BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cinnamomum25_contig00012037
         (1872 letters)

Database: ./nr 
           69,698,275 sequences; 24,982,196,650 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-...   638   e-180
ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-...   632   e-178
ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB ...   630   e-177
gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arbor...   624   e-176
ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB ...   620   e-174
ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB ...   617   e-173
ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB ...   616   e-173
ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB ...   615   e-173
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac...   613   e-172
ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB ...   612   e-172
ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-...   611   e-172
gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sin...   608   e-171
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-...   606   e-170
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ...   604   e-170
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr...   602   e-169
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB ...   601   e-169
ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus nota...   599   e-168
ref|XP_011623893.1| PREDICTED: RNA polymerase sigma factor sigB ...   595   e-167
ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB ...   594   e-167
ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB ...   594   e-167

>ref|XP_010278441.1| PREDICTED: RNA polymerase sigma factor sigB-like [Nelumbo nucifera]
          Length = 572

 Score =  638 bits (1646), Expect = e-180
 Identities = 351/566 (62%), Positives = 409/566 (72%), Gaps = 11/566 (1%)
 Frame = -3

Query: 1870 SLHYRPTQH-----HNTQLKTKEPICSRGYCVSSSTTS-----LIDVEKLRLPSIDDHST 1721
            S+H++  QH     +N+QLK ++ +C R  C+ S+TT+     ++D EKLR+PS++ H  
Sbjct: 16   SIHFKTHQHQHHYSNNSQLKARDLLCFRTQCILSTTTATMTTTVVDDEKLRMPSLEAHLI 75

Query: 1720 SVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDA 1541
            SV A R LTY GA+ PP K  F ATLATE  +TG                       KDA
Sbjct: 76   SVPADRPLTYIGAIDPPTKAKFEATLATEPLITGDEALIAAAAVEAVALAKAAVEIAKDA 135

Query: 1540 AVMPTTNTLKILDN-PESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGS 1364
            A+M +TN     D  P    S+ D    E+A+  E E VD + H    E +P E++D   
Sbjct: 136  ALMVSTNPSSKSDKWPPDIPSELDTYWHETAQLNEIEQVDMVHHSLGAESRPKEDSDY-- 193

Query: 1363 SIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSG 1184
                    D  D EL+LL+MQLS+SI  RSG                       K GSS 
Sbjct: 194  -------LDPTDEELKLLQMQLSKSIAVRSGRQTERRARRARAAEKVAANVVAVKSGSSS 246

Query: 1183 RKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGC 1004
            RKKR+++Q+VDYSDPLRYLRGTTST++LLT ++ELE S GIQ             ER G 
Sbjct: 247  RKKRSALQDVDYSDPLRYLRGTTSTSRLLTATEELEFSEGIQDLLKLEKLYEELAERYGG 306

Query: 1003 QPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE 824
            QPT AQWAAAAG+D+KTLRK LN+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE
Sbjct: 307  QPTFAQWAAAAGIDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQE 366

Query: 823  GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAR 644
            GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EAR
Sbjct: 367  GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAR 426

Query: 643  KQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPD 464
            KQLYS+NGR P++EE+AEATGLSMKRL AVLLTPK PRSLDQKIG + NLKPSEV ADPD
Sbjct: 427  KQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSEVIADPD 486

Query: 463  AETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERV 284
            AET E++LMK+FMK+DL+KVLD L+PRE QVIR RFGL+DGRMKTLQEIGEL+GVSRER+
Sbjct: 487  AETTEELLMKKFMKQDLEKVLDSLNPREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERI 546

Query: 283  RQIESCAFRKLKNKKRTKHLEQYLIS 206
            RQIESCAFRKLKNKKRTK+L+QYLIS
Sbjct: 547  RQIESCAFRKLKNKKRTKNLQQYLIS 572


>ref|XP_010251515.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  632 bits (1631), Expect = e-178
 Identities = 341/568 (60%), Positives = 411/568 (72%), Gaps = 14/568 (2%)
 Frame = -3

Query: 1870 SLHYRP--TQHH------NTQLKTKEPICSRGYCVSSSTTS-----LIDVEKLRLPSIDD 1730
            S+H+R    QHH      N   K+++ +  +  CV S+TT+     L+DVEKLR+PS++ 
Sbjct: 16   SIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVLSTTTTAMTTTLVDVEKLRMPSLES 75

Query: 1729 HSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXX 1550
            HS SVA+ R L+Y GA  PP K SF ATLA E+ +TG                       
Sbjct: 76   HSISVASDRPLSYIGATGPPTKASFEATLAMESLITGDEALIAAAAAEAVALAKEAVEVA 135

Query: 1549 KDAAVMPTTNTLKILDN-PESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEEND 1373
            KDAA+M    +    +N P  F+S+  +  +E A+ TET+ V  + H    E +  EE  
Sbjct: 136  KDAALMVNDKSSSESENGPSDFSSESHIFRLEKAQLTETQEVGRIDHSVGLESRQEEEQS 195

Query: 1372 PGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPG 1193
               S KD++  D  D E +LL+MQL +SI  RSG                       K G
Sbjct: 196  VQFSNKDSDGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRARAMEKASTNVLSVKSG 255

Query: 1192 SSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXER 1013
             S RK+RA++Q++DYSDPLRYLRGTTST++LLT ++ELELS GIQ             ER
Sbjct: 256  HSSRKRRAALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLHEELAER 315

Query: 1012 CGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDL 833
            CG QPT AQWAAAAG+D+KTLRK LN+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDL
Sbjct: 316  CGGQPTFAQWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDL 375

Query: 832  VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVK 653
            VQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+
Sbjct: 376  VQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVR 435

Query: 652  EARKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTA 473
            EA+KQLYS+NGR P++EE+AEATGLSMKRL AVLLTPK P SLDQKIG + ++KPSE+ A
Sbjct: 436  EAKKQLYSENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISLDQKIGMNQDMKPSEIIA 495

Query: 472  DPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSR 293
            DPDAETAE++L+KQFMK+DL+KVLD L+PRE QVIR RFG++DGRMKTLQEIGEL+GVSR
Sbjct: 496  DPDAETAEELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSR 555

Query: 292  ERVRQIESCAFRKLKNKKRTKHLEQYLI 209
            ER+RQIESCAFRKLKNK+RTK+L+QY+I
Sbjct: 556  ERIRQIESCAFRKLKNKRRTKNLQQYVI 583


>ref|XP_008240611.1| PREDICTED: RNA polymerase sigma factor sigB [Prunus mume]
          Length = 643

 Score =  630 bits (1624), Expect = e-177
 Identities = 339/551 (61%), Positives = 403/551 (73%), Gaps = 8/551 (1%)
 Frame = -3

