BLASTX nr result
ID: Cinnamomum25_contig00015276
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cinnamomum25_contig00015276
(1900 letters)
Database: ./nr
69,698,275 sequences; 24,982,196,650 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAY85196.1| RNA polymerase II second largest subunit, partial... 1186 0.0
gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriode... 1179 0.0
gb|AAY89340.1| RNA polymerase II second largest subunit [Berberi... 1176 0.0
ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II su... 1176 0.0
gb|AAY85223.1| RNA polymerase II second largest subunit, partial... 1176 0.0
gb|AAY85190.1| RNA polymerase II second largest subunit, partial... 1176 0.0
gb|AAY85216.1| RNA polymerase II second largest subunit, partial... 1175 0.0
gb|AAY85208.1| RNA polymerase II second largest subunit, partial... 1175 0.0
gb|AAY85235.1| RNA polymerase II second largest subunit, partial... 1174 0.0
gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanu... 1173 0.0
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 1172 0.0
gb|AAY85236.1| RNA polymerase II second largest subunit, partial... 1172 0.0
gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschsch... 1172 0.0
gb|AAY85203.1| RNA polymerase II second largest subunit, partial... 1169 0.0
gb|KJB68625.1| hypothetical protein B456_010G255400 [Gossypium r... 1165 0.0
ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1165 0.0
ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II su... 1165 0.0
ref|XP_007025631.1| DNA-directed RNA polymerase family protein i... 1164 0.0
ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II su... 1163 0.0
ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II su... 1163 0.0
>gb|AAY85196.1| RNA polymerase II second largest subunit, partial [Chimonanthus
praecox]
Length = 906
Score = 1186 bits (3068), Expect = 0.0
Identities = 592/633 (93%), Positives = 604/633 (95%), Gaps = 1/633 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM ENQNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RAS+KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRP
Sbjct: 144 RASSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAKEILQKEMLPHVG G+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGTGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 264 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKT+TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTVTSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRLLRRRVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYV 462
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ LQQRETQEEGWHDLVAKGFIEYV
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRVLQQRETQEEGWHDLVAKGFIEYV 563
Query: 461 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 282
D SDLV+ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 564 DTEEEETTMISMTISDLVSARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPR 623
Query: 281 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 102
NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 624 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 683
Query: 101 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 716
>gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
Length = 942
Score = 1179 bits (3051), Expect = 0.0
Identities = 590/633 (93%), Positives = 603/633 (95%), Gaps = 1/633 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 76 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 135
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 136 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 195
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRG TVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 196 SLEEAFVIQNQQVALDYIGKRGQTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAY 255
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCV
Sbjct: 256 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV 315
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSHLRR
Sbjct: 316 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRR 375
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 376 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 435
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 436 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIR 495
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYV 462
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKK I++LQQRETQ+EGWHDLVAKGFIEYV
Sbjct: 496 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKHIRSLQQRETQDEGWHDLVAKGFIEYV 555
Query: 461 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 282
D SDLV+ARLNPD+AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 556 DTEEEETTMISMTISDLVSARLNPDEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 615
Query: 281 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 102
NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 616 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 675
Query: 101 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 676 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 708
>gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
Length = 873
Score = 1176 bits (3043), Expect = 0.0
Identities = 589/634 (92%), Positives = 602/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSM E+QNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 144 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 264 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDIQALQQRE+ E+ GWHDLVAKGFIEY
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESHEDGGWHDLVAKGFIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DL++A+LNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 564 VDTEEEETTMISMTINDLISAKLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AI CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AITCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>ref|XP_010242918.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo
nucifera]
Length = 1189
Score = 1176 bits (3041), Expect = 0.0
Identities = 591/634 (93%), Positives = 602/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 186 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 245
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 246 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 305
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 306 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 365
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 366 YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 425
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 426 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 485
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 486 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 545
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 546 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIR 605
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ EE GWHDLVAKGFIEY
Sbjct: 606 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESSEEGGWHDLVAKGFIEY 665
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DLV ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 666 VDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 725
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 726 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 785
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 786 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 819
>gb|AAY85223.1| RNA polymerase II second largest subunit, partial [Nelumbo nucifera]
Length = 865
Score = 1176 bits (3041), Expect = 0.0
Identities = 591/634 (93%), Positives = 602/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 76 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 135
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 136 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 195
