BLASTX nr result
ID: Cnidium21_contig00000125
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cnidium21_contig00000125
(6956 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot... 3583 0.0
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus] 1220 0.0
ref|YP_227370.1| helicase [Strawberry latent ringspot virus] 952 0.0
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v... 905 0.0
ref|YP_227372.1| protease [Strawberry latent ringspot virus] 495 e-137
>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
[Strawberry latent ringspot virus]
Length = 2227
Score = 3583 bits (9290), Expect = 0.0
Identities = 1764/2229 (79%), Positives = 1922/2229 (86%), Gaps = 24/2229 (1%)
Frame = -3
Query: 6720 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 6541
MGYSRGSRG ADK KLCGICFA FPDAQERK HYRKYNCRDS GQLGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6540 KNLQVERXXXXXXXXXXXXXXXXXXXXXFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 6361
+NL+VE FMS+L +F F I+ G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6360 YAGRKILKAKGLDVEEYAKFQAPKAG--VRNFLQPNCRTDVEVLTTIVRTAIENPGFGNP 6187
Y R I +A GLDV +YA FQ K R FL + + D EVLT++VRTAI GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6186 SFDYTGLGGDEFKYXXXXXXXXXXXXXXXXXFVSAGFTEGSKSNVFDVAPLTSGDFKVMI 6007
+FDYTGLGGD KY FVSAGFTE +K ++ LT D M
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTKGSLD--LKLTLQDVDEMT 238
Query: 6006 QALSDEWSEWIYFEEDYEEALSEEFEIFFPFLESAKVCE------------------PA- 5884
QALSDEW+EW+YFEED EE L E + + + PA
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 5883 --PLSPTSVLDSADSYLPGTKWVYDSDEEDHVPVAPIDRFHNKKFDLDFEDYCDTEYLEQ 5710
P+SP +VL SA+SYL GTKW YDS++ED++PVAP+D+FHNKK D+DF D CDTEY Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 5709 PAGTVHTETWFIDGCLPGPWFKRGVSLDEAIICEKLPLIGKSPLELMIQYQVKPTGDLLL 5530
P+GT++TETWFIDGCLPG WFKRGV++DEA++CEKLPLIGK+PLELMIQYQV+PTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5529 DVQRALFAYYEKEARPNKKHFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMVIV 5350
D+QRALFAYYEKEA PNKK+F+LNGVPTM+V EDWRCDLRYCLYAPF+QG+QLKHLMV++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5349 DAPLPGWLLDFPKRQKSGALQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGY 5170
+APLPGWL+DFPKR+KSG LQASGWNPLRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5169 VWDLIIKAKDYAFAMLDEMISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 4990
VWDLIIKAKD+AF L++MI KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 4989 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSXXXXXXXXXXXXXXX 4810
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PS
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 4809 ESPEKEEWLRELMASPHSIPECVIDLTHMKDLLGG-KCSSFKEAFEVGTSVASSPGMLFG 4633
ESP+KEEW+REL+ASPH +PECVIDLTHMKDLL KC++FK+AFEVG S ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4632 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 4453
SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG
Sbjct: 719 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778
Query: 4452 KSEFLDYIYATIGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 4273
KSEFLDYIYAT+GVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779 KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838
Query: 4272 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 4093
SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839 SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898
Query: 4092 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 3913
DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 899 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958
Query: 3912 XXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGR 3733
LEAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959 PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018
Query: 3732 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXX 3553
YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078
Query: 3552 XXXXXXXXEGFQTAGIKVPFTMLKSLSGDQLTYYSEEKMMEITETLTPEDANIIRSRLDP 3373
EGF+TAGI +PF MLK + G +TYY EEK E+T L+ DA+II SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138
Query: 3372 GVITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLE 3193
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF+KPKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198
Query: 3192 QHKRGFVIIAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTTPCLLTF 3013
KRGF+ + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+ P L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258
Query: 3012 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPGAVEAKAQDVESELASLSKHL 2833
A LGTM+ASGSLSSSQDQ RYLLEASGPGA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318
Query: 2832 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 2653
+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378
Query: 2652 LGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAGSGWFMEMLFRDHGVLEVAREEAD 2473
+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAGSGWFMEM+F+ +GVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438
Query: 2472 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRSDFFYVSQCGTPLVANYGRGKGL 2293
YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR+DFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498
Query: 2292 KIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGE 2113
KIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558
Query: 2112 EFFDAETVFPEGLLEPSEAPRQATTSEIRKSSISADLEALTGEKKKTEPAIIHNRDTRLY 1933
EFFDAETVFPEGLL PS+APRQAT+SEI KSSIS LE L GEK+KTEPAII NRDTRL
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618
Query: 1932 DRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIEKKCHLLSEDENLN 1753
DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI+ KCHLLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678
Query: 1752 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 1573
GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738
Query: 1572 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1393
L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798
Query: 1392 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 1213
N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858
Query: 1212 DQGNRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 1033
+ RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918
Query: 1032 TSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNKEVLPEF 853
+SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNKE+LPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978
Query: 852 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAAATQNNVEGFLRELFH 673
NPPEKCDFLKRCFKARGDRYLAP LHWVRETNM+NAAATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038
Query: 672 YGDKNLYCKWRRDLIDLCSKNHVPHPTTYSFEELERSWLSGKSVASIFEKEEPEIIVIRD 493
YGDK LYCKWRRDLI LC++N VPHPT+YSFEELERSWLSGK+VASIFEKEEPEI+V++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098
Query: 492 SASDVAPGVHIVPVRQCLKWNAGEVPNVVWCGPNCPNQLRNASSCFQIQAPQGSKYPLRN 313
+ASDVAP VHIVP + CLKW EVP VVWCGPNCPNQLRNA+ CF IQAPQGS+YPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158
Query: 312 TTRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGDNDAGLL 133
T RN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218
Query: 132 ESTMAAKGW 106
E+ AAKGW
Sbjct: 2219 EAVTAAKGW 2227
>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
Length = 675
Score = 1220 bits (3157), Expect = 0.0
Identities = 586/675 (86%), Positives = 623/675 (92%)
Frame = -3
Query: 2130 GCLSGEEFFDAETVFPEGLLEPSEAPRQATTSEIRKSSISADLEALTGEKKKTEPAIIHN 1951
GCLSG+EFFDAETVFPEGLL PS+APRQAT+SEI KSSIS LE L GEK+KTEPAII N
Sbjct: 1 GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60
Query: 1950 RDTRLYDRHLDIFKKGMLKYKAVAADMSPVTEEEQKIWDLTWDSIFDLPGGIEKKCHLLS 1771
RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EE+KIW++TWDSIFDLPGGI+ KCHLLS
Sbjct: 61 RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120
Query: 1770 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 1591
EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180
Query: 1590 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 1411
ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181 ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240
Query: 1410 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 1231
ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241 ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300
Query: 1230 TLLYNDDQGNRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 1051
T LY D+ RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301 TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360
Query: 1050 EHMMASTSLFFSDCVELAVVGDDNLVSVKEVAASDFNLKKLSAFLADFGFTLKDGSDKNK 871
EHMMAS+SLFF+DCVELAVVGDDNLVSVK+VAA DFNLKKLSAFLA FGFTLKDGSDKNK
Sbjct: 361 EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420
Query: 870 EVLPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAAATQNNVEGF 691
E+LPEFNPPEKCDFLKRCFKARGDRYLAP LHWVRETNM+NAAATQNNVEGF
Sbjct: 421 EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480
Query: 690 LRELFHYGDKNLYCKWRRDLIDLCSKNHVPHPTTYSFEELERSWLSGKSVASIFEKEEPE 511
LRELFHYGDK LYCKWRRDLI LC++N VPHPT+YSFEELERSWLSGK+VASIFEKEEPE
Sbjct: 481 LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540
Query: 510 IIVIRDSASDVAPGVHIVPVRQCLKWNAGEVPNVVWCGPNCPNQLRNASSCFQIQAPQGS 331
I+V++D+ASDVAP VHIVP + CLKW EVP VVWCGPNCPNQLRNA+ CF IQAPQGS
Sbjct: 541 IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600
Query: 330 KYPLRNTTRNLLKKVHQRGDEVYFTGSLNQSLVHWVAAFYASMYRESFHHSAYMKAYFGD 151
+YPLR+T RN LK+VHQR DEVYF G+L+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601 RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660
Query: 150 NDAGLLESTMAAKGW 106
ND GLLE+ AAKGW
Sbjct: 661 NDKGLLEAVTAAKGW 675
>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
Length = 548
Score = 952 bits (2462), Expect = 0.0
Identities = 467/548 (85%), Positives = 496/548 (90%)
Frame = -3
Query: 4629 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 4450
GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60
Query: 4449 SEFLDYIYATIGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 4270
SEFLDYIYAT+GVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61 SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120
Query: 4269 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 4090
RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121 RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180
Query: 4089 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 3910
DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR
Sbjct: 181 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240
Query: 3909 XXXXXXXLEAKGNTCCTSDFVFITANQAGLTPGAVVHCKKAFENRRLILAEVTAVEGGRY 3730
LEAKGNTCCTSDFVFITANQAGLTP AV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241 LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300
Query: 3729 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQIFXXXX 3550
RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQIF
Sbjct: 301 RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360
Query: 3549 XXXXXXXEGFQTAGIKVPFTMLKSLSGDQLTYYSEEKMMEITETLTPEDANIIRSRLDPG 3370
EGF+TAGI +PF MLK + G +TYY EEK E+T L+ DA+II SRLDP
Sbjct: 361 QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420
Query: 3369 VITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFMKPKVTEEQLEQ 3190
+ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRF+KPKVTE QLE
Sbjct: 421 MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480
Query: 3189 HKRGFVIIAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTTPCLLTFA 3010
KRGF+ + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+ P L+TFA
Sbjct: 481 SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540
Query: 3009 TLGTMKAS 2986
LGTM+AS
Sbjct: 541 ALGTMRAS 548
>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
Length = 719
Score = 905 bits (2339), Expect = 0.0
Identities = 460/721 (63%), Positives = 534/721 (74%), Gaps = 24/721 (3%)
Frame = -3
Query: 6720 MGYSRGSRGKADKAKLCGICFAPFPDAQERKVHYRKYNCRDSSGQLGGLVSTGRCAGMKE 6541
MGYSRGSRG ADK KLCGICFA FPDAQERK HYRKYNCRDS GQLGGLVSTGRCA KE
Sbjct: 1 MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60
Query: 6540 KNLQVERXXXXXXXXXXXXXXXXXXXXXFMSELMDFIAPFPFPGISFGTVSMTVPKIGSS 6361
+NL+VE FMS+L +F F I+ G S
Sbjct: 61 RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120
Query: 6360 YAGRKILKAKGLDVEEYAKFQAPKAG--VRNFLQPNCRTDVEVLTTIVRTAIENPGFGNP 6187
Y R I +A GLDV +YA FQ K R FL + + D EVLT++VRTAI GFG+P
Sbjct: 121 YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180
Query: 6186 SFDYTGLGGDEFKYXXXXXXXXXXXXXXXXXFVSAGFTEGSKSNVFDVAPLTSGDFKVMI 6007
+FDYTGLGGD KY FVSAGFTE +K ++ LT D M
Sbjct: 181 TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTESTKGSLD--LKLTLQDVDEMT 238
Query: 6006 QALSDEWSEWIYFEEDYEEALSEEFEIFFPFLESAKVCE------------------PA- 5884
QALSDEW+EW+YFEED EE L E + + + PA
Sbjct: 239 QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298
Query: 5883 --PLSPTSVLDSADSYLPGTKWVYDSDEEDHVPVAPIDRFHNKKFDLDFEDYCDTEYLEQ 5710
P+SP +VL SA+SYL GTKW YDS++ED++PVAP+D+FHNKK D+DF D CDTEY Q
Sbjct: 299 ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358
Query: 5709 PAGTVHTETWFIDGCLPGPWFKRGVSLDEAIICEKLPLIGKSPLELMIQYQVKPTGDLLL 5530
P+GT++TETWFIDGCLPG WFKRGV++DEA++CEKLPLIGK+PLELMIQYQV+PTGDLLL
Sbjct: 359 PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418
Query: 5529 DVQRALFAYYEKEARPNKKHFDLNGVPTMLVFEDWRCDLRYCLYAPFVQGNQLKHLMVIV 5350
D+QRALFAYYEKEA PNKK+F+LNGVPTM+V EDWRCDLRYCLYAPF+QG+QLKHLMV++
Sbjct: 419 DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478
Query: 5349 DAPLPGWLLDFPKRQKSGALQASGWNPLRYFSKQATLGFLDGVIAKLRELLGPVINAAGY 5170
+APLPGWL+DFPKR+KSG LQASGWNPLRYFSKQATLGFLDGV+ KL+EL+GP+INAA +
Sbjct: 479 NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538
Query: 5169 VWDLIIKAKDYAFAMLDEMISKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 4990
VWDLIIKAKD+AF L++MI KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE G+P
Sbjct: 539 VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598
Query: 4989 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSXXXXXXXXXXXXXXX 4810
LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PS
Sbjct: 599 LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658
Query: 4809 ESPEKEEWLRELMASPHSIPECVIDLTHMKDLLG-GKCSSFKEAFEVGTSVASSPGMLFG 4633
ESP+KEEW+REL+ASPH +PECVIDLTHMKDLL KC++FK+AFEVG S ASSPGMLFG
Sbjct: 659 ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718
Query: 4632 S 4630
S
Sbjct: 719 S 719
>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
Length = 257
Score = 495 bits (1275), Expect = e-137
Identities = 235/257 (91%), Positives = 253/257 (98%)
Frame = -3
Query: 2901 GPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 2722
GPGA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1 GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60
Query: 2721 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKIEKWLLSSHDPFMAG 2542
YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLK+EKWLL+SHDPFMAG
Sbjct: 61 YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120
Query: 2541 SGWFMEMLFRDHGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 2362
SGWFMEM+F+ +GVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121 SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180
Query: 2361 SDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASL 2182
+DFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASL
Sbjct: 181 NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240
Query: 2181 LLGEIKHPLETDRIQAS 2131
LLG+IKHPLETDRIQAS
Sbjct: 241 LLGDIKHPLETDRIQAS 257