Query: 1834 QLKTKEPICSRGYCV--------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGAL 1679
            Q K+++P+C R   +        S+ TT+++DVEKLRLPS++ +S S+AA R  TYTGA 
Sbjct: 93   QAKSRDPLCFRAQSILSTASRSTSTGTTTVLDVEKLRLPSLEVNSDSLAANRPWTYTGAT 152

Query: 1678 APPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDN 1499
             PP++ +FGATLATE  LT                        KD A++ +TN     ++
Sbjct: 153  GPPIEANFGATLATENLLTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSTNHSAKAES 212

Query: 1498 PESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERDNEL 1319
                + K + L  + AK  ET+    LG    +E    E +    +IK++ED +  + E 
Sbjct: 213  SSPVSPKTNALHFKWAKHMETKQPSRLGASMGSETALVENHFIQLAIKESEDVESTNQEF 272

Query: 1318 ELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDP 1139
            ELL+ QLSE ITARS                        K GS+ RKKRAS+Q+VD+SDP
Sbjct: 273  ELLQEQLSEGITARSSRQIERKARRAKAAEKAAASVVSVKSGSTSRKKRASLQDVDHSDP 332

Query: 1138 LRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDR 959
            LRYLR TT T++LLT ++E+ELS GIQ             +RCG QPTIAQWAAAAG+D+
Sbjct: 333  LRYLRATTHTSRLLTANEEIELSEGIQELLKLEKLQEELVQRCGGQPTIAQWAAAAGVDQ 392

Query: 958  KTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 779
            KTLRK +N+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ+GCRGLVRGAEKFDAS
Sbjct: 393  KTLRKRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQQGCRGLVRGAEKFDAS 452

Query: 778  KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEE 599
            KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS NGR PNDEE
Sbjct: 453  KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEE 512

Query: 598  IAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKE 419
            +AEATGLSMKRL AVLLTPK PRSL+QKIG + NLKPSEV ADPDAETAEDMLMK+FMK+
Sbjct: 513  VAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETAEDMLMKKFMKQ 572

Query: 418  DLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKK 239
            DL+KVLD L+ RE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKK
Sbjct: 573  DLEKVLDSLNAREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK 632

Query: 238  RTKHLEQYLIS 206
            RTKHL+QY++S
Sbjct: 633  RTKHLQQYVVS 643


>gb|KHG18437.1| RNA polymerase sigma factor rpoD [Gossypium arboreum]
          Length = 578

 Score =  624 bits (1610), Expect = e-176
 Identities = 335/555 (60%), Positives = 396/555 (71%), Gaps = 7/555 (1%)
 Frame = -3

Query: 1846 HHNTQLKTKEPICSRGYCV-------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYT 1688
            HH+   K KE IC R  CV       S++TT+++DVEKLRLPS + HS SV   R  TYT
Sbjct: 22   HHSHHSKHKESICFRSQCVLSTTSSTSTATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYT 81

Query: 1687 GALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKI 1508
            GA  PP + SFGATLATE  LT                        KDAA+M   ++   
Sbjct: 82   GATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVALARAAAKVAKDAAIMVKNHSSAK 141

Query: 1507 LDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERD 1328
             +     +S  D L  +   FTE E    +G + + E +  E++   +S K++++ +  +
Sbjct: 142  TEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDELEMEEDDFEQNSTKESDELEPTN 201

Query: 1327 NELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDY 1148
             EL+LL  QLS SI  RS                        K GS+ RK+R ++Q++DY
Sbjct: 202  EELKLLEEQLSRSIAVRSNRQPERKAKRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDY 261

Query: 1147 SDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAG 968
            SDPLRYLRGTT+T+KLLT ++ELELS GIQ             ERCG  PT AQWAAAA 
Sbjct: 262  SDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEVLHEELAERCGRPPTFAQWAAAAE 321

Query: 967  LDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 788
            +DRKTLR+ LN+G  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL+RGAEKF
Sbjct: 322  VDRKTLRERLNYGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKF 381

Query: 787  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPN 608
            DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGR P+
Sbjct: 382  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPD 441

Query: 607  DEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQF 428
            + E+AEATGLSMKRL AVLL PK PRSLDQKIG + NLKPSEV ADP+A++AED+L+KQF
Sbjct: 442  NIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQNLKPSEVIADPEADSAEDILLKQF 501

Query: 427  MKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLK 248
            MK+DL+KVLD LSPRE QVIR RFG++DGRMKTLQEIGE +GVSRER+RQIE CAFRKLK
Sbjct: 502  MKKDLEKVLDSLSPRERQVIRWRFGMEDGRMKTLQEIGESMGVSRERIRQIELCAFRKLK 561

Query: 247  NKKRTKHLEQYLISY 203
            NK+RTKHL+QYL+SY
Sbjct: 562  NKRRTKHLQQYLLSY 576


>ref|XP_010661180.1| PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
            gi|296090195|emb|CBI40014.3| unnamed protein product
            [Vitis vinifera]
          Length = 575

 Score =  620 bits (1598), Expect = e-174
 Identities = 337/550 (61%), Positives = 393/550 (71%), Gaps = 9/550 (1%)
 Frame = -3

Query: 1828 KTKEPICSRGYC--------VSSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAP 1673
            K +E I  R  C        +S+STT+++D+EKLRLPS++ HS SVAA R  TY G + P
Sbjct: 26   KNREAIYFRVQCALSTTSPPLSTSTTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGP 85

Query: 1672 PLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAA-VMPTTNTLKILDNP 1496
            P + +F ATLA ET LT                        KDAA ++   N+ K    P
Sbjct: 86   PTEANFEATLARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSETKP 145

Query: 1495 ESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERDNELE 1316
             SF S  D       +FTETE +  LG     E    + N      +D++D +    ELE
Sbjct: 146  ASFLSGDDTSQFRRIQFTETERIGILGDSVGAETGMVDYNSLQDVTEDSDDLEPTLEELE 205

Query: 1315 LLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPL 1136
            LL  + S+SI  RS                        + GS+ R+KR S+QEVDYSDPL
Sbjct: 206  LLEAEFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPL 265

Query: 1135 RYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRK 956
            RYLRGTTST++LLT ++ELELS GIQ             ER G +PT AQWAAAAG+D+K
Sbjct: 266  RYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQK 325

Query: 955  TLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 776
            TLR+  N+GIRCKDKMIKSNIRLVISIAKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASK
Sbjct: 326  TLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASK 385

Query: 775  GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEI 596
            GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGR PN+EE+
Sbjct: 386  GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEV 445