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 196 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 255
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 256 YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 315
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 316 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 375
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 376 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 435
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 436 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIR 495
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ EE GWHDLVAKGFIEY
Sbjct: 496 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESSEEGGWHDLVAKGFIEY 555
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DLV ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 556 VDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 615
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 616 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 675
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 676 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 709
>gb|AAY85190.1| RNA polymerase II second largest subunit, partial [Aextoxicon
punctatum]
Length = 873
Score = 1176 bits (3041), Expect = 0.0
Identities = 590/634 (93%), Positives = 601/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 144 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQN QVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 204 SLEEAFVIQNHQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 264 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHW MMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWXMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDIQALQQRE+ EE GWHDLVAKGFIEY
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQQRESHEEGGWHDLVAKGFIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DL+ ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 564 VDTEEEETTMISMTINDLITARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AI+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>gb|AAY85216.1| RNA polymerase II second largest subunit, partial [Hibbertia
scandens]
Length = 873
Score = 1175 bits (3039), Expect = 0.0
Identities = 588/634 (92%), Positives = 603/634 (95%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQY+RATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 144 RTSAKGGSSGQYVRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 264 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTY+STLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYSSTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ E+ GWHDLVAKGFIEY
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLVAKGFIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DLV ARLNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 564 VDTEEEETTMISMTINDLVTARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN+IV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINSIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>gb|AAY85208.1| RNA polymerase II second largest subunit, partial [Euptelea
polyandra]
Length = 874
Score = 1175 bits (3039), Expect = 0.0
Identities = 588/634 (92%), Positives = 603/634 (95%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYV EVRSM E+QNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 144 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 264 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ ++ GWHDLVAKGFIEY
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DL+ AR+NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 564 VDTEEEETTMISMTINDLITARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>gb|AAY85235.1| RNA polymerase II second largest subunit, partial [Tetracentron
sinense]
Length = 951
Score = 1174 bits (3037), Expect = 0.0
Identities = 588/634 (92%), Positives = 602/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS MFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSGMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 144 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCV
Sbjct: 264 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPD VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRE+ EE GWHDLVAKG+IEY
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPEEGGWHDLVAKGYIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DL+ A+LNP++AYS+TYTHCEIHPSLILGVCASIIPFPDHNQ+P
Sbjct: 564 VDTEEEETTMISMTINDLITAKLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQTP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
Length = 923
Score = 1173 bits (3035), Expect = 0.0
Identities = 589/634 (92%), Positives = 602/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 56 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 115
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF DTQMMELLRP
Sbjct: 116 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFLDTQMMELLRP 175
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 176 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 235
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 236 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 295
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 296 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 355
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 356 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 415
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 416 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVNTLRKLRRQVDVNTEVGVIR 475
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DI LKELRLYTDYGRCSRPLFIVEK+RLLIKKKDI+ALQQRET E+ GWHDLVAKG+IEY
Sbjct: 476 DIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGYIEY 535
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DLV ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 536 VDTEEEETTMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 595
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 596 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 655
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 656 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 689
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 1172 bits (3033), Expect = 0.0
Identities = 587/634 (92%), Positives = 603/634 (95%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 190 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 249
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 250 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 309
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 310 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 369
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 370 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 429
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 430 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 489
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 490 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 549
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNPD VDVNTEVGVIR
Sbjct: 550 LEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIR 609
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKK+DI+ALQ RE+ E+ GWHDLV+KGFIEY
Sbjct: 610 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEY 669
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DL++ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 670 VDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 729
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 730 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 789
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 790 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 823
>gb|AAY85236.1| RNA polymerase II second largest subunit, partial [Vitis piasezkii]
Length = 951
Score = 1172 bits (3033), Expect = 0.0
