BLASTX nr result

ID: Cinnamomum25_contig00026082 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00026082
         (475 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDY11922.1| BnaC03g13480D [Brassica napus]                         62   1e-07
ref|XP_010932063.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...    59   1e-06
emb|CDX78281.1| BnaA09g34760D [Brassica napus]                         58   2e-06

>emb|CDY11922.1| BnaC03g13480D [Brassica napus]
          Length = 408

 Score = 62.0 bits (149), Expect = 1e-07
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 2/141 (1%)
 Frame = -3

Query: 452 KLPSWLFKYKSLVSLSLHKCPI-GVPKSVCFSSLLSLTITCIRMEAGSI-PALLAGSPLL 279
           +LP  L+  ++LVSL+L    I  VP ++CF SL +L +  +      I P +L+G P+L
Sbjct: 112 RLPGSLYTCQTLVSLTLFSAVIVDVPLTICFPSLKALRLRHVEFSNDEIVPRILSGCPVL 171

Query: 278 EELVLDKCELSSGRLRILPSSPASELRLKLLTITCCSNQSGDEIGLELRAPNLQMLNLCG 99
           E+L + +  +++G ++       S LRL +  +   S   GD+IGL + AP+L  L +  
Sbjct: 172 EDLAITR--VNNGNMKTFTIMIPSLLRLAVWDLKSGSQVPGDDIGLVITAPSLTSLTV-- 227

Query: 98  VKLYKNSLRNLISLREAYLNI 36
           V     SL N+ SL +A + +
Sbjct: 228 VSQVSCSLVNMPSLVKANIKL 248


>ref|XP_010932063.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Elaeis
           guineensis]
          Length = 458

 Score = 59.3 bits (142), Expect = 1e-06
 Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
 Frame = -3

Query: 461 HICKLPSWLFKYKSLVSLSLHKCPIGVPKSVC-FSSLLSLTITCIRMEAGSIPALLAGSP 285
           H  KLP  LFK KSL +LSL  C    P     F+ L SL+++ + +    +  ++A  P
Sbjct: 106 HPLKLPDCLFKCKSLTNLSLSHCDFCPPPDFSGFNGLQSLSLSYVSIADDMLHFMVANCP 165

Query: 284 LLEELVLDKCE-LSSGRLRILPSSPASELRLKLLTITCCSNQSGDEIGLELRAPNLQMLN 108
           LL+ L L  C+ L+S ++         +++++ LT+  C     D   +E+RAP L+   
Sbjct: 166 LLDSLSLKSCQNLNSIKV------SGEDIQIQRLTVIQC----WDAWEMEVRAPRLRSFI 215

Query: 107 LCGVKLYKNSLRNLISLREAYLN 39
             G  ++ +S  N+ SL +A+++
Sbjct: 216 YYGEHIFGDSSLNIPSLEDAFIS 238


>emb|CDX78281.1| BnaA09g34760D [Brassica napus]
          Length = 320

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%)
 Frame = -3

Query: 449 LPSWLFKYKSLVSLSLH-KCPIGVPKSVCFSSLLSLTITCIRMEAG-SIPALLAGSPLLE 276
           LPS L+  KSLV L L     + VP+ V   SL +L +  +R  +  ++P LL+  PLLE
Sbjct: 28  LPSNLYACKSLVVLKLDGDILLDVPQMVSLPSLKTLKLQSVRYSSDKTLPLLLSKCPLLE 87

Query: 275 ELVLDKCELSSGRLRILPSSPASELRLKLLTITCCSNQSGDEIGLELRAPNLQMLNLCGV 96
           +LVLD CE  + R  I+       L L +L     +N   D  G  L  P L+   L   
Sbjct: 88  DLVLDLCEDDTPRHLIVAVPSLQSLSLSIL----YNNHIID--GFVLTTPALKYFKLMDY 141

Query: 95  KLYKNSLRNLISLREAYLNIYCTKV 21
             +   + N+ +L EAYL++ C  +
Sbjct: 142 NEHYCLIENMPNLIEAYLDVDCPDI 166


Top