Query: 595  AEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKED 416
            AEATGLSMKRL AVLLTPK PRSLDQKIG + NLKPSEV ADPDAETAE++L+KQFM+ED
Sbjct: 446  AEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMRED 505

Query: 415  LDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKR 236
            L+KVL+ L+PRE QVIR R+GL+DGR KTLQEIGEL+GVSRER+RQIESCAFRKLKNK+R
Sbjct: 506  LEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRR 565

Query: 235  TKHLEQYLIS 206
            TKHL+QYL+S
Sbjct: 566  TKHLQQYLVS 575


>ref|XP_012070322.1| PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
            gi|802585247|ref|XP_012070323.1| PREDICTED: RNA
            polymerase sigma factor sigB [Jatropha curcas]
            gi|643732514|gb|KDP39610.1| hypothetical protein
            JCGZ_02630 [Jatropha curcas]
          Length = 577

 Score =  617 bits (1591), Expect = e-173
 Identities = 335/558 (60%), Positives = 395/558 (70%), Gaps = 5/558 (0%)
 Frame = -3

Query: 1864 HYRPTQHHNTQLKTKEPICSRGYCVSSST-----TSLIDVEKLRLPSIDDHSTSVAAVRS 1700
            HY    +     K++EP+C R  C+ S+T     T+++D+EKLRLPS + H  S+ A   
Sbjct: 22   HYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLDLEKLRLPSFEAHPDSLVANSP 81

Query: 1699 LTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTN 1520
             TY G++ PP K +FG+TLATET +TG                       KDAA++  + 
Sbjct: 82   WTYVGSIGPP-KETFGSTLATETLITGDDAVIAAAAAEAVALARAAAKVAKDAAILVKSF 140

Query: 1519 TLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDS 1340
                 ++     S  D+      +FTET+    +G   T E    EE+      K+++  
Sbjct: 141  PSSEAESKLEIPSIADVSS-RWPQFTETDRARIIGDSVTAETGSREEHPMQHPTKESDHL 199

Query: 1339 DERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQ 1160
            +    ELELL+ QLSE I  RS                        K GS+ +KKR  +Q
Sbjct: 200  EPTHEELELLQKQLSEGIAVRSRRQTERKERRTRAAEKAAANVMSWKSGSTSKKKRGPLQ 259

Query: 1159 EVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWA 980
            EVDYSDPLRYLRGTTST+KLLT ++ELELS GIQ             ERCG QPT  QWA
Sbjct: 260  EVDYSDPLRYLRGTTSTSKLLTATEELELSEGIQDLLKLERLHEELAERCGGQPTFQQWA 319

Query: 979  AAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 800
            AAAG+D+KTLR  LN+GI CKD+MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG
Sbjct: 320  AAAGVDQKTLRTRLNYGISCKDRMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 379

Query: 799  AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNG 620
            AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NG
Sbjct: 380  AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 439

Query: 619  RLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDML 440
            R P+DEE+AEATGLSMKRL AVLLTPK PRSLDQKIG +++LKPSE+ ADPDAETAED+L
Sbjct: 440  RYPDDEEVAEATGLSMKRLSAVLLTPKAPRSLDQKIGINMDLKPSEIIADPDAETAEDLL 499

Query: 439  MKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAF 260
            MKQFMK+DL+KVLD LSPRENQVIR RFGL+DGR+KTLQEIGE++GVSRER+RQIES AF
Sbjct: 500  MKQFMKQDLEKVLDSLSPRENQVIRWRFGLEDGRIKTLQEIGEIMGVSRERIRQIESSAF 559

Query: 259  RKLKNKKRTKHLEQYLIS 206
            RKLK KKRTK L+QYL++
Sbjct: 560  RKLKKKKRTKQLKQYLVA 577


>ref|XP_009377635.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Pyrus x
            bretschneideri]
          Length = 643

 Score =  616 bits (1588), Expect = e-173
 Identities = 334/559 (59%), Positives = 407/559 (72%), Gaps = 11/559 (1%)
 Frame = -3

Query: 1849 QHHNTQLKTKEPICSRG--------YCVSSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLT 1694
            +H + Q KT++P+C R         +  S++TT+++D+E+LRLPS++ +S S+A+ R  T
Sbjct: 86   KHSSFQAKTRDPLCFRAQYILSTTSHSTSTATTTVLDLERLRLPSLEVNSDSLASSRPWT 145

Query: 1693 YTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTL 1514
            YTGA+ P  + +FGATLATET LT                        KD A++ +++T 
Sbjct: 146  YTGAIGPLTEANFGATLATETLLTSEEAVIEAAAAEAVTLAKAALKVAKDVAMLVSSSTN 205

Query: 1513 KILDNPES---FTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAED 1343
                 PES    + +   L    A+  ETE V  +G     E    E++   S+IK+ E+
Sbjct: 206  HSA-KPESSSPVSPETKALHFNWAQHMETEQVSRVGASMGAETAFVEDHFIQSAIKELEE 264

Query: 1342 SDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASI 1163
             ++   E ELL+ QLS+ ITA+S                        K GS+ RKKR+S+
Sbjct: 265  VEQTYEEFELLQEQLSKGITAKSSRQTERKARRAKAAEKAAASVVSVKSGSATRKKRSSV 324

Query: 1162 QEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQW 983
            QE+D+SDPLRYLR TT T++LLT ++E+E S GIQ             +RCG QPTIAQW
Sbjct: 325  QEIDHSDPLRYLRSTTHTSRLLTANEEIEFSEGIQELLKLEKLHEELAQRCGGQPTIAQW 384

Query: 982  AAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 803
            AAAAG+D+KTLRK +N+GI CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR
Sbjct: 385  AAAAGVDQKTLRKRVNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 444

Query: 802  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKN 623
            GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS N
Sbjct: 445  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSLN 504

Query: 622  GRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDM 443
            GR PNDEE+AEATGLSMKRL AVLLTPK PRSL+QKIG + NLKPSEV +DPDAETAED+
Sbjct: 505  GRHPNDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEDL 564

Query: 442  LMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCA 263
            LMK+FMK+DL+KVLD L+ RE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCA
Sbjct: 565  LMKKFMKQDLEKVLDSLNTREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 624

Query: 262  FRKLKNKKRTKHLEQYLIS 206
            FRKLKNKKRTKHL+QY++S
Sbjct: 625  FRKLKNKKRTKHLQQYVVS 643


>ref|XP_012434812.1| PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            gi|763778947|gb|KJB46070.1| hypothetical protein
            B456_007G347300 [Gossypium raimondii]
          Length = 578

 Score =  615 bits (1587), Expect = e-173
 Identities = 332/555 (59%), Positives = 393/555 (70%), Gaps = 7/555 (1%)
 Frame = -3

