNLDFIDYCDLEYIEQ 6039
P+SP VL SA+SYLSGTKW YDS++E+Y+PVAP+D+FHNKK ++DF+D CD EY Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 6038 PVGSLRTETWFIDGCLPGPWFKRGALIDEAVVCEKLPLIGKSPLELMIQYQVAPTGDLLL 5859
P G++ TETWFIDGCLPG WFKRG IDEAVVCEKLPLIGK+PLELMIQYQV PTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5858 DIQRALFAYYEREALPNKKFFDLNGVPTLLVFEDWRADLRYCLFAPFIPGNQLKHLMVVI 5679
DIQRALFAYYE+EALPNKK+F+LNGVPT++V EDWR DLRYCL+APFI G+QLKHLMVV+
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5678 DSPLPGWLLDFPKRQRSGLLQASGWNPLRYFSKQATLGFLDGVVAKLRELLGPVINAAGY 5499
++PLPGWL+DFPKR++SG+LQASGWNPLRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5498 VWDLVIKAKDYAFSMLDEMISKRGEILRALLQPLLYVSGFLIFLGSLKGLQTIVGKLGVP 5319
VWDL+IKAKD+AF L++MI KRGEIL+ALLQPLLYV G L+FLGSLKGL+TIV G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 5318 LAVLTAAAIGIGVYILVQFLGHAHMGALKRSTKIWELVQKWDKPSEVKCIDGEIIDILVE 5139
LA+LT AAIG+GVY+LV FLG AHMGALKRSTKIW+LVQ WDKPSEVKCID +II++LVE
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 5138 ESPEKEEWLRELMASPHSVPECVIDLTHMKDLLG-GKCSTFKEAFEVGAPVASSPGMLFG 4962
ESP+KEEW+REL+ASPH VPECVIDLTHMKDLL KC+ FK+AFEVGA ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4961 S 4959
S
Sbjct: 719 S 719
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 508 bits (1307), Expect = e-140
Identities = 241/257 (93%), Positives = 255/257 (99%)
Frame = -2
Query: 3230 GPGAVEAKAQDVETELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELHSGC 3051
GPGA+EAK QDVETELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLELHSGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 3050 YKVGSLTKTFPFTVNRKHCRFQRLGLKDLVIIDFPPTFVSFPVLKLEKWLLSSHDPFMAG 2871
YKVGSL+KTFPFTVNRK+C+FQR+GLKDLVI+DFPPTFVSFPVLKLEKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 2870 SGWFMEMLFQKNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 2691
SGWFMEM+FQ+NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 2690 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLITKEEYLEASL 2511
NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSL+TKEEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 2510 LLGEIKHPLETDRIQAS 2460
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257