BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00025529
         (232 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC08937.1| RPB140 [Chloranthus spicatus]                          149   9e-34
gb|AAY85196.1| RNA polymerase II second largest subunit, partial...   147   2e-33
gb|AAY85220.1| RNA polymerase II second largest subunit, partial...   147   2e-33
gb|AAW22925.1| RNA polymerase II second largest subunit, partial...   147   3e-33
gb|AAW22924.1| RNA polymerase II second largest subunit, partial...   147   3e-33
gb|AAY85203.1| RNA polymerase II second largest subunit, partial...   147   3e-33
gb|AAY85235.1| RNA polymerase II second largest subunit, partial...   147   3e-33
gb|AAS86820.1| RNA polymerase II second largest subunit, partial...   147   3e-33
gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriode...   147   4e-33
gb|AAS86822.1| RNA polymerase II second largest subunit, partial...   147   4e-33
gb|AAW22926.1| RNA polymerase II second largest subunit, partial...   146   5e-33
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis...   146   6e-33
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su...   146   6e-33
gb|AAY85236.1| RNA polymerase II second largest subunit, partial...   146   6e-33
gb|AAC08960.1| RNA polymerase II second largest subunit [Peperom...   145   8e-33
gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschsch...   145   8e-33
gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi...   145   8e-33
gb|AAY85199.1| RNA polymerase II second largest subunit, partial...   145   8e-33
gb|AAY89339.1| RNA polymerase II second largest subunit [Berberi...   145   8e-33
gb|AAY85208.1| RNA polymerase II second largest subunit, partial...   145   8e-33

>gb|AAC08937.1| RPB140 [Chloranthus spicatus]
          Length = 533

 Score =  149 bits (375), Expect = 9e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 285 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 344

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDET QGQ S
Sbjct: 345 KTTPIAQDET-QGQAS 359


>gb|AAY85196.1| RNA polymerase II second largest subunit, partial [Chimonanthus
           praecox]
          Length = 906

 Score =  147 bits (372), Expect = 2e-33
 Identities = 72/76 (94%), Positives = 74/76 (97%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 711 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 770

Query: 50  KTTPIGQDETQQGQTS 3
           KT+PI QDE+ QGQTS
Sbjct: 771 KTSPIAQDES-QGQTS 785


>gb|AAY85220.1| RNA polymerase II second largest subunit, partial [Berberis
           nervosa]
          Length = 540

 Score =  147 bits (372), Expect = 2e-33
 Identities = 71/76 (93%), Positives = 71/76 (93%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI  DETQ G  S
Sbjct: 360 KTTPIAPDETQGGVAS 375


>gb|AAW22925.1| RNA polymerase II second largest subunit, partial [Asarum caudatum]
          Length = 565

 Score =  147 bits (371), Expect = 3e-33
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 299 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 358

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE+ QGQ S
Sbjct: 359 KTTPIAQDES-QGQAS 373


>gb|AAW22924.1| RNA polymerase II second largest subunit, partial [Drimys winteri]
          Length = 565

 Score =  147 bits (371), Expect = 3e-33
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 299 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 358

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE+ QGQ S
Sbjct: 359 KTTPIAQDES-QGQAS 373


>gb|AAY85203.1| RNA polymerase II second largest subunit, partial [Dicentra
           formosa]
          Length = 873

 Score =  147 bits (371), Expect = 3e-33
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 712 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 771

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE+ QGQ S
Sbjct: 772 KTTPIAQDES-QGQAS 786


>gb|AAY85235.1| RNA polymerase II second largest subunit, partial [Tetracentron
           sinense]
          Length = 951

 Score =  147 bits (371), Expect = 3e-33
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 712 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 771

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE+ QGQ S
Sbjct: 772 KTTPIAQDES-QGQAS 786


>gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
           aralioides]
          Length = 547

 Score =  147 bits (371), Expect = 3e-33
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 299 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 358

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE+ QGQ S
Sbjct: 359 KTTPIAQDES-QGQAS 373


>gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  147 bits (370), Expect = 4e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTL+KEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 703 LFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 762

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE+ QGQ S
Sbjct: 763 KTTPIAQDES-QGQAS 777


>gb|AAS86822.1| RNA polymerase II second largest subunit, partial [Liriodendron
           tulipifera]
          Length = 539

 Score =  147 bits (370), Expect = 4e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTL+KEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 300 LFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 359

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE+ QGQ S
Sbjct: 360 KTTPIAQDES-QGQAS 374


>gb|AAW22926.1| RNA polymerase II second largest subunit, partial [Illicium
           anisatum]
          Length = 539

 Score =  146 bits (369), Expect = 5e-33
 Identities = 72/76 (94%), Positives = 72/76 (94%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 292 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 351

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QDE  QGQ S
Sbjct: 352 KTTPIAQDE--QGQAS 365


>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score =  146 bits (368), Expect = 6e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 303 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 362

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QD++ QGQ S
Sbjct: 363 KTTPISQDDS-QGQAS 377


>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera] gi|147841183|emb|CAN72948.1| hypothetical
            protein VITISV_033708 [Vitis vinifera]
            gi|302143287|emb|CBI21848.3| unnamed protein product
            [Vitis vinifera]
          Length = 1193

 Score =  146 bits (368), Expect = 6e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230  LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
            LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 818  LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 877

Query: 50   KTTPIGQDETQQGQTS 3
            KTTPI QD++ QGQ S
Sbjct: 878  KTTPISQDDS-QGQAS 892


>gb|AAY85236.1| RNA polymerase II second largest subunit, partial [Vitis piasezkii]
          Length = 951

 Score =  146 bits (368), Expect = 6e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 712 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 771

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QD++ QGQ S
Sbjct: 772 KTTPISQDDS-QGQAS 786


>gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score =  145 bits (367), Expect = 8e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 306 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 365

Query: 50  KTTPIGQDETQQGQTS 3
           KT+PI QDE+ QGQ S
Sbjct: 366 KTSPIAQDES-QGQAS 380


>gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score =  145 bits (367), Expect = 8e-33
 Identities = 70/76 (92%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTL+KEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 712 LFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 771

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QD++ QGQ S
Sbjct: 772 KTTPIAQDDS-QGQAS 786


>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  145 bits (367), Expect = 8e-33
 Identities = 71/76 (93%), Positives = 72/76 (94%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 712 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 771

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QD+  QGQ S
Sbjct: 772 KTTPISQDDA-QGQAS 786


>gb|AAY85199.1| RNA polymerase II second largest subunit, partial [Cissus tuberosa]
          Length = 951

 Score =  145 bits (367), Expect = 8e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 712 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 771

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QD++ QGQ S
Sbjct: 772 KTTPISQDDS-QGQPS 786


>gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
          Length = 853

 Score =  145 bits (367), Expect = 8e-33
 Identities = 71/76 (93%), Positives = 72/76 (94%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 692 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 751

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI QD+  QGQ S
Sbjct: 752 KTTPISQDDA-QGQAS 766


>gb|AAY85208.1| RNA polymerase II second largest subunit, partial [Euptelea
           polyandra]
          Length = 874

 Score =  145 bits (367), Expect = 8e-33
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = -3

Query: 230 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 51
           LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG
Sbjct: 712 LFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 771

Query: 50  KTTPIGQDETQQGQTS 3
           KTTPI Q+E+ QGQ S
Sbjct: 772 KTTPIAQEES-QGQAS 786