Query: 1846 HHNTQLKTKEPICSRGYCV-------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYT 1688
            HH+   K KE IC R  CV       S +TT+++DVEKLRLPS + HS SV   R  TYT
Sbjct: 22   HHSHHSKHKESICFRSQCVLSTTSSTSMATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYT 81

Query: 1687 GALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKI 1508
            GA  PP + SFGATLATE  LT                        KDAA+M   +    
Sbjct: 82   GATGPPSEASFGATLATENLLTSDEAVIAAAAAEAVALARAAAKVAKDAAIMVKNHGSAK 141

Query: 1507 LDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERD 1328
             +     +S  D L  +   FTE E    +G + + E +  E++   +S K++++ +  +
Sbjct: 142  TEMKSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDELELEEDHLEQNSTKESDELEPTN 201

Query: 1327 NELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDY 1148
             EL+LL  QLS SI  RS                        K GS+ RK+R ++Q++DY
Sbjct: 202  EELKLLEEQLSRSIAVRSHRQTERKAKRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDY 261

Query: 1147 SDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAG 968
            SDPLRYLRGTT+T+KLLT ++ELELS GIQ             ERCG  PT AQWAAAA 
Sbjct: 262  SDPLRYLRGTTNTSKLLTANEELELSEGIQDLLKLEGLHEELAERCGRPPTFAQWAAAAE 321

Query: 967  LDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 788
            +DRKTLR+ LN+G  C DKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL+RGAEKF
Sbjct: 322  VDRKTLRERLNYGTICMDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKF 381

Query: 787  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPN 608
            DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL+S+NGR P+
Sbjct: 382  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGRQPD 441

Query: 607  DEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQF 428
            + E+AEATGLSMKRL AVLL PK PRSLDQKIG + NLKPSEV ADP+A++AED+L+KQF
Sbjct: 442  NIEVAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQNLKPSEVIADPEADSAEDILLKQF 501

Query: 427  MKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLK 248
            MK+DL+KVLD LSPRE QVIR RFG++DGR+KTLQEIGE +GVSRER+RQIE CAFRKLK
Sbjct: 502  MKKDLEKVLDSLSPRERQVIRWRFGMEDGRVKTLQEIGESMGVSRERIRQIELCAFRKLK 561

Query: 247  NKKRTKHLEQYLISY 203
            NK+RTKHL+QYL+SY
Sbjct: 562  NKRRTKHLQQYLLSY 576


>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
            gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
            [Theobroma cacao]
          Length = 623

 Score =  613 bits (1580), Expect = e-172
 Identities = 338/558 (60%), Positives = 389/558 (69%), Gaps = 16/558 (2%)
 Frame = -3

Query: 1828 KTKEPICSRGYCVSSST--------TSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAP 1673
            K KE IC R  CV S+T        T+++DVEKLRLPS + H  SVA  R  TY GA  P
Sbjct: 64   KHKEHICFRTQCVLSTTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGATGP 123

Query: 1672 PLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPE 1493
            P + S GATLAT+  LT                        KDAA+M         +   
Sbjct: 124  PSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTEMKS 183

Query: 1492 SFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERDNELEL 1313
              +   D    + A FTE E    +G   T E +  E++   +S  ++++ +  + ELE 
Sbjct: 184  GVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEELEH 243

Query: 1312 LRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLR 1133
            L  QLS SI  RS                        K GS+ RK+R ++Q+VDYSDPLR
Sbjct: 244  LEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSDPLR 303

Query: 1132 YLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKT 953
            YLRGTTST++LLT ++ELELS GIQ             ERCG QPT AQWAAAAG+D+KT
Sbjct: 304  YLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVDQKT 363

Query: 952  LRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 773
            LR  LN+G+ CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG
Sbjct: 364  LRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 423

Query: 772  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIA 593
            FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS+NGR P++EE+A
Sbjct: 424  FKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEVA 483

Query: 592  EATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPS--------EVTADPDAETAEDMLM 437
            EATGLSMKRL AVLLTPK PRSLDQKIG + NLKPS        EV ADP+AETAEDML+
Sbjct: 484  EATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETAEDMLI 543

Query: 436  KQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFR 257
            KQFM++DL+KVLD LS RE QVIR RFG++DGRMKTLQEIGEL+GVSRER+RQIESCAFR
Sbjct: 544  KQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFR 603

Query: 256  KLKNKKRTKHLEQYLISY 203
            KLKNKKRTKHL+QYL+SY
Sbjct: 604  KLKNKKRTKHLQQYLLSY 621


>ref|XP_008392513.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Malus
            domestica]
          Length = 638

 Score =  612 bits (1579), Expect = e-172
 Identities = 332/551 (60%), Positives = 402/551 (72%), Gaps = 8/551 (1%)
 Frame = -3

Query: 1834 QLKTKEPICSRGYCV--------SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGAL 1679
            Q KT++P+C R   +        S++TT+++D+EKLRLPS++ +S S+A+ R  TYTGA+
Sbjct: 89   QAKTRDPLCFRAQYILSTTPRSTSTATTTVLDMEKLRLPSLEFNSDSLASSRPWTYTGAI 148

Query: 1678 APPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDN 1499
             PP + +FG+TLATET LT                        KD A++ +T      + 
Sbjct: 149  DPPTEANFGSTLATETLLTSEEAVIAAAAAEAVTLAKAALKVAKDVAMLVSTIHSAKPEI 208

Query: 1498 PESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERDNEL 1319
                + + + L    A+  ETE V  +G     E    E++    + K++E+ +  + E 
Sbjct: 209  SSPVSPETNALHFNWAQHIETEQV-RVGASMGAETAFLEDHFIQYAEKESEEVERTNEEF 267

Query: 1318 ELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDP 1139
            ELL+ QLS+ ITA+S                        K GS+ RKKR+S+QE+D+SDP
Sbjct: 268  ELLQEQLSKGITAKSSRQTERKARRSKAAEKAAASVVSVKSGSTTRKKRSSVQEIDHSDP 327

Query: 1138 LRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDR 959
            LRYLR TT T++LLT ++E+ELSAGIQ             +RCG QPTIAQWAAAAG+D+
Sbjct: 328  LRYLRSTTHTSRLLTANEEIELSAGIQELLKLEKLQEELTQRCGRQPTIAQWAAAAGVDQ 387

Query: 958  KTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 779
            KTLRK +N GI CKDKMIKSNIRLVISIAKNYQG+GMNLQDLVQ+GCRGLVRGAEKFDAS
Sbjct: 388  KTLRKRVNCGILCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQQGCRGLVRGAEKFDAS 447

