BLASTX nr result
ID: Cinnamomum25_contig00038781
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum25_contig00038781
(307 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 46 8e-07
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 45 9e-07
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 45 1e-06
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 44 1e-06
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 44 2e-06
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 44 2e-06
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 45 2e-06
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 44 2e-06
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 47 4e-06
ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892... 47 5e-06
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 45 5e-06
emb|CAN66898.1| hypothetical protein VITISV_037436 [Vitis vinifera] 39 8e-06
emb|CAN78761.1| hypothetical protein VITISV_003313 [Vitis vinifera] 45 9e-06
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 45 1e-05
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 45.8 bits (107), Expect(2) = 8e-07
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 11/54 (20%)
Frame = -1
Query: 190 QINKKFRLM-----------EFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
Q+NKK +++ +F FCK GI +H T T TPQ+NGV +RMN+ L
Sbjct: 546 QVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTPQQNGVAKRMNRTL 599
Score = 33.5 bits (75), Expect(2) = 8e-07
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKLMV 196
L++KDETF F WK +VE ++ KK+ +
Sbjct: 526 LKTKDETFERFCEWKELVENQVNKKVKI 553
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 45.1 bits (105), Expect(3) = 9e-07
Identities = 17/39 (43%), Positives = 29/39 (74%)
Frame = -1
Query: 178 KFRLMEFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
+F +FK++C+ GI++H T + TPQ+NGV +RMN+ +
Sbjct: 504 EFCSRQFKSYCRSEGIVRHYTVSHTPQQNGVVERMNRTI 542
Score = 31.2 bits (69), Expect(3) = 9e-07
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKLMV 196
L+ K E F+ FK WK MVE + +K+ V
Sbjct: 469 LKHKFEAFLVFKEWKTMVERQTERKVKV 496
Score = 21.9 bits (45), Expect(3) = 9e-07
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 48 LINRSPSITIDCK 10
LINRSPS ID K
Sbjct: 570 LINRSPSYAIDKK 582
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 44.7 bits (104), Expect(2) = 1e-06
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 11/54 (20%)
Frame = -1
Query: 190 QINKKFRLM-----------EFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
Q+NKK +++ +F +CK GI +H T T TPQ+NGV +RMN+ L
Sbjct: 532 QVNKKIKVLRTDNGLEFCNLKFDEYCKKNGIERHRTCTYTPQQNGVAERMNRTL 585
Score = 34.3 bits (77), Expect(2) = 1e-06
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKLMV 196
L++KDETF F WK +VE ++ KK+ V
Sbjct: 512 LKTKDETFDKFCEWKELVENQVNKKIKV 539
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 43.9 bits (102), Expect(2) = 1e-06
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 11/54 (20%)
Frame = -1
Query: 190 QINKKFRLME-----------FKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
Q+NKK + + F ++CK+ GI +H T T TPQ+NGV +RMN+ +
Sbjct: 555 QVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTI 608
Score = 34.7 bits (78), Expect(2) = 1e-06
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKL 202
L+SKDETF F WK++VE ++ KK+
Sbjct: 535 LKSKDETFDKFCEWKSLVENQVNKKV 560
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -1
Query: 163 EFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKMLPYR 53
+F FC+ GI++H T TPQ+NGV +RMN+ L R
Sbjct: 882 DFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQR 918
Score = 34.3 bits (77), Expect(2) = 2e-06
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGK 208
L++KDE F FK WK MVE++ GK
Sbjct: 842 LKAKDEVFGKFKEWKTMVEKRTGK 865
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -1
Query: 163 EFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKMLPYR 53
+F FC+ GI++H T TPQ+NGV +RMN+ L R
Sbjct: 669 DFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQR 705
Score = 34.3 bits (77), Expect(2) = 2e-06
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGK 208
L++KDE F FK WK MVE++ GK
Sbjct: 629 LKAKDEVFGKFKEWKTMVEKRTGK 652