Identities = 587/634 (92%), Positives = 603/634 (95%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 144 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV
Sbjct: 264 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNPD VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKK+DI+ALQ RE+ E+ GWHDLV+KGFIEY
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DL++ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 564 VDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
Length = 951
Score = 1172 bits (3031), Expect = 0.0
Identities = 588/634 (92%), Positives = 601/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDF+DTQMMELLRP
Sbjct: 144 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYA+EILQKEMLPHVGVG+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAREILQKEMLPHVGVGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCV
Sbjct: 264 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 324 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DI LKELRLYTDYGRCSRPLFIVEK+RLLIKKKDIQALQ RE+ EE GWHDLVAKGFIEY
Sbjct: 504 DIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQALQLRESPEEGGWHDLVAKGFIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DLV+AR+NP +AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 564 VDTEEEETTMISMTINDLVSARVNPKEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>gb|AAY85203.1| RNA polymerase II second largest subunit, partial [Dicentra formosa]
Length = 873
Score = 1169 bits (3023), Expect = 0.0
Identities = 584/634 (92%), Positives = 603/634 (95%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPSSMFVRMLS
Sbjct: 84 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLS 143
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 144 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 203
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYA+EILQKEMLPHVG+G+ CETKKAY
Sbjct: 204 SLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAREILQKEMLPHVGIGEYCETKKAY 263
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCV
Sbjct: 264 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV 323
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 324 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 383
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 384 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 443
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQ+TKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 444 LEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPELLVKTLRALRRQVDVNTEVGVIR 503
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKK+DI+ALQ RE+ +E GWHDLVAKG+IEY
Sbjct: 504 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPDEGGWHDLVAKGYIEY 563
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
VD +DLV+ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 564 VDTEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 623
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 624 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 683
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 684 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 717
>gb|KJB68625.1| hypothetical protein B456_010G255400 [Gossypium raimondii]
Length = 1021
Score = 1165 bits (3013), Expect = 0.0
Identities = 581/634 (91%), Positives = 598/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLS
Sbjct: 188 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 247
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 248 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 307
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 308 SLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAY 367
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCV
Sbjct: 368 YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 427
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 428 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 487
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 488 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 547
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNPD VDVNTEVGV+R
Sbjct: 548 LEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVR 607
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRET E+ GWHDLVAKGFIEY
Sbjct: 608 DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLVAKGFIEY 667
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
+D +DLV AR+NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 668 IDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 727
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 728 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 787
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 788 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 821
>ref|XP_010920288.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Elaeis guineensis]
Length = 1187
Score = 1165 bits (3013), Expect = 0.0
Identities = 580/633 (91%), Positives = 597/633 (94%), Gaps = 1/633 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+Q+RP S+MFVRMLS
Sbjct: 185 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMPESQSRPASTMFVRMLS 244
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 245 RTSAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 304
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 305 SLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAY 364
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCV
Sbjct: 365 YFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 424
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 425 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRR 484
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF
Sbjct: 485 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 544
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEW TENFEEISPAVIPQA+KIFVNG WVGIHRNPD +DVNTEVGV+R
Sbjct: 545 LEEWGTENFEEISPAVIPQASKIFVNGSWVGIHRNPDLLVRTLRRLRRQIDVNTEVGVVR 604
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYV 462
DIRLKELRLYTDYGRCSRPLFIVE +RLLIKKKDIQALQQRE+ EEGWHDLVAKGFIEY+
Sbjct: 605 DIRLKELRLYTDYGRCSRPLFIVENQRLLIKKKDIQALQQRESPEEGWHDLVAKGFIEYI 664
Query: 461 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 282
D +DLVNAR NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 665 DTEEEETTMIAMTINDLVNARQNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 724
Query: 281 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 102
NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 725 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 784
Query: 101 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 785 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 817
>ref|XP_012449722.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|823234175|ref|XP_012449723.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB2 [Gossypium
raimondii] gi|728847618|gb|KHG27061.1| DNA-directed RNA
polymerase II subunit RPB2 [Gossypium arboreum]
gi|763801668|gb|KJB68623.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
gi|763801669|gb|KJB68624.1| hypothetical protein
B456_010G255400 [Gossypium raimondii]
Length = 1189
Score = 1165 bits (3013), Expect = 0.0
Identities = 581/634 (91%), Positives = 598/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLS
Sbjct: 188 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 247
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 248 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 307
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 308 SLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAY 367
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCV
Sbjct: 368 YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 427
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 428 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 487
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 488 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 547