Query: 778  KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEE 599
            KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA+KQLYS NGR PNDEE
Sbjct: 448  KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSLNGRHPNDEE 507

Query: 598  IAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKE 419
            +AEATGLSMKRL AVLLTPK PRSLDQKIG +LN KPSEV +DPDAETAED+LMK+FMK+
Sbjct: 508  VAEATGLSMKRLSAVLLTPKAPRSLDQKIGINLNFKPSEVISDPDAETAEDLLMKKFMKQ 567

Query: 418  DLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKK 239
            DL+KVLD L+PRE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKK
Sbjct: 568  DLEKVLDSLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK 627

Query: 238  RTKHLEQYLIS 206
            RTKHL+QY +S
Sbjct: 628  RTKHLQQYAVS 638


>ref|XP_008805674.1| PREDICTED: RNA polymerase sigma factor sigB-like [Phoenix
            dactylifera]
          Length = 566

 Score =  611 bits (1576), Expect = e-172
 Identities = 329/554 (59%), Positives = 397/554 (71%), Gaps = 1/554 (0%)
 Frame = -3

Query: 1864 HYRPTQHH-NTQLKTKEPICSRGYCVSSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYT 1688
            H+RP  HH +   K ++ +C R  CVS+ T ++ID++  R+PS++ HSTS+ A R LTY 
Sbjct: 18   HFRPLSHHPSLNSKARDSVCFRSPCVSTLTAAVIDIQ--RIPSLEAHSTSLDATRPLTYV 75

Query: 1687 GALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKI 1508
            GA+ PP+KTS  ATLATET LTG                       KDAA +   +    
Sbjct: 76   GAVGPPMKTSIEATLATETLLTGEEAVIAAAAAEAVALARAAVEVAKDAAQIIGNDPSVK 135

Query: 1507 LDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERD 1328
            L+  E F+S+ D   +E  + TE E + T  +   T+ +P E  DP       + S+   
Sbjct: 136  LEKSEDFSSEADAFRLERVRLTEMELIRTTNNSTPTDTEPHEAKDPSQG---TDVSNLTH 192

Query: 1327 NELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDY 1148
             ELE  +MQ  ESI  RSG                       K GS+ +KKR++ QEVDY
Sbjct: 193  KELESQQMQYPESIAVRSGRQTDRKARRTRAAEKAAVSVIPVKSGSTSKKKRSTFQEVDY 252

Query: 1147 SDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAG 968
            SDPLRYLRGTTST+KLLT ++ELELS  IQ             ER G QPT AQWAAAAG
Sbjct: 253  SDPLRYLRGTTSTSKLLTAAEELELSEAIQDMLKLERLQQELAERHGGQPTFAQWAAAAG 312

Query: 967  LDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 788
            +D++TLRK LN+G  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKF
Sbjct: 313  VDQRTLRKRLNYGRFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKF 372

Query: 787  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPN 608
            DASKGFKFSTYAHWWIKQAVR+SLS+QSRTIRLPFHMVEATYRV+EA+KQLYS+NGR P+
Sbjct: 373  DASKGFKFSTYAHWWIKQAVRRSLSEQSRTIRLPFHMVEATYRVREAKKQLYSENGRYPD 432

Query: 607  DEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQF 428
             +E+AEATGLSMKRL AV+LTPK PRSLDQKIG + +LKPSEV ADP+AET+E++L+KQF
Sbjct: 433  YQEVAEATGLSMKRLNAVMLTPKAPRSLDQKIGINQSLKPSEVIADPEAETSEEILIKQF 492

Query: 427  MKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLK 248
             K+DL+KVLD L+PRE QV+R RFGL+DG  KTLQEIGEL+GVSRER+RQIES AFRKLK
Sbjct: 493  RKQDLNKVLDTLNPREKQVVRWRFGLEDGMTKTLQEIGELMGVSRERIRQIESSAFRKLK 552

Query: 247  NKKRTKHLEQYLIS 206
            NKKRT+HL+QY+IS
Sbjct: 553  NKKRTRHLQQYVIS 566


>gb|KDO49412.1| hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 605

 Score =  608 bits (1569), Expect = e-171
 Identities = 337/567 (59%), Positives = 398/567 (70%), Gaps = 12/567 (2%)
 Frame = -3

Query: 1870 SLHYRPT---QHHNTQ-LKTKEPICSRGYCVSSST--------TSLIDVEKLRLPSIDDH 1727
            S+H+R     QHH++   K+KEPIC R +CV S+T        T+++DVEKLRLPS++ H
Sbjct: 39   SIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTVLDVEKLRLPSLEAH 98

Query: 1726 STSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXK 1547
            S +VAA R  TY GA+ P  + + G +LATET LT                        K
Sbjct: 99   SNAVAANRQWTYFGAVGPSTEENLGTSLATET-LTSDEAVIAAASAEAVALARAAVKVAK 157

Query: 1546 DAAVMPTTNTLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPG 1367
            DAA+M   +      +  + +S  D      A+ TE E    +G     E  P EE    
Sbjct: 158  DAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQ 217

Query: 1366 SSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSS 1187
              +  + D +    EL+LL  Q+S+SI  RS                        K GS+
Sbjct: 218  QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277

Query: 1186 GRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCG 1007
             R+KR S+QEVDYSDPLRYLR TTS+++LLT ++E++LSAGIQ             ERCG
Sbjct: 278  SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337

Query: 1006 CQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 827
              PT AQWAAAAG+D++ LR+ LN+GI CKDKMI SNIRLVISIAKNYQGAGMNLQDLVQ
Sbjct: 338  GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397

Query: 826  EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 647
            EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA
Sbjct: 398  EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 457

Query: 646  RKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADP 467
            RKQLYS+NGR PN+EE+AEATGLSMKRL AVLL+PK PRSLDQKIG + NLKPSEV ADP
Sbjct: 458  RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADP 517

Query: 466  DAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRER 287
            +AETAED+L+K+FMKEDL+KVLD L+PRE QV+R RFGL+DGRMKTLQEIGEL+GVSRER
Sbjct: 518  EAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRER 577

Query: 286  VRQIESCAFRKLKNKKRTKHLEQYLIS 206
            +RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 578  IRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  606 bits (1563), Expect = e-170
 Identities = 336/567 (59%), Positives = 396/567 (69%), Gaps = 12/567 (2%)
 Frame = -3

Query: 1870 SLHYRPT---QHHNTQ-LKTKEPICSRGYCVSSST--------TSLIDVEKLRLPSIDDH 1727
            S+H+R     QHH++   K+KEPIC R +CV S+T        T+++DVEKLRLPS++ H
Sbjct: 39   SIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTVLDVEKLRLPSLEAH 98