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 45.1 bits (105), Expect(2) = 2e-06
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = -1
Query: 178 KFRLMEFKNFCKDLGIIQHSTFTRTPQENGVPQRMN 71
+F +F +FCK+ GI++H T TPQ+NGV +RMN
Sbjct: 555 EFCNQQFNDFCKEKGIVRHQTCAYTPQQNGVAERMN 590
Score = 33.1 bits (74), Expect(2) = 2e-06
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKLMV 196
L+ KDE F TF W MVE + G+K+ +
Sbjct: 520 LKHKDEAFGTFAEWSVMVENQTGRKIKI 547
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 43.9 bits (102), Expect(2) = 2e-06
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -1
Query: 163 EFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKMLPYR 53
+F FC+ GI++H T TPQ+NGV +RMN+ L R
Sbjct: 524 DFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQR 560
Score = 34.3 bits (77), Expect(2) = 2e-06
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGK 208
L++KDE F FK WK MVE++ GK
Sbjct: 484 LKAKDEVFGKFKEWKTMVEKRTGK 507
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 47.0 bits (110), Expect(2) = 4e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = -1
Query: 178 KFRLMEFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
+F EF FCKD GI +H T TPQ+NGV +RMN+ L
Sbjct: 543 EFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTL 581
Score = 30.0 bits (66), Expect(2) = 4e-06
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKL 202
++ K E F FK WK ++E + GKK+
Sbjct: 508 MKHKSEAFQKFKEWKILMENQTGKKI 533
>ref|XP_010676254.1| PREDICTED: uncharacterized protein LOC104892119 [Beta vulgaris
subsp. vulgaris]
Length = 1947
Score = 46.6 bits (109), Expect(2) = 5e-06
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -1
Query: 163 EFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
EF C+D GI++H T +TPQ+NGV +RMN+ L
Sbjct: 637 EFNELCRDAGIVRHRTVRKTPQQNGVAERMNQTL 670
Score = 30.0 bits (66), Expect(2) = 5e-06
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 270 KDETFITFKRWKAMVEEKIGKKL 202
K E F TF +WK +VE + GKK+
Sbjct: 600 KGEAFKTFVQWKVLVENQTGKKV 622
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 45.1 bits (105), Expect(2) = 5e-06
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = -1
Query: 178 KFRLMEFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
+F +F N CK+ GI +H T T TPQ+NGV +RMNK +
Sbjct: 454 EFYNTQFDNLCKEDGIKRHRTCTYTPQQNGVSERMNKTI 492
Score = 31.6 bits (70), Expect(2) = 5e-06
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKL 202
L++KDE + F+ WK VE + GKK+
Sbjct: 419 LKTKDEAYHKFREWKQAVENQTGKKI 444
>emb|CAN66898.1| hypothetical protein VITISV_037436 [Vitis vinifera]
Length = 1183
Score = 39.3 bits (90), Expect(2) = 8e-06
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = -1
Query: 160 FKNFCKDLGIIQHSTFTRTPQENGVPQRMNKMLPYRELD*QVSLHNY 20
F +C GI T RTPQ+NGV +RMN+ L R VS Y
Sbjct: 514 FSEYCAAQGIRMEKTIPRTPQQNGVAERMNRTLNERARTDAVSTATY 560
Score = 36.6 bits (83), Expect(2) = 8e-06
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKL 202
L++K + F+TFK+WKAMVE + G K+
Sbjct: 473 LKNKSDVFVTFKKWKAMVETETGLKV 498
>emb|CAN78761.1| hypothetical protein VITISV_003313 [Vitis vinifera]
Length = 836
Score = 44.7 bits (104), Expect(2) = 9e-06
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -1
Query: 163 EFKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
EF FCK+ GI++H T T TPQ+N V + MN++L
Sbjct: 691 EFNEFCKNEGIVRHHTVTNTPQQNXVAKXMNRIL 724
Score = 31.2 bits (69), Expect(2) = 9e-06
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = -2
Query: 270 KDETFITFKRWKAMVEEKIGKKL 202
K++ F FK+WKAM+E++ GK++
Sbjct: 654 KNDVFGKFKQWKAMIEKQTGKQI 676
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 45.1 bits (105), Expect(3) = 1e-05
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = -1
Query: 160 FKNFCKDLGIIQHSTFTRTPQENGVPQRMNKML 62
FK++CK GI++H T TPQ+NGV +RMN+ +
Sbjct: 537 FKSYCKSEGIVRHYTIPHTPQQNGVAERMNRTI 569
Score = 27.7 bits (60), Expect(3) = 1e-05
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 279 LQSKDETFITFKRWKAMVEEKIGKKLMV 196
L+ K + F FK WK MVE + +K+ +
Sbjct: 496 LKHKYQAFDVFKEWKTMVERQTERKVKI 523
Score = 21.9 bits (45), Expect(3) = 1e-05
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 48 LINRSPSITIDCK 10
LINRSPS ID K
Sbjct: 597 LINRSPSYAIDKK 609