BLASTX nr result

ID: Cinnamomum25_contig00025096 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00025096
         (328 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009404489.1| PREDICTED: pentatricopeptide repeat-containi...    64   5e-08
ref|XP_010276946.1| PREDICTED: pentatricopeptide repeat-containi...    61   3e-07
ref|XP_010915655.1| PREDICTED: pentatricopeptide repeat-containi...    58   2e-06
ref|XP_008230331.1| PREDICTED: pentatricopeptide repeat-containi...    57   6e-06

>ref|XP_009404489.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic [Musa acuminata subsp. malaccensis]
          Length = 862

 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = -3

Query: 155 SLPKPQFQDPTKHPNFEPLKHRLIRLAESGHLKTALSTLDLMTQQGIQPDL 3
           S+  P  + PTKHP+ EPLKHRLIRLA++G +  A+STLDLM+ +G+  DL
Sbjct: 30  SVTSPPPRIPTKHPSLEPLKHRLIRLADAGRVDDAISTLDLMSDRGVPADL 80


>ref|XP_010276946.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic [Nelumbo nucifera]
          Length = 856

 Score = 60.8 bits (146), Expect = 3e-07
 Identities = 37/75 (49%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
 Frame = -3

Query: 200 TTQNVPAK---------RPKHSKLSLPKPQFQDPTKHPNFEPLKHRLIRLAESGHLKTAL 48
           T   VPAK         RP   K+S       +  KHP FEPLK+RLIRL   G+L  AL
Sbjct: 4   TCLGVPAKIISPPLTSLRPSRDKISSG-----ESLKHPQFEPLKNRLIRLVNGGNLDGAL 58

Query: 47  STLDLMTQQGIQPDL 3
           STL+ MTQ+GIQ DL
Sbjct: 59  STLEFMTQKGIQADL 73


>ref|XP_010915655.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic [Elaeis guineensis]
          Length = 862

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 31/60 (51%), Positives = 39/60 (65%)
 Frame = -3

Query: 182 AKRPKHSKLSLPKPQFQDPTKHPNFEPLKHRLIRLAESGHLKTALSTLDLMTQQGIQPDL 3
           A RPK + ++   PQ     KHP  EPLKHR+IRLA+ G L  ALS LDLM ++G+  DL
Sbjct: 22  ACRPK-TTITTTVPQTPATNKHPALEPLKHRVIRLADRGRLDDALSALDLMDRRGVPADL 80


>ref|XP_008230331.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic [Prunus mume]
          Length = 846

 Score = 56.6 bits (135), Expect = 6e-06
 Identities = 27/55 (49%), Positives = 34/55 (61%)
 Frame = -3

Query: 167 HSKLSLPKPQFQDPTKHPNFEPLKHRLIRLAESGHLKTALSTLDLMTQQGIQPDL 3
           H+   LP P    P K PNF+ L +RLI     GHL+ A++TLDLM Q+G  PDL
Sbjct: 9   HAPAKLPLPPSLRPQKSPNFDSLNNRLISHINVGHLRKAITTLDLMAQRGTHPDL 63


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