Query: 1726 STSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXK 1547
            S +VAA R  TY GA+ P  + + G +LATET LT                        K
Sbjct: 99   SNAVAANRQWTYFGAVGPSTEENLGTSLATET-LTSDEAVIAAASAEAVALARAAVKVAK 157

Query: 1546 DAAVMPTTNTLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPG 1367
            DAA+M   +      +  + +   D      A+ TE E    +G     E  P EE    
Sbjct: 158  DAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQ 217

Query: 1366 SSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSS 1187
              +  + D +    EL+LL  Q+S+SI  RS                        K GS+
Sbjct: 218  QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277

Query: 1186 GRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCG 1007
             R+KR S+QEVDYSDPLRYLR TTS+++LLT ++E++LSAGIQ             ERCG
Sbjct: 278  SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337

Query: 1006 CQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 827
              PT AQWAAAAG+D++ LR+ LN+GI CKDKMI SNIRLVISIAKNYQGAGMNLQDLVQ
Sbjct: 338  GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397

Query: 826  EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 647
            EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA
Sbjct: 398  EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 457

Query: 646  RKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADP 467
            RKQLYS+NGR PN+EE+AEATGLSMKRL AVLLTPK PRSLDQK G + NLKPSEV ADP
Sbjct: 458  RKQLYSENGRHPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKFGINQNLKPSEVIADP 517

Query: 466  DAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRER 287
            +AETAED+L+K+FMKEDL+KVLD L+PRE QV+R RFGL+DGRMKTLQEIGEL+GVSRER
Sbjct: 518  EAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRER 577

Query: 286  VRQIESCAFRKLKNKKRTKHLEQYLIS 206
            +RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 578  IRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
            gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
            rpoD1, putative [Ricinus communis]
          Length = 569

 Score =  604 bits (1558), Expect = e-170
 Identities = 337/568 (59%), Positives = 399/568 (70%), Gaps = 13/568 (2%)
 Frame = -3

Query: 1870 SLHYRPTQHHNTQL----KTKEPICSRGYCVSSST-----TSLIDVEKLRLPSIDDHSTS 1718
            S+H+R    H + +    K++EPI  R  C+ S+T     T+++D+EKLRLPS +  S S
Sbjct: 17   SIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLDLEKLRLPSFEAPSDS 76

Query: 1717 VAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAA 1538
            +A     TY          +FG+TLATET +T                        KDAA
Sbjct: 77   IAPNSPWTYA---------TFGSTLATETLITSDEAVIAAAAAEAVALARAAVKVAKDAA 127

Query: 1537 VM----PTTNTLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDP 1370
            ++    P+  T   L +P +  +          +FTETE    +G    TE  P EE+  
Sbjct: 128  LLVKNFPSAETESKLTSPSTIDAS------RWPQFTETERARIIGDSVATETGPREESSM 181

Query: 1369 GSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGS 1190
             SSIK+++  +    ELELL+ QLSE I  RS                        KPGS
Sbjct: 182  QSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASSVVSVKPGS 241

Query: 1189 SGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERC 1010
            + +KKR S+QEVDYSDPLRYLRGTTST++LLT S+ELELSA IQ             ER 
Sbjct: 242  TSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAERY 301

Query: 1009 GCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 830
            G QPT AQWAAAAG+D++TLRK +NHG  CKDKMIKSNIRLVISIAKNYQGAGMNLQDLV
Sbjct: 302  GGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLV 361

Query: 829  QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 650
            QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE
Sbjct: 362  QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKE 421

Query: 649  ARKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTAD 470
            ARKQLYS+NGR P+DEE+AEA GLSMKRL AVLLTPK PRSLDQKIG +++LKPSEV AD
Sbjct: 422  ARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIAD 481

Query: 469  PDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRE 290
            P+AETAE++LMKQFMK+DL+KVL+ L+PRE QV+R RFGL+DGRMKTLQEIGE++GVSRE
Sbjct: 482  PEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRE 541

Query: 289  RVRQIESCAFRKLKNKKRTKHLEQYLIS 206
            R+RQIES AFRKLKNKKRTK L+QYL++
Sbjct: 542  RIRQIESSAFRKLKNKKRTKQLKQYLLA 569


>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
            gi|557539534|gb|ESR50578.1| hypothetical protein
            CICLE_v10030998mg [Citrus clementina]
          Length = 605

 Score =  602 bits (1553), Expect = e-169
 Identities = 334/567 (58%), Positives = 395/567 (69%), Gaps = 12/567 (2%)
 Frame = -3

Query: 1870 SLHYRPT---QHHNTQ-LKTKEPICSRGYCVSSST--------TSLIDVEKLRLPSIDDH 1727
            S+H+R     QHH++   K+KEPIC R +CV S+T        T+++DVEKLRLPS++ H
Sbjct: 39   SIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTVLDVEKLRLPSLEAH 98

Query: 1726 STSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXK 1547
            S +VAA R  TY GA+ P  + + G +LATET LT                        K
Sbjct: 99   SNAVAANRQWTYFGAVGPSTEENLGTSLATET-LTSDEAVIAAASAEAVALARAAVKVAK 157

Query: 1546 DAAVMPTTNTLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPG 1367
            DAA+M   +      +  + +   D      A+ TE E    +G     E  P EE    
Sbjct: 158  DAALMVNHHNSAKPKSKPAISLSADTSTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQ 217

Query: 1366 SSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSS 1187
              +  + D +    EL+LL  Q+S+SI  RS                        K GS+
Sbjct: 218  QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277

Query: 1186 GRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCG 1007
             R+KR S+QEVDYSDPLRYLR TTS+++LLT ++E++LSAGIQ             ERCG
Sbjct: 278  TRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337

Query: 1006 CQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQ 827
              PT AQWAAAAG+D++ LR+ LN+GI CKDKMI SNIRLVISIAKNYQGAGMNLQDLVQ
Sbjct: 338  GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397

Query: 826  EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 647
            EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA
Sbjct: 398  EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEA 457

Query: 646  RKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADP 467
            RKQLYS+NGR PN+EE+A+ATGLSMKRL AVLL PK PRSLDQK G + NLKPSEV ADP
Sbjct: 458  RKQLYSENGRHPNNEEVAKATGLSMKRLHAVLLAPKAPRSLDQKFGINQNLKPSEVIADP 517

Query: 466  DAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRER 287
            +AETAED+L+K+FMKEDL+KVLD L+PRE QV+R RFGL+DGRMKTLQEIGEL+GVSRER
Sbjct: 518  EAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRER 577