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNPD VDVNTEVGV+R
Sbjct: 548 LEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVR 607
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRET E+ GWHDLVAKGFIEY
Sbjct: 608 DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRETPEDGGWHDLVAKGFIEY 667
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
+D +DLV AR+NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 668 IDTEEEETTMISMTINDLVQARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 727
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 728 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 787
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 788 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 821
>ref|XP_007025631.1| DNA-directed RNA polymerase family protein isoform 1 [Theobroma
cacao] gi|508780997|gb|EOY28253.1| DNA-directed RNA
polymerase family protein isoform 1 [Theobroma cacao]
Length = 1189
Score = 1164 bits (3012), Expect = 0.0
Identities = 581/634 (91%), Positives = 598/634 (94%), Gaps = 2/634 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QNRPPS+MFVRMLS
Sbjct: 188 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLS 247
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 248 RTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 307
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVGD CETKKAY
Sbjct: 308 SLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGDFCETKKAY 367
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLLLCA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCV
Sbjct: 368 YFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 427
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 428 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 487
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNS WGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 488 LNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEF 547
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEW TENFEEISPAVIPQATKIFVNGCWVG+HRNPD VDVNTEVGV+R
Sbjct: 548 LEEWGTENFEEISPAVIPQATKIFVNGCWVGVHRNPDMLVTTLRRLRRRVDVNTEVGVVR 607
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEE-GWHDLVAKGFIEY 465
DIRLKELR+YTDYGRCSRPLFIVEK+RLLIKKKDI ALQQRE+ E+ GWHDLVAKGFIEY
Sbjct: 608 DIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEY 667
Query: 464 VDXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 285
+D +DLV AR+NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSP
Sbjct: 668 IDTEEEETTMISMTINDLVQARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 727
Query: 284 RNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 105
RNTYQSAMGKQAMGIYVTNYQ RMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV
Sbjct: 728 RNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV 787
Query: 104 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 788 AIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 821
>ref|XP_006650345.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Oryza
brachyantha]
Length = 1184
Score = 1163 bits (3008), Expect = 0.0
Identities = 579/633 (91%), Positives = 595/633 (93%), Gaps = 1/633 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM ENQNRP SSMFVRMLS
Sbjct: 184 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLS 243
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
RA AKGGSSGQYIRATLPYIR +IPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 244 RAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 303
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRG+TVGVTREKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 304 SLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAY 363
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLL+CA+GRR EDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR+YVQKCV
Sbjct: 364 YFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV 423
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGK+VNLQFAIKAKTITSGLKYSLATGNWGQAN AGTRAGVSQVLNRLTYASTLSHLRR
Sbjct: 424 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRR 483
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 484 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 543
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEW TENFEEISPAVIPQA KIFVNGCWVGIHRNPD +DVNTEVGV+R
Sbjct: 544 LEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVR 603
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYV 462
DIRLKELRLYTDYGRCSRPLFIVE +RLLIKKK I+ALQQRET EEGWHDLVAKGFIEY+
Sbjct: 604 DIRLKELRLYTDYGRCSRPLFIVENQRLLIKKKHIRALQQRETPEEGWHDLVAKGFIEYI 663
Query: 461 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 282
D +DLVNAR NP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 664 DTEEEETTMISMTINDLVNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 723
Query: 281 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 102
NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 724 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 783
Query: 101 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 784 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 816
>ref|XP_006859038.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amborella
trichopoda] gi|548863150|gb|ERN20505.1| hypothetical
protein AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 1163 bits (3008), Expect = 0.0
Identities = 579/633 (91%), Positives = 600/633 (94%), Gaps = 1/633 (0%)
Frame = -3
Query: 1898 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMLENQNRPPSSMFVRMLS 1719
GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSM E+QN+PPSSMFVRMLS
Sbjct: 184 GYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNKPPSSMFVRMLS 243
Query: 1718 RASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 1539
R S+KGGSSGQYIRATLPYIR EIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP
Sbjct: 244 RTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRP 303
Query: 1538 SLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGD-CETKKAY 1362
SLEEAFVIQNQQVALDYIGKRGSTVGVT+EKRIKYAKEILQKEMLPHVGVG+ CETKKAY
Sbjct: 304 SLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAY 363
Query: 1361 YFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCV 1182
YFGYIIHRLL+CA+GRRPEDDRDHYGNKRLDLAGPLLG LFR +FRKLTRDVR+YVQKCV
Sbjct: 364 YFGYIIHRLLVCALGRRPEDDRDHYGNKRLDLAGPLLGSLFRTMFRKLTRDVRSYVQKCV 423
Query: 1181 DNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRR 1002
DNGK+VNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT+ASTLSHLRR
Sbjct: 424 DNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRR 483
Query: 1001 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEF 822
LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAA+PILEF
Sbjct: 484 LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 543
Query: 821 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDXXXXXXXXXXXXVDVNTEVGVIR 642
LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP+ VDVNTEVGVIR
Sbjct: 544 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIR 603
Query: 641 DIRLKELRLYTDYGRCSRPLFIVEKKRLLIKKKDIQALQQRETQEEGWHDLVAKGFIEYV 462
DIRLKELRLYTDYGRCSRPLFIVEK+RLLIKK DI+ALQQRE+ +EGWHDLVAKGFIEYV
Sbjct: 604 DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQRESPDEGWHDLVAKGFIEYV 663
Query: 461 DXXXXXXXXXXXXXSDLVNARLNPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 282
D SDLV+ARLNP++AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR
Sbjct: 664 DTEEEETTMISMTISDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPR 723
Query: 281 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 102
NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA
Sbjct: 724 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 783
Query: 101 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 3
I+CYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY
Sbjct: 784 ISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 816