BLASTX nr result

ID: Cinnamomum25_contig00029947 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00029947
         (909 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KEH40713.1| DUF4283 domain protein [Medicago truncatula]            43   1e-06
gb|KHN43790.1| Replication factor C subunit 3 [Glycine soja]           47   3e-06
gb|KHN05908.1| Transcription factor PIF1 [Glycine soja]                50   5e-06

>gb|KEH40713.1| DUF4283 domain protein [Medicago truncatula]
          Length = 576

 Score = 43.1 bits (100), Expect(2) = 1e-06
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +1

Query: 40  GIEGMKMAEPGGSQVLMTFADVAKALEIIKEYNFQFSEVFSSLERWLPGPNISIRRMWLR 219
           G+  + +   G + VL+   D     E     +  +  +F S++RW P      R +W+R
Sbjct: 140 GLNKIGVIPMGANMVLLKAEDPHLIEEAEGRSDPWWRGLFKSVKRWAPNLVSKQRLIWIR 199

Query: 220 CFGVPLHAWN 249
           CFG+PLH W+
Sbjct: 200 CFGLPLHVWD 209



 Score = 37.7 bits (86), Expect(2) = 1e-06
 Identities = 20/62 (32%), Positives = 35/62 (56%)
 Frame = +2

Query: 254 KVFEAIGEQFGEVVGVAKETEERLVLEYGRVCVQIRHHQFLNQVVNLDVFGIVFPISVWE 433
           K F+ +G  FGE V   +ET     ++ GR+ V      F+N+ + ++V G+VF + V E
Sbjct: 211 KTFKKMGALFGEFVDFDEETIGLNRVDMGRIYVLSSSMAFVNEKLRVEVMGVVFDVWVVE 270

Query: 434 DL 439
           ++
Sbjct: 271 EV 272


>gb|KHN43790.1| Replication factor C subunit 3 [Glycine soja]
          Length = 976

 Score = 47.4 bits (111), Expect(2) = 3e-06
 Identities = 20/60 (33%), Positives = 36/60 (60%)
 Frame = +1

Query: 70  GGSQVLMTFADVAKALEIIKEYNFQFSEVFSSLERWLPGPNISIRRMWLRCFGVPLHAWN 249
           G   VL+   +  KA+++++E +  + ++F SLE+W P      R  W+ C+G+PL AW+
Sbjct: 261 GDDMVLILGLNEEKAMKVMEEEDTGWGDLFISLEKWNPKLRPGYRLTWVHCWGIPLMAWD 320



 Score = 32.0 bits (71), Expect(2) = 3e-06
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +2

Query: 269 IGEQFGEVVGVAKETEERLVLEYGRVCVQIRHHQFLNQVVNLDVFGIVFPISVWEDLDVL 448
           I    GE+V    + E+   L+  R+ ++      +  VVN+ + G +F +++ E+  V 
Sbjct: 327 IVSSIGEMVEADDDVEDLRKLDMARILIKTPWKPLIQHVVNVQIEGEIFTVNIVEESGVS 386

Query: 449 C 451
           C
Sbjct: 387 C 387


>gb|KHN05908.1| Transcription factor PIF1 [Glycine soja]
          Length = 686

 Score = 49.7 bits (117), Expect(2) = 5e-06
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = +1

Query: 70  GGSQVLMTFADVAKALEIIKEYNFQFSEVFSSLERWLPGPNISIRRMWLRCFGVPLHAWN 249
           G  QVL+       A ++I   N   + +FSS+ERW P   +  R  W++C+G+P+ AWN
Sbjct: 265 GDDQVLLLGLSEYDANQLI---NGDRTFLFSSIERWHPNMRVDYRLTWIQCWGIPVQAWN 321

Query: 250 PE 255
           P+
Sbjct: 322 PK 323



 Score = 28.9 bits (63), Expect(2) = 5e-06
 Identities = 22/86 (25%), Positives = 38/86 (44%)
 Frame = +2

Query: 251 PKVFEAIGEQFGEVVGVAKETEERLVLEYGRVCVQIRHHQFLNQVVNLDVFGIVFPISVW 430
           PK F  I    GEVV +    EE+  ++  R+ ++ +    +   V + + G  F + + 
Sbjct: 322 PKHFNQIIAAMGEVVDIDDAVEEKRRVDKARLLIRTQWRPSIQHTVEVMIDGAKFMVHIN 381

Query: 431 EDLDVLCPLNHVSSIKGAGDGVLSEE 508
           E+    C   HV   + AG+   S E
Sbjct: 382 EE---SCQ-GHVGCSRRAGNAEGSSE 403


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