Query: 286  VRQIESCAFRKLKNKKRTKHLEQYLIS 206
            +RQIES AFRKLKNKKRTKHL QY I+
Sbjct: 578  IRQIESSAFRKLKNKKRTKHLMQYAIT 604


>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB [Fragaria vesca subsp.
            vesca]
          Length = 616

 Score =  601 bits (1549), Expect = e-169
 Identities = 321/534 (60%), Positives = 384/534 (71%)
 Frame = -3

Query: 1807 SRGYCVSSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETF 1628
            S  +  S+ T +L+D+E+  LPS+  +S S+   R  TYTGA+ PP + ++GA LATET 
Sbjct: 83   STSHSTSTPTATLLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETL 142

Query: 1627 LTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIESAK 1448
            LT                        KD A++ + N    ++N    +       I  A+
Sbjct: 143  LTSEEAVIAAAAAEAVTLAKAALKVAKDVALLVSNNHYAKVENSSPVSCGTSAFHINWAQ 202

Query: 1447 FTETEHVDTLGHFATTEFQPGEENDPGSSIKDAEDSDERDNELELLRMQLSESITARSGX 1268
              ETE    +G    +E    E++    +I ++E+ +  + E ELL+ QLS  I ARS  
Sbjct: 203  HLETEPTLRIGDSMASETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSR 262

Query: 1267 XXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYS 1088
                                  K GS+ RKKRAS+Q+VD+SDPLRYLR TT T++LLT +
Sbjct: 263  QTERKARRTRAAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTAN 322

Query: 1087 QELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKM 908
            +E+ELS GIQ             +RCG QPT AQWAAAAG+D+KTLRK +N+GI CKDKM
Sbjct: 323  EEIELSEGIQELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKM 382

Query: 907  IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 728
            IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV
Sbjct: 383  IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 442

Query: 727  RKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLL 548
            RKSLSDQSRTIRLPFHMVEATYRV+EA+KQLYS NGR PNDEE+AEATGLSMKRL AVLL
Sbjct: 443  RKSLSDQSRTIRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLL 502

Query: 547  TPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVI 368
            TPK PRSL+QKIG + NLKPS+V ADPDAETAED+LMK+FMK+DL+KVLD L+PRE QVI
Sbjct: 503  TPKAPRSLEQKIGINQNLKPSDVIADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVI 562

Query: 367  RSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 206
            R RFG++DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKKRTKHL+QY++S
Sbjct: 563  RWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLS 616


>ref|XP_010097670.1| RNA polymerase sigma factor rpoD [Morus notabilis]
            gi|587881690|gb|EXB70625.1| RNA polymerase sigma factor
            rpoD [Morus notabilis]
          Length = 574

 Score =  599 bits (1545), Expect = e-168
 Identities = 333/561 (59%), Positives = 386/561 (68%), Gaps = 8/561 (1%)
 Frame = -3

Query: 1864 HYRPTQHHNTQLKTKEPICSRGYCVSSST--------TSLIDVEKLRLPSIDDHSTSVAA 1709
            H  PT   N+ L     I S   CV S+T        T ++ VEKLR PS+D +S SV +
Sbjct: 24   HSLPTP--NSHLPKARDINSLAQCVLSTTSPSTSVGATYVLSVEKLRFPSLDANSESVTS 81

Query: 1708 VRSLTYTGALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMP 1529
             R  TYTGA  PP++ +F ATLATET LT                        KDAA   
Sbjct: 82   NRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDAA--- 138

Query: 1528 TTNTLKILDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDA 1349
                  +L  P +      L+  E+      +    +      E    E++ P  + K++
Sbjct: 139  ------LLVRPSTRAESISLVSSEARNIKTAQAASRVRDSLRAEMALIEDHPPKDAAKES 192

Query: 1348 EDSDERDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRA 1169
             D    + EL +L+ QLS+SI  RS                        K GS+ RKKRA
Sbjct: 193  NDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAANVVAVKSGSNSRKKRA 252

Query: 1168 SIQEVDYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIA 989
            S+Q+VD+SDPLRYLR TTST++LLT ++E+ELS GIQ             ERCG  PT A
Sbjct: 253  SVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKLQEELAERCGGPPTFA 312

Query: 988  QWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 809
            QWAAAAG+D+KTLR+ +N+GI CKDKMIKSN+RLVISIAKNYQGAGMNLQDLVQEGCRGL
Sbjct: 313  QWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGL 372

Query: 808  VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 629
            VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS
Sbjct: 373  VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYS 432

Query: 628  KNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAE 449
            +NGR PNDEE+AEATGLSMKRL AVLLTPK PRSL+QKIG + NLKPSE+ ADPDAET E
Sbjct: 433  ENGRQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEIIADPDAETLE 492

Query: 448  DMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIES 269
            D+L +QFMK+DLDKVLD L+ RE QVIR RFG+DDGRMKTLQEIGEL+GVSRER+RQIES
Sbjct: 493  DVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIGELMGVSRERIRQIES 552

Query: 268  CAFRKLKNKKRTKHLEQYLIS 206
            CAFRKLKNKKRTKHL+QYLIS
Sbjct: 553  CAFRKLKNKKRTKHLQQYLIS 573


>ref|XP_011623893.1| PREDICTED: RNA polymerase sigma factor sigB [Amborella trichopoda]
          Length = 563

 Score =  595 bits (1533), Expect = e-167
 Identities = 318/556 (57%), Positives = 392/556 (70%), Gaps = 2/556 (0%)
 Frame = -3

Query: 1867 LHYRPTQHHNTQLKTKEPICSRGYCVSSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYT 1688
            +H R + H+N  L+T+E  C +  CVSS+ T ++DV+K+R+PS+  HSTSV+    LTY 
Sbjct: 9    IHIRTSYHNN--LRTREATCFQTQCVSSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYV 66

Query: 1687 GALAPPLKTSFGATLATETFLTGXXXXXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKI 1508
            G +    KT F A L TE+ L                         KDAA+M  +     
Sbjct: 67   GTIGSQKKTDFEAALVTESLLKSEEAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSR 126

Query: 1507 LDNPESFTSKGDLLLIESAKFTETEHVDTLGHFATTEFQPGEENDPGSSIKDAE--DSDE 1334
             D  + F S+ D+L ++ A+ TE E + ++   +     P +++   + +   E  D   
Sbjct: 127  SDKVDDFPSEADILRLQRARLTEMERIGSMDGSSIAGIGPRDKHKSVNQLSPNEMADKQS 186

Query: 1333 RDNELELLRMQLSESITARSGXXXXXXXXXXXXXXXXXXXXXXXKPGSSGRKKRASIQEV 1154
            R+N LE L++Q S+ +  RS                        K G++ R+KRA +QE+
Sbjct: 187  RENILEALQLQHSQRVAVRSRRQTERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEI 246

Query: 1153 DYSDPLRYLRGTTSTTKLLTYSQELELSAGIQXXXXXXXXXXXXXERCGCQPTIAQWAAA 974
            DYSDPLRYLRGTT++TKLLT ++ELELS GIQ             ER G +PT  QWAAA
Sbjct: 247  DYSDPLRYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAA 306

Query: 973  AGLDRKTLRKHLNHGIRCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 794
            AG+D+K LR+ L++G  CKDKMIKSNIRLVISIAKNYQG G+++QDLVQEGCRGLVRGAE
Sbjct: 307  AGIDQKALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAE 366

Query: 793  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRL 614
            KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATYRV+EA KQLYS+NGR 
Sbjct: 367  KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRH 426

Query: 613  PNDEEIAEATGLSMKRLKAVLLTPKPPRSLDQKIGNDLNLKPSEVTADPDAETAEDMLMK 434
            PNDEE+AEATGLSMKRL  VLLTPK PRSLDQKIG + NLKPSEV +DP+AETAED+LMK
Sbjct: 427  PNDEEVAEATGLSMKRLTTVLLTPKAPRSLDQKIGINQNLKPSEVISDPEAETAEDLLMK 486

Query: 433  QFMKEDLDKVLDGLSPRENQVIRSRFGLDDGRMKTLQEIGELIGVSRERVRQIESCAFRK 254
            QFMK+DL+KVL+ L+PRE QV+R RFGL+DGRMKTLQEIGEL+GVSRER+RQIES AFRK
Sbjct: 487  QFMKQDLEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRK 546

Query: 253  LKNKKRTKHLEQYLIS 206
            LKNKKRTK+L QYL+S
Sbjct: 547  LKNKKRTKNLRQYLLS 562


>ref|XP_010052664.1| PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Eucalyptus
            grandis]
          Length = 601

 Score =  594 bits (1532), Expect = e-167
 Identities = 321/528 (60%), Positives = 381/528 (72%)
 Frame = -3

Query: 1789 SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXX 1610
            S++T  ++D+EKLRLPS++  + S  + R  TYTGA+ PP + + GATLATET LT    
Sbjct: 74   SAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEA 133

Query: 1609 XXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIESAKFTETEH 1430
                                K AA+M    +   +DN    +S+    L + A+  E EH
Sbjct: 134  VIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEH 193

Query: 1429 VDTLGHFATTEFQPGEENDPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXX 1250
             + L      E    E N    S   +ED +    EL+LL++QL +SI  RS        
Sbjct: 194  SNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKE 253

Query: 1249 XXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELS 1070
                            K GS  +KKRA++QEVDYSDPLRYLRGTTS+++LLT ++E ELS
Sbjct: 254  IRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELS 313

Query: 1069 AGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIR 890
             GIQ             ERCG +P  AQWAAAAG+D+KTLRK LN+G  CKDKMIKSNIR
Sbjct: 314  EGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIR 373

Query: 889  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 710
            LVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 374  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSD 433

Query: 709  QSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPR 530
            QSRTIRLPFHMVEATYRVKEARKQLYS+NGR P++EE+AEATGLSMKRL AVL+TPK PR
Sbjct: 434  QSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPR 493

Query: 529  SLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGL 350
            SLDQKIG + NLKPSEV ADP+AET+ED+L+KQFM++DL+KVLD L+PRE QV+R RFGL
Sbjct: 494  SLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGL 553

Query: 349  DDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 206
            +DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKKRTKHL+QY+++
Sbjct: 554  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 601


>ref|XP_010052665.1| PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] gi|629111779|gb|KCW76739.1| hypothetical protein
            EUGRSUZ_D01094 [Eucalyptus grandis]
          Length = 588

 Score =  594 bits (1532), Expect = e-167
 Identities = 321/528 (60%), Positives = 381/528 (72%)
 Frame = -3

Query: 1789 SSSTTSLIDVEKLRLPSIDDHSTSVAAVRSLTYTGALAPPLKTSFGATLATETFLTGXXX 1610
            S++T  ++D+EKLRLPS++  + S  + R  TYTGA+ PP + + GATLATET LT    
Sbjct: 61   SAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEA 120

Query: 1609 XXXXXXXXXXXXXXXXXXXXKDAAVMPTTNTLKILDNPESFTSKGDLLLIESAKFTETEH 1430
                                K AA+M    +   +DN    +S+    L + A+  E EH
Sbjct: 121  VIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEH 180

Query: 1429 VDTLGHFATTEFQPGEENDPGSSIKDAEDSDERDNELELLRMQLSESITARSGXXXXXXX 1250
             + L      E    E N    S   +ED +    EL+LL++QL +SI  RS        
Sbjct: 181  SNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKE 240

Query: 1249 XXXXXXXXXXXXXXXXKPGSSGRKKRASIQEVDYSDPLRYLRGTTSTTKLLTYSQELELS 1070
                            K GS  +KKRA++QEVDYSDPLRYLRGTTS+++LLT ++E ELS
Sbjct: 241  IRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELS 300

Query: 1069 AGIQXXXXXXXXXXXXXERCGCQPTIAQWAAAAGLDRKTLRKHLNHGIRCKDKMIKSNIR 890
             GIQ             ERCG +P  AQWAAAAG+D+KTLRK LN+G  CKDKMIKSNIR
Sbjct: 301  EGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIR 360

Query: 889  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 710
            LVISIAKNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWIKQAVRKSLSD
Sbjct: 361  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSD 420

Query: 709  QSRTIRLPFHMVEATYRVKEARKQLYSKNGRLPNDEEIAEATGLSMKRLKAVLLTPKPPR 530
            QSRTIRLPFHMVEATYRVKEARKQLYS+NGR P++EE+AEATGLSMKRL AVL+TPK PR
Sbjct: 421  QSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPR 480

Query: 529  SLDQKIGNDLNLKPSEVTADPDAETAEDMLMKQFMKEDLDKVLDGLSPRENQVIRSRFGL 350
            SLDQKIG + NLKPSEV ADP+AET+ED+L+KQFM++DL+KVLD L+PRE QV+R RFGL
Sbjct: 481  SLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGL 540

Query: 349  DDGRMKTLQEIGELIGVSRERVRQIESCAFRKLKNKKRTKHLEQYLIS 206
            +DGRMKTLQEIGEL+GVSRER+RQIESCAFRKLKNKKRTKHL+QY+++
Sbjct: 541  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 588